Wall clock time and date at job start Wed Apr 1 2020 02:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 N 1.46494 * 109.46802 * 2 1 4 4 C 1.46507 * 119.99986 * 274.99880 * 3 2 1 5 5 C 1.53005 * 109.46768 * 277.17671 * 4 3 2 6 6 O 1.42894 * 109.47229 * 300.00207 * 5 4 3 7 7 C 1.42900 * 113.99842 * 199.19538 * 6 5 4 8 8 O 1.42899 * 109.46841 * 60.00199 * 5 4 3 9 9 C 1.42904 * 113.99744 * 165.07194 * 8 5 4 10 10 S 1.65601 * 120.00038 * 95.00128 * 3 2 1 11 11 O 1.42104 * 106.40297 * 165.00885 * 10 3 2 12 12 O 1.42099 * 106.40426 * 32.08993 * 10 3 2 13 13 C 1.76206 * 107.21833 * 278.54813 * 10 3 2 14 14 C 1.37641 * 120.12725 * 114.78965 * 13 10 3 15 15 C 1.38611 * 120.24362 * 180.31864 * 14 13 10 16 16 C 1.38661 * 120.50674 * 359.68000 * 15 14 13 17 17 C 1.37597 * 120.24398 * 359.97438 * 16 15 14 18 18 C 1.40701 * 120.12748 * 294.49066 * 13 10 3 19 19 C 1.41393 * 120.24236 * 359.97438 * 18 13 10 20 20 H 1.08005 * 120.00090 * 320.71828 * 19 18 13 21 21 C 1.39953 * 120.00104 * 140.72088 * 19 18 13 22 22 N 1.30820 * 120.00136 * 153.84822 * 21 19 18 23 23 Si 1.86797 * 119.99793 * 333.85068 * 21 19 18 24 24 H 1.48505 * 109.47040 * 266.17207 * 23 21 19 25 25 H 1.48499 * 109.47329 * 26.16841 * 23 21 19 26 26 H 1.48491 * 109.47381 * 146.17186 * 23 21 19 27 27 H 1.08999 * 109.46819 * 299.99819 * 1 2 3 28 28 H 1.09000 * 109.47035 * 60.00260 * 1 2 3 29 29 H 1.08999 * 109.46906 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46754 * 239.99834 * 2 1 3 31 31 H 1.08997 * 109.46673 * 120.00083 * 2 1 3 32 32 H 1.08991 * 109.46993 * 37.17952 * 4 3 2 33 33 H 1.08995 * 109.46889 * 157.18257 * 4 3 2 34 34 H 1.08995 * 109.46396 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47388 * 183.39824 * 7 6 5 36 36 H 1.09005 * 109.47052 * 303.39324 * 7 6 5 37 37 H 1.08994 * 109.47474 * 63.39431 * 7 6 5 38 38 H 1.09001 * 109.46721 * 199.48019 * 9 8 5 39 39 H 1.08994 * 109.47246 * 319.47892 * 9 8 5 40 40 H 1.08996 * 109.46698 * 79.48258 * 9 8 5 41 41 H 1.07995 * 119.87383 * 0.02562 * 14 13 10 42 42 H 1.07998 * 119.74718 * 179.69910 * 15 14 13 43 43 H 1.07997 * 119.87962 * 180.02562 * 16 15 14 44 44 H 1.07996 * 120.12782 * 180.02562 * 17 16 15 45 45 H 0.96997 * 120.00104 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2640 5 6 3.4919 1.7422 -1.9184 6 8 4.5649 2.0962 -1.0437 7 6 5.8323 2.2080 -1.6943 8 8 3.5277 0.3362 -2.1715 9 6 4.5622 -0.0661 -3.0714 10 16 2.4122 2.1202 1.4287 11 8 3.1648 3.2765 1.0882 12 8 2.9019 1.0991 2.2870 13 6 0.9111 2.6976 2.1484 14 6 0.4649 2.1650 3.3366 15 6 -0.7190 2.6128 3.9015 16 6 -1.4635 3.6050 3.2819 17 6 -1.0330 4.1568 2.0972 18 6 0.1671 3.7094 1.5139 19 6 0.6192 4.2687 0.2966 20 1 1.6720 4.4576 0.1471 21 6 -0.2976 4.5777 -0.7147 22 7 -0.0213 5.5154 -1.5840 23 14 -1.9159 3.6511 -0.8232 24 1 -1.7698 2.5076 -1.7595 25 1 -2.2875 3.1446 0.5224 26 1 -2.9769 4.5641 -1.3188 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.3398 1.8386 -1.9311 33 1 2.1310 3.1810 -1.0708 34 1 3.5957 2.2831 -2.8589 35 1 6.6035 2.4199 -0.9537 36 1 6.0639 1.2718 -2.2022 37 1 5.7964 3.0175 -2.4232 38 1 4.3258 -1.0482 -3.4810 39 1 4.6392 0.6571 -3.8832 40 1 5.5106 -0.1143 -2.5364 41 1 1.0370 1.3921 3.8280 42 1 -1.0641 2.1859 4.8316 43 1 -2.3842 3.9466 3.7312 44 1 -1.6141 4.9297 1.6164 45 1 -0.6568 5.7298 -2.2847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885388097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:27 Heat of formation + Delta-G solvation = -153.183057 kcal Electronic energy + Delta-G solvation = -31082.591545 eV Core-core repulsion = 26999.043312 eV Total energy + Delta-G solvation = -4083.548233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.30305 -39.51978 -38.02359 -37.30501 -36.82989 -36.52091 -35.53819 -32.38990 -32.20958 -31.67720 -29.56363 -27.49148 -27.06634 -26.80578 -24.06643 -23.55736 -22.85266 -22.78831 -19.71344 -19.43869 -18.87777 -18.40276 -18.09166 -17.58290 -17.19102 -16.83074 -16.62448 -15.92971 -15.74134 -15.31587 -15.15997 -15.05157 -14.82390 -14.66218 -14.65342 -14.35286 -13.94117 -13.87919 -13.75268 -13.40766 -13.21498 -13.16627 -12.94286 -12.83402 -12.75958 -12.71151 -12.54013 -12.39291 -12.27618 -12.11869 -11.80852 -11.71673 -11.57641 -11.06111 -11.03190 -10.89331 -10.60995 -9.91618 -9.70063 -9.38019 -8.91855 -6.60326 -0.11859 0.42944 0.83482 1.32733 1.40192 1.50336 2.17842 2.26121 2.52949 2.71374 2.91704 3.15050 3.36291 3.71332 3.86371 4.04863 4.12566 4.25354 4.26635 4.38535 4.41841 4.44042 4.46129 4.53472 4.59474 4.66528 4.73427 4.74032 4.82117 4.85343 4.94842 4.96508 5.02518 5.11005 5.29274 5.39194 5.45160 5.48792 5.61235 5.80583 5.89971 5.93063 6.15647 6.17022 6.23105 6.40117 6.63887 6.79429 8.11391 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.006175 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.001284 B = 4533.448159 C = 5285.116569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.972 5.972 4 C 0.137 3.863 5 C 0.226 3.774 6 O -0.412 6.412 7 C 0.005 3.995 8 O -0.399 6.399 9 C 0.011 3.989 10 S 2.715 3.285 11 O -0.986 6.986 12 O -1.014 7.014 13 C -0.777 4.777 14 C -0.011 4.011 15 C -0.239 4.239 16 C -0.056 4.056 17 C -0.220 4.220 18 C 0.155 3.845 19 C -0.504 4.504 20 H 0.100 0.900 21 C 0.082 3.918 22 N -0.809 5.809 23 Si 0.904 3.096 24 H -0.249 1.249 25 H -0.227 1.227 26 H -0.269 1.269 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.121 0.879 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.104 0.896 45 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.095 -9.596 -5.702 11.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.008 4.008 3 N -0.808 5.808 4 C 0.011 3.989 5 C 0.129 3.871 6 O -0.333 6.333 7 C -0.091 4.091 8 O -0.319 6.319 9 C -0.084 4.084 10 S 2.811 3.189 11 O -0.976 6.976 12 O -1.004 7.004 13 C -0.870 4.870 14 C -0.031 4.031 15 C -0.259 4.259 16 C -0.074 4.074 17 C -0.240 4.240 18 C 0.150 3.850 19 C -0.531 4.531 20 H 0.118 0.882 21 C -0.139 4.139 22 N -0.432 5.432 23 Si 0.724 3.276 24 H -0.173 1.173 25 H -0.149 1.149 26 H -0.193 1.193 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.139 0.861 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.122 0.878 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.804 -9.444 -5.362 11.009 hybrid contribution -0.838 0.552 -0.523 1.131 sum 0.966 -8.892 -5.885 10.707 Atomic orbital electron populations 1.22287 0.96111 1.03005 1.01897 1.21439 0.94015 0.80895 1.04473 1.56909 1.81859 1.22271 1.19752 1.21622 0.93608 0.98330 0.85332 1.24124 0.88791 0.81576 0.92627 1.88151 1.18165 1.88813 1.38183 1.23359 0.85001 1.01668 0.99056 1.88025 1.53407 1.24524 1.65984 1.23268 0.90858 1.01898 0.92387 1.00642 0.73957 0.72091 0.72170 1.93459 1.70452 1.50334 1.83361 1.93379 1.80170 1.59811 1.67086 1.30459 1.28285 1.15341 1.12884 1.20681 0.94956 0.95230 0.92237 1.20982 0.97695 1.03928 1.03290 1.21280 0.98178 0.93981 0.93977 1.21431 1.00183 1.04033 0.98365 1.17208 0.90294 0.86171 0.91295 1.19982 0.97829 1.36565 0.98760 0.88207 1.26518 1.01164 0.92276 0.93970 1.69794 1.38553 1.21292 1.13518 0.86281 0.78375 0.80773 0.82149 1.17312 1.14915 1.19338 0.93876 0.92690 0.89215 0.87639 0.90583 0.87923 0.87716 0.90239 0.89552 0.91061 0.92857 0.88069 0.92473 0.93124 0.86065 0.84726 0.84743 0.87809 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.29 10.24 71.99 0.74 -4.55 16 2 C 0.12 3.83 6.19 86.38 0.53 4.37 16 3 N -0.97 -38.37 2.60 -515.79 -1.34 -39.71 16 4 C 0.14 5.17 5.04 86.38 0.44 5.60 16 5 C 0.23 7.38 3.17 71.98 0.23 7.61 16 6 O -0.41 -15.37 9.23 -121.61 -1.12 -16.49 16 7 C 0.00 0.12 10.65 113.37 1.21 1.33 16 8 O -0.40 -11.40 8.54 -126.21 -1.08 -12.48 16 9 C 0.01 0.22 9.79 113.37 1.11 1.33 16 10 S 2.71 127.43 4.91 -56.49 -0.28 127.15 16 11 O -0.99 -52.12 13.49 -122.63 -1.65 -53.78 16 12 O -1.01 -49.18 15.73 -128.00 -2.01 -51.20 16 13 C -0.78 -36.55 5.63 22.73 0.13 -36.42 16 14 C -0.01 -0.49 9.54 22.22 0.21 -0.27 16 15 C -0.24 -9.13 10.05 22.46 0.23 -8.90 16 16 C -0.06 -2.16 10.02 22.22 0.22 -1.94 16 17 C -0.22 -9.82 6.74 22.73 0.15 -9.67 16 18 C 0.15 7.52 4.76 -21.29 -0.10 7.42 16 19 C -0.50 -25.52 6.46 23.46 0.15 -25.37 16 20 H 0.10 5.66 4.79 -2.91 -0.01 5.65 16 21 C 0.08 3.83 5.23 85.26 0.45 4.28 16 22 N -0.81 -38.84 13.93 21.83 0.30 -38.54 16 23 Si 0.90 35.67 26.56 68.60 1.82 37.49 16 24 H -0.25 -9.14 7.11 99.48 0.71 -8.44 16 25 H -0.23 -9.09 5.40 99.48 0.54 -8.55 16 26 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 27 H 0.04 1.48 7.81 -2.39 -0.02 1.46 16 28 H 0.05 1.67 8.13 -2.39 -0.02 1.66 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.11 3.07 6.33 -2.39 -0.02 3.05 16 31 H 0.08 2.56 7.05 -2.39 -0.02 2.54 16 32 H 0.10 3.43 8.11 -2.39 -0.02 3.41 16 33 H 0.10 4.65 4.46 -2.39 -0.01 4.64 16 34 H 0.08 2.21 7.60 -2.39 -0.02 2.20 16 35 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 1.50 4.40 -2.38 -0.01 1.49 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 0.93 7.73 -2.39 -0.02 0.91 16 40 H 0.05 0.97 5.89 -2.39 -0.01 0.95 16 41 H 0.12 4.85 7.32 -2.91 -0.02 4.83 16 42 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 43 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 44 H 0.10 4.48 6.61 -2.91 -0.02 4.46 16 45 H 0.30 12.75 8.30 -92.71 -0.77 11.98 16 Total: -1.00 -65.79 361.28 1.17 -64.62 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.84 Total: 38.12 kcal Atomic # 6 Polarization: -60.87 SS G_CDS: 5.69 Total: -55.18 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -1.04 Total: -78.25 kcal Atomic # 8 Polarization: -128.08 SS G_CDS: -5.87 Total: -133.95 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 1.82 Total: 37.49 kcal Atomic # 16 Polarization: 127.43 SS G_CDS: -0.28 Total: 127.15 kcal Total: -65.79 1.17 -64.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885388097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.566 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds