Wall clock time and date at job start Wed Apr 1 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.09000 * 109.47402 * 60.00317 * 4 3 2 6 6 O 1.42897 * 109.46977 * 300.00294 * 4 3 2 7 7 C 1.52996 * 109.47245 * 180.02562 * 4 3 2 8 8 N 1.46502 * 109.47627 * 185.00002 * 7 4 3 9 9 C 1.38994 * 120.00248 * 179.97438 * 8 7 4 10 10 C 1.39071 * 119.68872 * 359.72511 * 9 8 7 11 11 C 1.38377 * 119.15345 * 179.79564 * 10 9 8 12 12 C 1.38761 * 118.53719 * 0.46993 * 11 10 9 13 13 C 1.38370 * 119.30252 * 359.75091 * 12 11 10 14 14 F 1.35104 * 119.60361 * 179.97438 * 13 12 11 15 15 N 1.32143 * 120.79193 * 0.02562 * 13 12 11 16 16 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 17 17 O 1.21279 * 120.00031 * 180.02562 * 16 2 1 18 18 C 1.50699 * 119.99563 * 0.02562 * 16 2 1 19 19 S 1.81004 * 109.46896 * 179.97438 * 18 16 2 20 20 C 1.76205 * 99.99950 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00211 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99841 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00169 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99783 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47512 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47031 * 120.00162 * 24 22 20 27 27 H 1.48506 * 109.46987 * 239.99996 * 24 22 20 28 28 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 29 29 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 30 30 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 31 31 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 32 32 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 33 33 H 0.96703 * 114.00499 * 299.99593 * 6 4 3 34 34 H 1.09001 * 109.47044 * 305.00068 * 7 4 3 35 35 H 1.09000 * 109.47161 * 64.99629 * 7 4 3 36 36 H 0.97000 * 119.99346 * 0.02562 * 8 7 4 37 37 H 1.07995 * 120.41964 * 0.02562 * 10 9 8 38 38 H 1.07993 * 120.73110 * 180.22503 * 11 10 9 39 39 H 1.07994 * 120.34771 * 179.76994 * 12 11 10 40 40 H 1.09004 * 109.47017 * 299.99442 * 18 16 2 41 41 H 1.09002 * 109.47507 * 59.99434 * 18 16 2 42 42 H 0.97001 * 120.00208 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 3.0416 0.9508 1.9565 6 8 1.2038 1.8813 2.1161 7 6 3.2170 3.0357 1.4426 8 7 3.5654 3.3985 2.8185 9 6 4.2679 4.5709 3.0715 10 6 4.6418 5.3919 2.0130 11 6 5.3371 6.5586 2.2779 12 6 5.6452 6.8619 3.5964 13 6 5.2467 5.9978 4.6010 14 9 5.5439 6.2869 5.8868 15 7 4.5796 4.8929 4.3177 16 6 2.1389 -1.1672 0.0005 17 8 3.3517 -1.1672 0.0010 18 6 1.3854 -2.4723 0.0005 19 16 2.5616 -3.8480 0.0005 20 6 1.4415 -5.2082 -0.0003 21 1 0.3762 -5.0306 -0.0001 22 6 1.9283 -6.5081 -0.0010 23 7 3.2266 -6.7247 -0.0016 24 14 0.7408 -7.9500 -0.0011 25 1 -0.6547 -7.4422 0.0003 26 1 0.9660 -8.7766 -1.2140 27 1 0.9670 -8.7777 1.2110 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 3.1499 1.1384 -0.5137 32 1 1.6085 2.0284 -0.5138 33 1 0.6267 2.5440 1.7126 34 1 4.1277 2.9298 0.8531 35 1 2.5917 3.8158 1.0083 36 1 3.3065 2.8202 3.5529 37 1 4.3893 5.1241 0.9977 38 1 5.6368 7.2166 1.4757 39 1 6.1902 7.7629 3.8360 40 1 0.7585 -2.5298 0.8904 41 1 0.7590 -2.5302 -0.8896 42 1 3.5668 -7.6331 -0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124110973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:25 Heat of formation + Delta-G solvation = -107.951468 kcal Electronic energy + Delta-G solvation = -26206.181186 eV Core-core repulsion = 22033.426788 eV Total energy + Delta-G solvation = -4172.754398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.03050 -41.22833 -40.89797 -38.93030 -36.52053 -35.87336 -34.60044 -33.59970 -32.35015 -30.93898 -29.67857 -27.74891 -27.70165 -26.18284 -24.60738 -23.62717 -22.75064 -20.76048 -19.58292 -19.11057 -18.82337 -18.12899 -17.62439 -17.28943 -17.10727 -17.02151 -16.89737 -16.69593 -16.49432 -16.31171 -15.75428 -15.53756 -15.01413 -14.93694 -14.55029 -14.43978 -14.25672 -14.05469 -13.84928 -13.55613 -13.49825 -13.23688 -13.16037 -13.09795 -12.92900 -12.69470 -12.51885 -12.14489 -11.71476 -11.44638 -11.30692 -11.17231 -10.88875 -10.73409 -10.65607 -10.27956 -9.59579 -8.78747 -8.68494 -8.36309 -6.14421 0.08378 0.37308 1.25179 1.40291 1.44730 1.53956 1.57963 1.84181 2.17335 2.26572 2.72607 2.92400 2.97943 3.25801 3.44304 3.56863 3.74530 3.77338 3.88228 3.99897 4.04293 4.22284 4.27053 4.31309 4.37825 4.41617 4.49032 4.57888 4.71801 4.78613 4.79978 4.97015 4.98070 5.04268 5.24122 5.40487 5.51066 5.59228 5.91381 6.18333 6.25413 6.36451 6.84456 6.93507 7.05120 7.14850 8.73161 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.001782 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.722318 B =15707.947194 C =16218.763017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.602 5.602 3 C 0.089 3.911 4 C 0.092 3.908 5 H 0.068 0.932 6 O -0.562 6.562 7 C 0.105 3.895 8 N -0.719 5.719 9 C 0.420 3.580 10 C -0.246 4.246 11 C 0.000 4.000 12 C -0.251 4.251 13 C 0.321 3.679 14 F -0.128 7.128 15 N -0.620 5.620 16 C 0.529 3.471 17 O -0.564 6.564 18 C -0.124 4.124 19 S -0.154 6.154 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.256 1.256 26 H -0.272 1.272 27 H -0.275 1.275 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.391 0.609 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.402 0.598 37 H 0.168 0.832 38 H 0.185 0.815 39 H 0.166 0.834 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.984 31.144 -1.204 31.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.334 5.334 3 C -0.035 4.035 4 C 0.031 3.969 5 H 0.086 0.914 6 O -0.370 6.370 7 C -0.019 4.019 8 N -0.349 5.349 9 C 0.183 3.817 10 C -0.271 4.271 11 C -0.025 4.025 12 C -0.276 4.276 13 C 0.169 3.831 14 F -0.107 7.107 15 N -0.345 5.345 16 C 0.316 3.684 17 O -0.443 6.443 18 C -0.275 4.275 19 S 0.073 5.927 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.201 1.201 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.241 0.759 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.237 0.763 37 H 0.185 0.815 38 H 0.202 0.798 39 H 0.183 0.817 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.138 30.017 -0.335 30.182 hybrid contribution -1.531 -0.716 0.197 1.702 sum -4.669 29.301 -0.137 29.671 Atomic orbital electron populations 1.22093 0.76773 1.04778 1.03067 1.47650 1.08498 1.04350 1.72945 1.22231 0.99559 0.85526 0.96149 1.22302 0.85443 0.95486 0.93695 0.91420 1.86680 1.28782 1.64500 1.57001 1.22181 1.00948 0.96858 0.81954 1.44612 1.59374 1.21557 1.09400 1.18183 0.88769 0.87457 0.87295 1.21810 1.07654 0.97607 0.99980 1.21705 0.90155 0.94461 0.96136 1.21813 1.09524 1.03451 0.92775 1.18091 0.94503 0.90833 0.79721 1.91583 1.90532 1.92101 1.36532 1.66081 1.22357 1.21699 1.24408 1.20104 0.87277 0.85653 0.75330 1.90677 1.15520 1.87518 1.50584 1.23375 1.02720 0.95348 1.06097 1.85545 1.12730 0.97393 1.97014 1.23227 0.94614 0.92677 1.58784 0.89970 1.26139 0.97618 1.01724 0.93743 1.70188 1.14101 1.22427 1.48054 0.84900 0.78197 0.76731 0.78089 1.17961 1.19779 1.20059 0.91755 0.91382 0.87191 0.90021 0.84833 0.75917 0.89790 0.87488 0.76327 0.81492 0.79752 0.81671 0.88140 0.87353 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 9.74 127.77 1.25 2.35 16 2 N -0.60 -13.61 2.80 -846.75 -2.37 -15.98 16 3 C 0.09 1.34 5.14 86.38 0.44 1.79 16 4 C 0.09 1.45 3.27 30.59 0.10 1.55 16 5 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 6 O -0.56 -8.21 12.51 -148.98 -1.86 -10.07 16 7 C 0.10 1.11 4.53 86.38 0.39 1.50 16 8 N -0.72 -12.40 5.68 -345.11 -1.96 -14.36 16 9 C 0.42 8.04 7.65 133.04 1.02 9.06 16 10 C -0.25 -2.91 9.33 22.50 0.21 -2.70 16 11 C 0.00 0.00 10.16 22.43 0.23 0.23 16 12 C -0.25 -3.42 10.08 22.43 0.23 -3.20 16 13 C 0.32 7.01 8.41 84.68 0.71 7.72 16 14 F -0.13 -3.03 17.29 44.97 0.78 -2.25 16 15 N -0.62 -15.43 10.40 -194.34 -2.02 -17.45 16 16 C 0.53 19.00 7.69 87.66 0.67 19.67 16 17 O -0.56 -25.20 15.44 -3.02 -0.05 -25.24 16 18 C -0.12 -4.94 4.71 71.24 0.34 -4.61 16 19 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 20 C -0.55 -31.27 9.50 67.95 0.65 -30.62 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.21 13.22 21.65 0.29 -55.93 16 24 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 28 H 0.06 0.97 8.01 -2.39 -0.02 0.96 16 29 H 0.07 1.12 6.44 -2.39 -0.02 1.11 16 30 H 0.11 0.70 7.89 -2.38 -0.02 0.68 16 31 H 0.08 1.57 7.42 -2.39 -0.02 1.55 16 32 H 0.13 0.65 7.89 -2.39 -0.02 0.63 16 33 H 0.39 1.95 9.05 -74.06 -0.67 1.28 16 34 H 0.08 0.84 7.91 -2.39 -0.02 0.82 16 35 H 0.11 0.38 7.94 -2.39 -0.02 0.36 16 36 H 0.40 8.46 8.60 -92.71 -0.80 7.66 16 37 H 0.17 0.94 6.70 -2.91 -0.02 0.92 16 38 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 39 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.10 3.75 8.11 -2.39 -0.02 3.73 16 41 H 0.11 3.85 7.40 -2.39 -0.02 3.84 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -87.14 378.21 -0.02 -87.16 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -0.39 Total: 14.24 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 6.69 Total: 3.91 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -6.06 Total: -103.72 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -1.91 Total: -35.31 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -87.14 -0.02 -87.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124110973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.789 kcal (2) G-P(sol) polarization free energy of solvation -87.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds