Wall clock time and date at job start Wed Apr 1 2020 01:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35893 * 117.00083 * 2 1 4 4 C 1.38753 * 120.05853 * 359.95885 * 3 2 1 5 5 C 1.38120 * 119.94776 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05528 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.11126 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05464 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02647 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46640 * 145.00236 * 9 8 7 11 11 O 1.42899 * 109.47310 * 24.99771 * 9 8 7 12 12 C 1.53004 * 109.46968 * 264.99990 * 9 8 7 13 13 N 1.46499 * 109.47131 * 185.05731 * 12 9 8 14 14 C 1.46497 * 120.00313 * 86.29524 * 13 12 9 15 15 C 1.53003 * 109.47042 * 305.23248 * 14 13 12 16 16 C 1.53006 * 109.46836 * 65.23083 * 14 13 12 17 17 S 1.65602 * 119.99565 * 266.30051 * 13 12 9 18 18 O 1.42103 * 106.40047 * 203.53779 * 17 13 12 19 19 O 1.42098 * 106.40216 * 336.45701 * 17 13 12 20 20 C 1.76204 * 107.22170 * 89.99947 * 17 13 12 21 21 H 1.07999 * 119.99309 * 359.97438 * 20 17 13 22 22 C 1.37869 * 120.00250 * 179.97438 * 20 17 13 23 23 N 1.31524 * 119.99843 * 359.97438 * 22 20 17 24 24 Si 1.86794 * 120.00100 * 179.97438 * 22 20 17 25 25 H 1.48504 * 109.47086 * 90.00141 * 24 22 20 26 26 H 1.48508 * 109.47281 * 209.99933 * 24 22 20 27 27 H 1.48495 * 109.47534 * 330.00482 * 24 22 20 28 28 H 1.09007 * 109.46697 * 299.99831 * 1 2 3 29 29 H 1.08994 * 109.47142 * 59.99545 * 1 2 3 30 30 H 1.08998 * 109.47300 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.02658 * 0.04026 * 4 3 2 32 32 H 1.07997 * 119.97277 * 180.24882 * 5 4 3 33 33 H 1.08002 * 119.94522 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.97431 * 179.97438 * 7 6 5 35 35 H 0.96702 * 114.00217 * 300.00744 * 11 9 8 36 36 H 1.09004 * 109.47032 * 305.05561 * 12 9 8 37 37 H 1.09004 * 109.47048 * 65.05307 * 12 9 8 38 38 H 1.09003 * 109.47090 * 185.23158 * 14 13 12 39 39 H 1.08997 * 109.46963 * 66.63426 * 15 14 13 40 40 H 1.09005 * 109.47041 * 186.62740 * 15 14 13 41 41 H 1.09001 * 109.47165 * 306.62561 * 15 14 13 42 42 H 1.08998 * 109.46552 * 60.00444 * 16 14 13 43 43 H 1.09003 * 109.46741 * 179.97438 * 16 14 13 44 44 H 1.08989 * 109.47243 * 300.00086 * 16 14 13 45 45 H 0.97002 * 119.99788 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6047 -0.0014 6 6 3.3020 3.6757 -0.0005 7 6 4.0561 2.5170 0.0003 8 6 3.4312 1.2847 -0.0002 9 6 4.2538 0.0220 0.0001 10 1 3.7463 -0.7419 0.5892 11 8 5.5366 0.2893 0.5703 12 6 4.4277 -0.4737 -1.4369 13 7 5.1228 -1.7632 -1.4278 14 6 4.3615 -3.0048 -1.2693 15 6 3.5132 -2.9241 0.0014 16 6 3.4479 -3.2009 -2.4809 17 16 6.7693 -1.8174 -1.5966 18 8 7.0792 -3.1114 -2.0954 19 8 7.1443 -0.6183 -2.2604 20 6 7.4628 -1.7285 0.0208 21 1 6.8157 -1.6542 0.8823 22 6 8.8312 -1.7538 0.1866 23 7 9.6191 -1.8448 -0.8626 24 14 9.5663 -1.6589 1.9012 25 1 9.7240 -3.0303 2.4488 26 1 10.8939 -0.9968 1.8347 27 1 8.6655 -0.8744 2.7833 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.2129 2.3204 -0.0009 32 1 1.3341 4.5113 0.0020 33 1 3.7924 4.6380 -0.0005 34 1 5.1345 2.5751 0.0006 35 1 6.0454 0.9613 0.0963 36 1 3.4487 -0.5919 -1.9014 37 1 5.0133 0.2508 -2.0028 38 1 5.0503 -3.8462 -1.1936 39 1 2.7465 -2.1592 -0.1215 40 1 3.0384 -3.8884 0.1831 41 1 4.1502 -2.6676 0.8479 42 1 4.0523 -3.2583 -3.3861 43 1 2.8817 -4.1249 -2.3632 44 1 2.7592 -2.3595 -2.5566 45 1 10.5820 -1.8623 -0.7460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:09 Heat of formation + Delta-G solvation = -175.941705 kcal Electronic energy + Delta-G solvation = -30307.049385 eV Core-core repulsion = 26222.514263 eV Total energy + Delta-G solvation = -4084.535122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.33804 -39.27587 -38.21234 -37.53038 -36.79399 -36.07245 -35.04431 -32.91494 -32.04150 -31.02082 -28.79219 -28.21632 -27.99704 -27.77046 -24.62256 -22.96266 -22.06309 -21.81939 -20.50455 -19.49721 -18.99411 -18.35285 -17.70682 -17.30041 -16.97663 -16.62915 -16.41026 -16.36142 -15.77804 -15.40955 -15.38455 -15.15168 -15.02333 -14.88348 -14.33157 -14.16790 -13.89648 -13.71593 -13.32102 -13.20345 -13.07184 -12.96749 -12.87675 -12.72623 -12.62249 -12.44848 -12.37978 -12.35207 -12.26824 -12.10367 -11.93013 -11.84364 -11.70723 -11.45824 -11.19374 -11.15182 -10.73568 -9.93536 -9.58711 -9.02700 -8.62761 -7.28057 0.33651 0.43595 0.53087 1.36119 1.36534 1.54164 2.27246 2.43892 2.67943 2.76922 2.87542 3.60386 3.69655 3.89903 3.96686 3.99893 4.09293 4.13028 4.25706 4.34576 4.38310 4.40722 4.45543 4.48773 4.49976 4.55380 4.70583 4.76935 4.80570 4.82929 4.89038 4.92714 4.99068 5.05544 5.10349 5.26976 5.39379 5.42213 5.47925 5.54660 5.58161 5.65544 5.89492 6.08252 6.19276 6.51006 6.85080 6.94386 8.31752 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.004788 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.703874 B = 5847.143398 C = 6937.405520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.127 3.873 4 C -0.209 4.209 5 C -0.082 4.082 6 C -0.160 4.160 7 C -0.091 4.091 8 C -0.164 4.164 9 C 0.129 3.871 10 H 0.120 0.880 11 O -0.555 6.555 12 C 0.103 3.897 13 N -0.993 5.993 14 C 0.132 3.868 15 C -0.156 4.156 16 C -0.153 4.153 17 S 2.714 3.286 18 O -1.050 7.050 19 O -1.043 7.043 20 C -1.002 5.002 21 H 0.123 0.877 22 C 0.073 3.927 23 N -0.903 5.903 24 Si 0.984 3.016 25 H -0.260 1.260 26 H -0.266 1.266 27 H -0.252 1.252 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.127 0.873 35 H 0.374 0.626 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.701 7.758 4.086 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.081 3.919 4 C -0.227 4.227 5 C -0.100 4.100 6 C -0.178 4.178 7 C -0.109 4.109 8 C -0.165 4.165 9 C 0.068 3.932 10 H 0.137 0.863 11 O -0.361 6.361 12 C -0.023 4.023 13 N -0.830 5.830 14 C 0.026 3.974 15 C -0.214 4.214 16 C -0.212 4.212 17 S 2.818 3.182 18 O -1.040 7.040 19 O -1.033 7.033 20 C -1.137 5.137 21 H 0.141 0.859 22 C -0.138 4.138 23 N -0.536 5.536 24 Si 0.804 3.196 25 H -0.185 1.185 26 H -0.191 1.191 27 H -0.175 1.175 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.134 0.866 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.223 0.777 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.222 7.011 3.534 22.628 hybrid contribution 0.933 0.528 0.601 1.228 sum -20.290 7.538 4.135 22.036 Atomic orbital electron populations 1.23341 0.76528 1.05495 1.02224 1.86063 1.23292 1.26433 1.88446 1.18852 0.91046 0.85445 0.96550 1.21510 1.01131 0.91732 1.08342 1.21319 0.94456 0.98012 0.96206 1.21302 0.94590 0.98393 1.03502 1.21013 1.00665 0.91676 0.97541 1.19967 0.92049 0.96348 1.08172 1.21432 0.83297 0.93854 0.94579 0.86255 1.86739 1.29031 1.63480 1.56882 1.21886 0.99101 0.84209 0.97073 1.57440 1.24457 1.11277 1.89786 1.20983 0.94182 0.84945 0.97266 1.22264 0.99767 1.03665 0.95721 1.22113 0.99234 1.03498 0.96334 1.00071 0.70450 0.71298 0.76397 1.93280 1.83442 1.44271 1.83038 1.93259 1.82046 1.50128 1.77844 1.30837 1.01300 1.63932 1.17593 0.85908 1.25876 0.96503 0.88003 1.03454 1.70023 1.07208 1.43090 1.33319 0.85210 0.77824 0.79651 0.76903 1.18477 1.19067 1.17522 0.91736 0.91544 0.86586 0.82853 0.82903 0.84007 0.85553 0.77708 0.88022 0.91067 0.91122 0.90117 0.89676 0.93497 0.94376 0.89099 0.90897 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.96 8.85 -92.35 -0.82 -7.78 16 3 C 0.13 2.99 6.66 22.51 0.15 3.14 16 4 C -0.21 -3.80 9.04 22.37 0.20 -3.60 16 5 C -0.08 -1.42 10.04 22.25 0.22 -1.20 16 6 C -0.16 -3.32 10.04 22.28 0.22 -3.09 16 7 C -0.09 -2.40 9.30 22.25 0.21 -2.19 16 8 C -0.16 -4.64 5.08 -19.77 -0.10 -4.74 16 9 C 0.13 4.32 2.89 29.85 0.09 4.40 16 10 H 0.12 3.96 4.38 -2.39 -0.01 3.95 16 11 O -0.55 -21.81 10.21 -148.98 -1.52 -23.33 16 12 C 0.10 3.70 4.72 86.38 0.41 4.11 16 13 N -0.99 -41.69 2.68 -493.37 -1.32 -43.02 16 14 C 0.13 4.68 3.20 45.00 0.14 4.83 16 15 C -0.16 -4.41 7.71 71.98 0.55 -3.86 16 16 C -0.15 -4.34 9.25 71.98 0.67 -3.67 16 17 S 2.71 151.70 4.76 -56.49 -0.27 151.43 16 18 O -1.05 -65.57 16.64 -128.00 -2.13 -67.70 16 19 O -1.04 -63.07 16.58 -128.00 -2.12 -65.19 16 20 C -1.00 -56.67 8.40 67.73 0.57 -56.10 16 21 H 0.12 6.57 6.75 -2.91 -0.02 6.55 16 22 C 0.07 4.18 5.46 84.65 0.46 4.64 16 23 N -0.90 -55.56 13.19 21.45 0.28 -55.28 16 24 Si 0.98 43.77 29.54 68.60 2.03 45.79 16 25 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 27 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 28 H 0.06 0.61 7.66 -2.38 -0.02 0.59 16 29 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 30 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.15 1.84 6.30 -2.91 -0.02 1.82 16 32 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.13 3.35 6.41 -2.91 -0.02 3.33 16 35 H 0.37 14.03 7.33 -74.06 -0.54 13.48 16 36 H 0.10 3.07 6.72 -2.38 -0.02 3.05 16 37 H 0.07 2.79 6.94 -2.38 -0.02 2.78 16 38 H 0.07 2.87 7.01 -2.39 -0.02 2.85 16 39 H 0.08 2.03 6.01 -2.39 -0.01 2.02 16 40 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.05 1.51 7.52 -2.39 -0.02 1.49 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.07 1.78 6.88 -2.39 -0.02 1.77 16 45 H 0.29 16.37 8.31 -92.71 -0.77 15.60 16 Total: -1.00 -81.63 369.92 -0.48 -82.11 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: 0.48 Total: 38.95 kcal Atomic # 6 Polarization: -60.91 SS G_CDS: 4.91 Total: -56.00 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -1.04 Total: -98.29 kcal Atomic # 8 Polarization: -157.40 SS G_CDS: -6.59 Total: -163.99 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 151.70 SS G_CDS: -0.27 Total: 151.43 kcal Total: -81.63 -0.48 -82.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.830 kcal (2) G-P(sol) polarization free energy of solvation -81.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds