Wall clock time and date at job start Wed Apr 1 2020 02:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47357 * 2 1 4 4 N 1.46905 * 109.47447 * 119.99999 * 2 1 3 5 5 C 1.46897 * 110.99994 * 274.99981 * 4 2 1 6 6 C 1.50696 * 109.47291 * 179.97438 * 5 4 2 7 7 O 1.21292 * 119.99988 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00061 * 180.02562 * 6 5 4 9 9 C 1.37104 * 120.00247 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99370 * 359.97438 * 9 8 6 11 11 C 1.38944 * 120.00430 * 180.02562 * 9 8 6 12 12 N 1.31413 * 119.99841 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00208 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47609 * 89.99201 * 13 11 9 15 15 H 1.48500 * 109.46997 * 209.99843 * 13 11 9 16 16 H 1.48503 * 109.46658 * 329.99448 * 13 11 9 17 17 C 1.53006 * 109.47270 * 240.00203 * 2 1 3 18 18 H 1.08997 * 109.47052 * 174.99899 * 17 2 1 19 19 C 1.53004 * 109.46981 * 294.99801 * 17 2 1 20 20 N 1.46496 * 109.46987 * 54.99463 * 17 2 1 21 21 C 1.34777 * 119.99613 * 154.99881 * 20 17 2 22 22 O 1.21735 * 120.00460 * 0.02562 * 21 20 17 23 23 C 1.46296 * 120.00111 * 179.97438 * 21 20 17 24 24 S 1.75822 * 125.46197 * 0.03214 * 23 21 20 25 25 C 1.70596 * 91.60789 * 179.97438 * 24 23 21 26 26 C 1.33733 * 111.03896 * 0.02562 * 25 24 23 27 27 C 1.36926 * 125.46634 * 179.71735 * 23 21 20 28 28 F 1.35098 * 123.40488 * 0.02591 * 27 23 21 29 29 H 1.09000 * 109.47194 * 59.99986 * 1 2 3 30 30 H 1.09004 * 109.46920 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47052 * 299.99837 * 1 2 3 32 32 H 1.00903 * 110.99860 * 151.04321 * 4 2 1 33 33 H 1.08995 * 109.47277 * 300.00116 * 5 4 2 34 34 H 1.09001 * 109.46962 * 59.99782 * 5 4 2 35 35 H 0.97004 * 120.00387 * 0.02562 * 8 6 5 36 36 H 0.97003 * 119.99794 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.47097 * 300.00051 * 19 17 2 38 38 H 1.09005 * 109.46965 * 59.99860 * 19 17 2 39 39 H 1.08998 * 109.47107 * 179.97438 * 19 17 2 40 40 H 0.96996 * 120.00516 * 335.00866 * 20 17 2 41 41 H 1.08005 * 124.48215 * 179.97438 * 25 24 23 42 42 H 1.08006 * 122.45135 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5875 -0.5218 3.5560 7 8 2.8679 -1.6987 3.4702 8 7 2.7274 0.1203 4.7326 9 6 3.1873 -0.5568 5.8326 10 1 3.4370 -1.6048 5.7561 11 6 3.3311 0.1050 7.0458 12 7 3.0268 1.3800 7.1389 13 14 3.9584 -0.8174 8.5442 14 1 5.4392 -0.7222 8.6001 15 1 3.3771 -0.2191 9.7728 16 1 3.5573 -2.2441 8.4509 17 6 2.0400 -0.7212 -1.2493 18 1 3.1263 -0.6443 -1.2952 19 6 1.6353 -2.1955 -1.1880 20 7 1.4558 -0.1037 -2.4424 21 6 2.0912 -0.1937 -3.6275 22 8 3.1504 -0.7886 -3.7067 23 6 1.5076 0.4225 -4.8191 24 16 -0.0084 1.3116 -4.8692 25 6 0.1628 1.6040 -6.5412 26 6 1.2909 1.0604 -7.0106 27 6 2.0574 0.4045 -6.0731 28 9 3.2307 -0.1995 -6.3622 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.9174 -1.1205 1.0287 33 1 2.7588 1.0462 2.1182 34 1 1.0871 0.6163 2.5525 35 1 2.5028 1.0614 4.8014 36 1 3.1276 1.8421 7.9858 37 1 2.0699 -2.6550 -0.3003 38 1 0.5489 -2.2724 -1.1421 39 1 1.9982 -2.7092 -2.0782 40 1 0.6118 0.3702 -2.3794 41 1 -0.5465 2.1546 -7.1414 42 1 1.5823 1.1351 -8.0479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329028904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:03 Heat of formation + Delta-G solvation = -78.503272 kcal Electronic energy + Delta-G solvation = -26667.436826 eV Core-core repulsion = 22495.959397 eV Total energy + Delta-G solvation = -4171.477429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.115 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.22224 -40.22210 -38.53871 -37.90946 -37.17096 -34.51699 -33.80219 -31.61651 -31.16104 -29.97559 -29.06829 -26.59247 -25.62953 -24.58849 -23.65689 -21.84754 -20.33980 -19.75744 -19.39598 -19.12498 -17.92601 -17.43403 -16.54832 -16.33713 -16.16590 -15.73399 -15.56658 -15.15202 -14.95191 -14.78362 -14.51412 -14.40014 -14.01703 -13.92745 -13.70091 -13.25285 -13.03603 -12.80721 -12.51765 -12.40505 -12.22420 -12.06040 -11.83069 -11.72647 -11.59898 -11.44507 -11.10498 -10.94028 -10.72810 -10.39083 -10.33677 -10.21617 -9.59205 -9.50869 -9.29953 -9.03213 -8.47442 -8.13112 -7.96273 -6.41791 -3.82532 -0.16894 0.75032 1.16124 1.65012 2.72629 2.79476 3.18240 3.26931 3.33041 3.76021 3.90523 4.08480 4.28448 4.32880 4.38770 4.57569 4.70657 4.82919 5.09562 5.11886 5.14164 5.24794 5.26160 5.39356 5.53872 5.55658 5.70766 5.74051 5.76562 5.91098 5.92488 5.95107 6.12076 6.26524 6.31862 6.41623 7.08479 7.18605 7.55415 7.58344 7.85782 8.06245 8.61000 9.17933 9.54103 10.05422 10.75933 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.028360 B = 0.001814 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.055893 B =15431.441788 C =15811.601870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 H 0.049 0.951 4 N -0.656 5.656 5 C 0.050 3.950 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.142 3.858 18 H 0.090 0.910 19 C -0.158 4.158 20 N -0.717 5.717 21 C 0.591 3.409 22 O -0.517 6.517 23 C -0.317 4.317 24 S 0.254 5.746 25 C -0.207 4.207 26 C -0.178 4.178 27 C 0.164 3.836 28 F -0.102 7.102 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.352 0.648 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.396 0.604 41 H 0.181 0.819 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 5.461 -27.630 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 H 0.067 0.933 4 N -0.290 5.290 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.428 4.428 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.038 3.962 18 H 0.108 0.892 19 C -0.216 4.216 20 N -0.370 5.370 21 C 0.376 3.624 22 O -0.394 6.394 23 C -0.438 4.438 24 S 0.520 5.480 25 C -0.345 4.345 26 C -0.210 4.210 27 C 0.130 3.870 28 F -0.080 7.080 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.173 0.827 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.232 0.768 41 H 0.199 0.801 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.915 4.467 -26.308 28.830 hybrid contribution 1.729 0.708 -0.651 1.978 sum -9.186 5.175 -26.959 28.947 Atomic orbital electron populations 1.21895 0.94446 1.03045 1.00892 1.21726 0.96580 0.95977 0.89218 0.93347 1.60196 1.35012 1.31657 1.02104 1.21737 1.01369 0.93891 0.91222 1.19773 0.84983 0.88205 0.84406 1.90530 1.55245 1.16098 1.84726 1.41859 1.57767 1.12440 1.07974 1.19706 1.39886 0.96469 0.86761 0.87898 1.25264 0.97669 0.95803 0.99259 1.69614 1.48672 1.08877 1.27190 0.85851 0.78770 0.79519 0.80116 1.20432 1.20938 1.19393 1.21149 0.98852 0.93562 0.82607 0.89162 1.22139 1.02166 0.94387 1.02938 1.45993 1.25689 1.57307 1.08059 1.16641 0.84297 0.79733 0.81718 1.90909 1.21518 1.42086 1.84874 1.24698 1.04719 1.16152 0.98268 1.83105 1.15593 1.46163 1.03151 1.25128 1.02418 1.05974 1.00988 1.19885 0.95966 1.03205 1.01976 1.16920 0.83752 0.95083 0.91292 1.91596 1.42968 1.80013 1.93452 0.93439 0.91006 0.91828 0.82742 0.93773 0.89501 0.77480 0.91891 0.89733 0.92050 0.92724 0.76766 0.80118 0.82288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.93 37.16 0.33 -1.10 16 2 C 0.08 0.88 2.66 -67.71 -0.18 0.70 16 3 H 0.05 0.55 7.80 -51.93 -0.40 0.14 16 4 N -0.66 -10.02 5.14 -107.99 -0.55 -10.57 16 5 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 6 C 0.44 10.27 7.82 -10.99 -0.09 10.18 16 7 O -0.58 -15.64 15.78 5.55 0.09 -15.55 16 8 N -0.56 -14.19 5.29 -10.97 -0.06 -14.24 16 9 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 10 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 13 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 17 C 0.14 1.66 2.30 -67.93 -0.16 1.50 16 18 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 19 C -0.16 -1.90 9.02 37.16 0.34 -1.56 16 20 N -0.72 -7.24 4.98 -55.23 -0.28 -7.52 16 21 C 0.59 7.28 7.74 -13.02 -0.10 7.18 16 22 O -0.52 -8.48 15.80 5.16 0.08 -8.39 16 23 C -0.32 -3.07 6.45 -36.82 -0.24 -3.31 16 24 S 0.25 1.32 22.14 -107.50 -2.38 -1.06 16 25 C -0.21 -0.89 10.91 29.15 0.32 -0.58 16 26 C -0.18 -1.12 10.15 -41.35 -0.42 -1.54 16 27 C 0.16 1.62 7.48 -40.25 -0.30 1.32 16 28 F -0.10 -1.28 16.42 2.25 0.04 -1.24 16 29 H 0.05 0.34 6.29 -51.93 -0.33 0.01 16 30 H 0.07 0.76 6.56 -51.93 -0.34 0.42 16 31 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 32 H 0.35 5.71 7.62 -39.29 -0.30 5.41 16 33 H 0.04 0.69 8.05 -51.93 -0.42 0.27 16 34 H 0.09 1.35 7.44 -51.93 -0.39 0.96 16 35 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 36 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.08 1.12 7.17 -51.93 -0.37 0.75 16 38 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.40 3.00 5.68 -40.82 -0.23 2.77 16 41 H 0.18 0.22 8.06 -52.48 -0.42 -0.21 16 42 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -34.13 369.90 -7.56 -41.69 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.00 Total: 13.37 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.77 Total: 5.64 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.16 Total: -56.09 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.17 Total: -23.95 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.38 Total: -1.06 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.13 -7.56 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329028904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.813 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds