Wall clock time and date at job start Wed Apr 1 2020 02:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47357 * 2 1 4 4 N 1.46905 * 109.47447 * 119.99999 * 2 1 3 5 5 C 1.46897 * 110.99994 * 274.99981 * 4 2 1 6 6 C 1.50696 * 109.47291 * 179.97438 * 5 4 2 7 7 O 1.21292 * 119.99988 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00061 * 180.02562 * 6 5 4 9 9 C 1.37104 * 120.00247 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99370 * 359.97438 * 9 8 6 11 11 C 1.38944 * 120.00430 * 180.02562 * 9 8 6 12 12 N 1.31413 * 119.99841 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00208 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47609 * 89.99201 * 13 11 9 15 15 H 1.48500 * 109.46997 * 209.99843 * 13 11 9 16 16 H 1.48503 * 109.46658 * 329.99448 * 13 11 9 17 17 C 1.53006 * 109.47270 * 240.00203 * 2 1 3 18 18 H 1.08997 * 109.47052 * 174.99899 * 17 2 1 19 19 C 1.53004 * 109.46981 * 294.99801 * 17 2 1 20 20 N 1.46496 * 109.46987 * 54.99463 * 17 2 1 21 21 C 1.34777 * 119.99613 * 154.99881 * 20 17 2 22 22 O 1.21735 * 120.00460 * 0.02562 * 21 20 17 23 23 C 1.46296 * 120.00111 * 179.97438 * 21 20 17 24 24 S 1.75822 * 125.46197 * 0.03214 * 23 21 20 25 25 C 1.70596 * 91.60789 * 179.97438 * 24 23 21 26 26 C 1.33733 * 111.03896 * 0.02562 * 25 24 23 27 27 C 1.36926 * 125.46634 * 179.71735 * 23 21 20 28 28 F 1.35098 * 123.40488 * 0.02591 * 27 23 21 29 29 H 1.09000 * 109.47194 * 59.99986 * 1 2 3 30 30 H 1.09004 * 109.46920 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47052 * 299.99837 * 1 2 3 32 32 H 1.00903 * 110.99860 * 151.04321 * 4 2 1 33 33 H 1.08995 * 109.47277 * 300.00116 * 5 4 2 34 34 H 1.09001 * 109.46962 * 59.99782 * 5 4 2 35 35 H 0.97004 * 120.00387 * 0.02562 * 8 6 5 36 36 H 0.97003 * 119.99794 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.47097 * 300.00051 * 19 17 2 38 38 H 1.09005 * 109.46965 * 59.99860 * 19 17 2 39 39 H 1.08998 * 109.47107 * 179.97438 * 19 17 2 40 40 H 0.96996 * 120.00516 * 335.00866 * 20 17 2 41 41 H 1.08005 * 124.48215 * 179.97438 * 25 24 23 42 42 H 1.08006 * 122.45135 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5875 -0.5218 3.5560 7 8 2.8679 -1.6987 3.4702 8 7 2.7274 0.1203 4.7326 9 6 3.1873 -0.5568 5.8326 10 1 3.4370 -1.6048 5.7561 11 6 3.3311 0.1050 7.0458 12 7 3.0268 1.3800 7.1389 13 14 3.9584 -0.8174 8.5442 14 1 5.4392 -0.7222 8.6001 15 1 3.3771 -0.2191 9.7728 16 1 3.5573 -2.2441 8.4509 17 6 2.0400 -0.7212 -1.2493 18 1 3.1263 -0.6443 -1.2952 19 6 1.6353 -2.1955 -1.1880 20 7 1.4558 -0.1037 -2.4424 21 6 2.0912 -0.1937 -3.6275 22 8 3.1504 -0.7886 -3.7067 23 6 1.5076 0.4225 -4.8191 24 16 -0.0084 1.3116 -4.8692 25 6 0.1628 1.6040 -6.5412 26 6 1.2909 1.0604 -7.0106 27 6 2.0574 0.4045 -6.0731 28 9 3.2307 -0.1995 -6.3622 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.9174 -1.1205 1.0287 33 1 2.7588 1.0462 2.1182 34 1 1.0871 0.6163 2.5525 35 1 2.5028 1.0614 4.8014 36 1 3.1276 1.8421 7.9858 37 1 2.0699 -2.6550 -0.3003 38 1 0.5489 -2.2724 -1.1421 39 1 1.9982 -2.7092 -2.0782 40 1 0.6118 0.3702 -2.3794 41 1 -0.5465 2.1546 -7.1414 42 1 1.5823 1.1351 -8.0479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329028904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:02 Heat of formation + Delta-G solvation = -104.709407 kcal Electronic energy + Delta-G solvation = -26668.573209 eV Core-core repulsion = 22495.959397 eV Total energy + Delta-G solvation = -4172.613812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.115 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.01476 -41.17626 -40.17644 -38.80204 -38.11618 -36.06772 -35.40553 -33.28616 -32.54081 -30.75614 -29.94796 -28.14135 -26.34052 -26.05917 -24.78610 -22.69424 -21.16459 -21.08053 -20.58993 -20.00145 -19.86790 -18.25790 -17.68299 -17.36842 -17.10278 -16.99709 -16.69252 -16.41340 -16.11332 -15.86513 -15.65760 -15.54152 -15.23926 -15.05409 -14.75104 -14.48142 -14.25884 -13.81852 -13.53957 -13.47358 -13.42497 -13.12393 -13.09533 -12.96186 -12.83722 -12.55141 -12.41000 -12.19256 -12.12076 -11.97114 -11.71190 -11.50206 -11.32914 -10.43445 -10.31955 -10.00805 -9.98585 -9.50904 -9.38773 -8.46367 -5.94762 -0.75424 0.24496 0.70745 1.11008 1.38136 1.42028 1.54611 1.84904 1.92697 2.06301 2.29950 2.94276 3.21035 3.22645 3.46163 3.56363 3.65741 3.89830 3.91534 4.15374 4.30803 4.34271 4.43342 4.46746 4.58266 4.63552 4.67967 4.75028 4.80857 4.83790 4.95148 5.03259 5.16936 5.23056 5.34504 5.41612 5.49591 5.87633 6.08582 6.30058 6.31499 6.60753 6.99320 7.13379 7.57107 8.12629 8.70972 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.028360 B = 0.001814 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.055893 B =15431.441788 C =15811.601870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.081 3.919 3 H 0.061 0.939 4 N -0.667 5.667 5 C 0.066 3.934 6 C 0.438 3.562 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.333 4.333 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.270 1.270 16 H -0.274 1.274 17 C 0.149 3.851 18 H 0.068 0.932 19 C -0.151 4.151 20 N -0.701 5.701 21 C 0.587 3.413 22 O -0.572 6.572 23 C -0.361 4.361 24 S 0.323 5.677 25 C -0.183 4.183 26 C -0.193 4.193 27 C 0.141 3.859 28 F -0.129 7.129 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.343 0.657 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.411 0.589 41 H 0.223 0.777 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.836 7.639 -28.641 32.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 H 0.079 0.921 4 N -0.301 5.301 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.560 5.560 13 Si 0.816 3.184 14 H -0.198 1.198 15 H -0.195 1.195 16 H -0.199 1.199 17 C 0.044 3.956 18 H 0.086 0.914 19 C -0.209 4.209 20 N -0.355 5.355 21 C 0.375 3.625 22 O -0.453 6.453 23 C -0.482 4.482 24 S 0.590 5.410 25 C -0.321 4.321 26 C -0.223 4.223 27 C 0.105 3.895 28 F -0.108 7.108 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.250 0.750 41 H 0.240 0.760 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.589 6.697 -27.323 31.242 hybrid contribution 2.446 0.075 -0.425 2.484 sum -11.143 6.772 -27.749 30.660 Atomic orbital electron populations 1.21922 0.92534 1.03172 1.02565 1.21772 0.97857 0.95937 0.87282 0.92107 1.60236 1.34636 1.32054 1.03134 1.21596 1.02601 0.93559 0.88893 1.20877 0.83188 0.87987 0.85426 1.90501 1.56568 1.18248 1.85588 1.41922 1.58322 1.12607 1.08206 1.19654 1.42079 0.95951 0.88580 0.90406 1.26023 0.97286 0.96659 1.01345 1.69668 1.48600 1.09638 1.28143 0.84939 0.78418 0.78032 0.77015 1.19766 1.19458 1.19854 1.20933 0.97785 0.93492 0.83414 0.91403 1.22045 1.02851 0.94528 1.01464 1.45774 1.25920 1.56800 1.07026 1.17073 0.83690 0.79012 0.82773 1.90871 1.23980 1.44624 1.85803 1.24665 1.07824 1.18572 0.97089 1.82814 1.11485 1.43396 1.03333 1.25693 1.01703 1.03755 1.00961 1.20009 0.96322 1.03646 1.02352 1.17563 0.83496 0.95896 0.92584 1.91516 1.44761 1.80786 1.93705 0.90121 0.91687 0.91819 0.83769 0.91655 0.87195 0.76925 0.91310 0.91358 0.90577 0.94030 0.75010 0.76042 0.80501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.93 71.98 0.64 -1.79 16 2 C 0.08 1.76 2.66 44.91 0.12 1.88 16 3 H 0.06 1.21 7.80 -2.39 -0.02 1.20 16 4 N -0.67 -20.07 5.14 -495.58 -2.55 -22.61 16 5 C 0.07 2.16 5.96 85.56 0.51 2.67 16 6 C 0.44 20.62 7.82 87.66 0.69 21.31 16 7 O -0.62 -34.49 15.78 -3.07 -0.05 -34.54 16 8 N -0.57 -29.25 5.29 -306.99 -1.62 -30.87 16 9 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 10 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 11 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 12 N -0.92 -49.46 13.05 21.66 0.28 -49.18 16 13 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 15 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 C 0.15 3.45 2.30 45.00 0.10 3.56 16 18 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 19 C -0.15 -3.71 9.02 71.98 0.65 -3.06 16 20 N -0.70 -13.57 4.98 -446.85 -2.23 -15.79 16 21 C 0.59 14.78 7.74 86.34 0.67 15.45 16 22 O -0.57 -20.09 15.80 -4.46 -0.07 -20.16 16 23 C -0.36 -6.76 6.45 24.06 0.16 -6.61 16 24 S 0.32 2.23 22.14 -56.49 -1.25 0.98 16 25 C -0.18 -0.82 10.91 66.80 0.73 -0.09 16 26 C -0.19 -2.01 10.15 21.12 0.21 -1.79 16 27 C 0.14 2.78 7.48 21.84 0.16 2.94 16 28 F -0.13 -3.47 16.42 44.97 0.74 -2.74 16 29 H 0.08 0.81 6.29 -2.39 -0.02 0.80 16 30 H 0.06 1.22 6.56 -2.39 -0.02 1.20 16 31 H 0.06 1.12 7.45 -2.39 -0.02 1.10 16 32 H 0.34 11.41 7.62 -89.69 -0.68 10.73 16 33 H 0.07 1.90 8.05 -2.39 -0.02 1.89 16 34 H 0.11 3.15 7.44 -2.39 -0.02 3.14 16 35 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 36 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 37 H 0.07 1.90 7.17 -2.39 -0.02 1.89 16 38 H 0.08 1.61 6.56 -2.38 -0.02 1.60 16 39 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.41 5.17 5.68 -92.71 -0.53 4.65 16 41 H 0.22 -0.83 8.06 -2.91 -0.02 -0.85 16 42 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -78.84 369.90 0.37 -78.47 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -0.83 Total: 35.19 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 5.92 Total: 16.07 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -6.11 Total: -118.46 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -0.12 Total: -54.70 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.74 Total: -2.74 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.25 Total: 0.98 kcal Total: -78.84 0.37 -78.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329028904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.238 kcal (2) G-P(sol) polarization free energy of solvation -78.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds