Wall clock time and date at job start Wed Apr 1 2020 01:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46841 * 2 1 4 4 N 1.46907 * 109.47192 * 119.99482 * 2 1 3 5 5 C 1.46899 * 111.00065 * 275.00263 * 4 2 1 6 6 C 1.52994 * 109.46927 * 180.02562 * 5 4 2 7 7 H 1.08994 * 109.47430 * 60.00287 * 6 5 4 8 8 O 1.42895 * 109.47385 * 299.99744 * 6 5 4 9 9 C 1.53006 * 109.47187 * 179.97438 * 6 5 4 10 10 S 1.81395 * 109.47334 * 184.99756 * 9 6 5 11 11 C 1.81403 * 101.92026 * 179.97438 * 10 9 6 12 12 O 1.42093 * 108.57967 * 294.48879 * 10 9 6 13 13 O 1.42107 * 108.57381 * 65.51727 * 10 9 6 14 14 C 1.50693 * 109.46894 * 239.99838 * 2 1 3 15 15 C 1.38308 * 119.92999 * 279.72248 * 14 2 1 16 16 C 1.38103 * 120.06895 * 179.72879 * 15 14 2 17 17 C 1.38876 * 119.92560 * 0.54853 * 16 15 14 18 18 O 1.35757 * 120.06677 * 179.75172 * 17 16 15 19 19 C 1.34817 * 117.00279 * 174.44193 * 18 17 16 20 20 H 1.08007 * 119.99996 * 5.05108 * 19 18 17 21 21 C 1.38657 * 120.00320 * 185.05185 * 19 18 17 22 22 N 1.31557 * 120.00065 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99732 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47367 * 89.99863 * 23 21 19 25 25 H 1.48501 * 109.46962 * 209.99750 * 23 21 19 26 26 H 1.48503 * 109.46857 * 329.99529 * 23 21 19 27 27 C 1.38880 * 119.86695 * 359.72410 * 17 16 15 28 28 C 1.38091 * 119.93015 * 0.02562 * 27 17 16 29 29 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47435 * 300.00000 * 1 2 3 31 31 H 1.08994 * 109.47553 * 60.00281 * 1 2 3 32 32 H 1.00897 * 110.99724 * 38.95232 * 4 2 1 33 33 H 1.09005 * 109.47059 * 59.99512 * 5 4 2 34 34 H 1.09001 * 109.46668 * 300.00033 * 5 4 2 35 35 H 0.96700 * 114.00041 * 300.00108 * 8 6 5 36 36 H 1.09005 * 109.47064 * 305.00357 * 9 6 5 37 37 H 1.09001 * 109.46826 * 64.99720 * 9 6 5 38 38 H 1.09000 * 109.47266 * 60.00389 * 11 10 9 39 39 H 1.08998 * 109.46955 * 180.02562 * 11 10 9 40 40 H 1.08993 * 109.47453 * 300.00045 * 11 10 9 41 41 H 1.08002 * 119.96611 * 0.02562 * 15 14 2 42 42 H 1.07997 * 120.03246 * 180.27563 * 16 15 14 43 43 H 0.97004 * 119.99716 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.03297 * 179.97438 * 27 17 16 45 45 H 1.07998 * 119.96677 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5962 -0.5326 3.5742 7 1 3.5917 -0.9259 3.3684 8 8 1.7100 -1.6126 3.8743 9 6 2.6622 0.4207 4.7691 10 16 3.4091 -0.4341 6.1841 11 6 3.3868 0.8583 7.4569 12 8 2.5409 -1.4837 6.5887 13 8 4.7616 -0.7349 5.8687 14 6 2.0323 -0.7104 -1.2304 15 6 2.0714 -2.0926 -1.2615 16 6 2.5259 -2.7467 -2.3897 17 6 2.9546 -2.0149 -3.4894 18 8 3.4066 -2.6549 -4.5980 19 6 3.6984 -1.8908 -5.6698 20 1 3.6472 -0.8145 -5.5956 21 6 4.0642 -2.4866 -6.8672 22 7 4.3484 -1.7409 -7.9131 23 14 4.1520 -4.3481 -6.9956 24 1 2.8318 -4.8778 -7.4219 25 1 5.1834 -4.7272 -7.9944 26 1 4.5107 -4.9191 -5.6725 27 6 2.9194 -0.6270 -3.4530 28 6 2.4589 0.0211 -2.3238 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 1.4496 -1.4978 1.4102 33 1 1.0870 0.6165 2.5525 34 1 2.7588 1.0463 2.1181 35 1 0.8041 -1.3357 4.0683 36 1 3.2674 1.2889 4.5083 37 1 1.6551 0.7453 5.0310 38 1 2.3586 1.1704 7.6399 39 1 3.8179 0.4678 8.3787 40 1 3.9710 1.7133 7.1168 41 1 1.7417 -2.6611 -0.4045 42 1 2.5520 -3.8261 -2.4150 43 1 4.6039 -2.1578 -8.7509 44 1 3.2525 -0.0553 -4.3065 45 1 2.4309 1.1003 -2.2950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647438202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:51 Heat of formation + Delta-G solvation = -116.828759 kcal Electronic energy + Delta-G solvation = -27082.504191 eV Core-core repulsion = 23000.532399 eV Total energy + Delta-G solvation = -4081.971792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -39.40979 -38.69856 -37.38157 -37.29673 -36.36622 -35.37076 -32.51472 -32.22947 -30.63925 -30.20451 -29.91304 -28.11507 -25.90083 -25.26504 -22.56291 -22.40826 -21.75725 -20.00638 -19.32436 -17.84086 -17.63819 -17.25534 -17.06239 -16.80742 -16.13373 -16.00363 -15.47016 -15.24549 -14.63099 -14.57462 -14.01167 -13.85294 -13.81046 -13.74293 -13.72755 -13.50229 -13.15499 -13.03820 -12.77910 -12.57419 -12.42691 -12.35022 -12.25326 -12.16571 -12.03645 -11.80798 -11.50067 -11.40166 -11.33470 -11.14912 -10.82813 -10.66085 -10.60006 -10.30087 -10.10304 -9.34998 -8.83401 -8.49338 -8.19384 -7.25211 -6.38798 -4.05094 -0.51426 2.18718 2.26088 2.27847 3.12077 3.24697 3.28193 3.43763 3.45769 3.73812 3.87199 4.16775 4.24483 4.26719 4.32103 4.47848 4.53697 4.59524 4.75586 4.88850 4.92786 5.02490 5.08186 5.12286 5.19689 5.31425 5.36129 5.49799 5.61420 5.70171 5.77818 5.89458 6.07437 6.18599 6.37884 6.61144 6.76594 6.89708 7.11765 7.14522 7.31808 7.33127 7.37332 7.65799 7.83436 8.07422 8.96917 9.60451 10.68937 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.001863 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.233619 B =15022.109244 C =15451.761874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.140 3.860 3 H 0.076 0.924 4 N -0.676 5.676 5 C 0.036 3.964 6 C 0.119 3.881 7 H 0.126 0.874 8 O -0.545 6.545 9 C -0.654 4.654 10 S 2.430 3.570 11 C -0.663 4.663 12 O -0.923 6.923 13 O -0.935 6.935 14 C -0.161 4.161 15 C -0.054 4.054 16 C -0.193 4.193 17 C 0.159 3.841 18 O -0.219 6.219 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.062 3.938 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.259 1.259 27 C -0.221 4.221 28 C -0.070 4.070 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.348 0.652 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.377 0.623 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.279 0.721 44 H 0.132 0.868 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.477 9.172 29.078 31.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.094 0.906 4 N -0.308 5.308 5 C -0.095 4.095 6 C 0.058 3.942 7 H 0.144 0.856 8 O -0.350 6.350 9 C -0.783 4.783 10 S 2.610 3.390 11 C -0.812 4.812 12 O -0.920 6.920 13 O -0.932 6.932 14 C -0.162 4.162 15 C -0.073 4.073 16 C -0.212 4.212 17 C 0.107 3.893 18 O -0.124 6.124 19 C -0.464 4.464 20 H 0.123 0.877 21 C -0.141 4.141 22 N -0.519 5.519 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.240 4.240 28 C -0.088 4.088 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.168 0.832 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.224 0.776 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.089 0.911 44 H 0.149 0.851 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.844 7.808 28.606 30.223 hybrid contribution -1.622 1.007 -0.003 1.909 sum -7.466 8.815 28.603 30.847 Atomic orbital electron populations 1.22498 0.97132 1.02316 1.01567 1.20218 0.91903 0.96725 0.88067 0.90577 1.60496 1.58513 1.09290 1.02495 1.22580 0.99872 0.96084 0.90919 1.21679 0.96715 0.86127 0.89635 0.85637 1.86771 1.23634 1.32998 1.91595 1.31168 1.14739 1.13904 1.18444 1.07705 0.75968 0.77376 0.77912 1.30366 1.11397 1.19980 1.19419 1.93618 1.67650 1.49887 1.80890 1.93625 1.33907 1.82391 1.83294 1.19101 1.08569 0.93583 0.94951 1.20337 0.97683 0.93426 0.95833 1.20219 1.08347 0.99285 0.93398 1.19139 0.91683 0.90954 0.87518 1.83574 1.72754 1.36633 1.19466 1.20757 1.46696 0.92139 0.86801 0.87694 1.24467 0.95732 1.00213 0.93661 1.69650 1.44492 1.36157 1.01639 0.86179 0.78215 0.83713 0.78786 1.19944 1.20832 1.18325 1.21214 1.08368 0.94330 1.00066 1.20574 0.97285 0.98269 0.92695 0.92191 0.93530 0.91685 0.83192 0.94822 0.89798 0.77571 0.83861 0.84709 0.85486 0.85215 0.85420 0.87058 0.86661 0.91117 0.85071 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.14 37.16 0.34 -1.44 16 2 C 0.14 1.66 2.79 -68.86 -0.19 1.46 16 3 H 0.08 0.86 7.66 -51.93 -0.40 0.46 16 4 N -0.68 -7.24 5.70 -107.95 -0.61 -7.86 16 5 C 0.04 0.27 5.19 -3.83 -0.02 0.25 16 6 C 0.12 0.86 3.23 -26.73 -0.09 0.78 16 7 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 8 O -0.55 -4.51 11.76 -43.32 -0.51 -5.02 16 9 C -0.65 -2.22 5.47 37.16 0.20 -2.02 16 10 S 2.43 14.02 5.29 -107.50 -0.57 13.45 16 11 C -0.66 -1.31 10.62 101.05 1.07 -0.24 16 12 O -0.92 -9.00 17.32 -62.44 -1.08 -10.08 16 13 O -0.94 -9.73 18.10 -57.83 -1.05 -10.77 16 14 C -0.16 -2.57 4.96 -104.58 -0.52 -3.08 16 15 C -0.05 -0.92 9.32 -39.61 -0.37 -1.29 16 16 C -0.19 -3.89 9.99 -39.39 -0.39 -4.28 16 17 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 18 O -0.22 -5.87 8.59 0.06 0.00 -5.86 16 19 C -0.39 -11.04 9.95 30.89 0.31 -10.74 16 20 H 0.11 3.04 5.44 -52.48 -0.29 2.75 16 21 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 22 N -0.88 -25.63 13.96 55.48 0.77 -24.86 16 23 Si 0.91 21.97 28.62 -169.99 -4.86 17.11 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 27 C -0.22 -4.76 9.17 -39.40 -0.36 -5.12 16 28 C -0.07 -1.23 9.66 -39.61 -0.38 -1.62 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.05 0.38 7.45 -51.93 -0.39 -0.01 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.35 3.60 7.20 -39.29 -0.28 3.32 16 33 H 0.03 0.20 7.44 -51.93 -0.39 -0.19 16 34 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 35 H 0.38 1.65 9.05 45.56 0.41 2.06 16 36 H 0.14 0.16 8.14 -51.92 -0.42 -0.26 16 37 H 0.13 0.06 8.14 -51.92 -0.42 -0.37 16 38 H 0.13 0.00 8.14 -51.92 -0.42 -0.42 16 39 H 0.13 0.26 8.14 -51.92 -0.42 -0.17 16 40 H 0.13 0.04 8.14 -51.93 -0.42 -0.38 16 41 H 0.11 1.62 7.23 -52.49 -0.38 1.24 16 42 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.13 2.98 5.64 -52.49 -0.30 2.69 16 45 H 0.11 1.60 8.03 -52.49 -0.42 1.18 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -37.70 386.95 -8.62 -46.31 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.78 Total: 3.96 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -0.76 Total: -22.22 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.16 Total: -32.71 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -2.64 Total: -31.73 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.86 Total: 17.11 kcal Atomic # 16 Polarization: 14.02 SS G_CDS: -0.57 Total: 13.45 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.70 -8.62 -46.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647438202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.517 kcal (2) G-P(sol) polarization free energy of solvation -37.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds