Wall clock time and date at job start Wed Apr 1 2020 01:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46841 * 2 1 4 4 N 1.46907 * 109.47192 * 119.99482 * 2 1 3 5 5 C 1.46899 * 111.00065 * 275.00263 * 4 2 1 6 6 C 1.52994 * 109.46927 * 180.02562 * 5 4 2 7 7 H 1.08994 * 109.47430 * 60.00287 * 6 5 4 8 8 O 1.42895 * 109.47385 * 299.99744 * 6 5 4 9 9 C 1.53006 * 109.47187 * 179.97438 * 6 5 4 10 10 S 1.81395 * 109.47334 * 184.99756 * 9 6 5 11 11 C 1.81403 * 101.92026 * 179.97438 * 10 9 6 12 12 O 1.42093 * 108.57967 * 294.48879 * 10 9 6 13 13 O 1.42107 * 108.57381 * 65.51727 * 10 9 6 14 14 C 1.50693 * 109.46894 * 239.99838 * 2 1 3 15 15 C 1.38308 * 119.92999 * 279.72248 * 14 2 1 16 16 C 1.38103 * 120.06895 * 179.72879 * 15 14 2 17 17 C 1.38876 * 119.92560 * 0.54853 * 16 15 14 18 18 O 1.35757 * 120.06677 * 179.75172 * 17 16 15 19 19 C 1.34817 * 117.00279 * 174.44193 * 18 17 16 20 20 H 1.08007 * 119.99996 * 5.05108 * 19 18 17 21 21 C 1.38657 * 120.00320 * 185.05185 * 19 18 17 22 22 N 1.31557 * 120.00065 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99732 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47367 * 89.99863 * 23 21 19 25 25 H 1.48501 * 109.46962 * 209.99750 * 23 21 19 26 26 H 1.48503 * 109.46857 * 329.99529 * 23 21 19 27 27 C 1.38880 * 119.86695 * 359.72410 * 17 16 15 28 28 C 1.38091 * 119.93015 * 0.02562 * 27 17 16 29 29 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47435 * 300.00000 * 1 2 3 31 31 H 1.08994 * 109.47553 * 60.00281 * 1 2 3 32 32 H 1.00897 * 110.99724 * 38.95232 * 4 2 1 33 33 H 1.09005 * 109.47059 * 59.99512 * 5 4 2 34 34 H 1.09001 * 109.46668 * 300.00033 * 5 4 2 35 35 H 0.96700 * 114.00041 * 300.00108 * 8 6 5 36 36 H 1.09005 * 109.47064 * 305.00357 * 9 6 5 37 37 H 1.09001 * 109.46826 * 64.99720 * 9 6 5 38 38 H 1.09000 * 109.47266 * 60.00389 * 11 10 9 39 39 H 1.08998 * 109.46955 * 180.02562 * 11 10 9 40 40 H 1.08993 * 109.47453 * 300.00045 * 11 10 9 41 41 H 1.08002 * 119.96611 * 0.02562 * 15 14 2 42 42 H 1.07997 * 120.03246 * 180.27563 * 16 15 14 43 43 H 0.97004 * 119.99716 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.03297 * 179.97438 * 27 17 16 45 45 H 1.07998 * 119.96677 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5962 -0.5326 3.5742 7 1 3.5917 -0.9259 3.3684 8 8 1.7100 -1.6126 3.8743 9 6 2.6622 0.4207 4.7691 10 16 3.4091 -0.4341 6.1841 11 6 3.3868 0.8583 7.4569 12 8 2.5409 -1.4837 6.5887 13 8 4.7616 -0.7349 5.8687 14 6 2.0323 -0.7104 -1.2304 15 6 2.0714 -2.0926 -1.2615 16 6 2.5259 -2.7467 -2.3897 17 6 2.9546 -2.0149 -3.4894 18 8 3.4066 -2.6549 -4.5980 19 6 3.6984 -1.8908 -5.6698 20 1 3.6472 -0.8145 -5.5956 21 6 4.0642 -2.4866 -6.8672 22 7 4.3484 -1.7409 -7.9131 23 14 4.1520 -4.3481 -6.9956 24 1 2.8318 -4.8778 -7.4219 25 1 5.1834 -4.7272 -7.9944 26 1 4.5107 -4.9191 -5.6725 27 6 2.9194 -0.6270 -3.4530 28 6 2.4589 0.0211 -2.3238 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 1.4496 -1.4978 1.4102 33 1 1.0870 0.6165 2.5525 34 1 2.7588 1.0463 2.1181 35 1 0.8041 -1.3357 4.0683 36 1 3.2674 1.2889 4.5083 37 1 1.6551 0.7453 5.0310 38 1 2.3586 1.1704 7.6399 39 1 3.8179 0.4678 8.3787 40 1 3.9710 1.7133 7.1168 41 1 1.7417 -2.6611 -0.4045 42 1 2.5520 -3.8261 -2.4150 43 1 4.6039 -2.1578 -8.7509 44 1 3.2525 -0.0553 -4.3065 45 1 2.4309 1.1003 -2.2950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647438202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:50 Heat of formation + Delta-G solvation = -148.976853 kcal Electronic energy + Delta-G solvation = -27083.898237 eV Core-core repulsion = 23000.532399 eV Total energy + Delta-G solvation = -4083.365838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.94436 -39.58215 -38.59655 -37.91201 -36.92475 -36.49527 -34.43527 -33.01424 -31.86007 -31.27844 -30.24912 -29.39040 -27.24538 -26.46875 -23.88675 -23.59671 -22.63709 -21.38801 -19.80774 -19.67571 -19.09602 -18.22937 -17.51170 -17.25079 -16.96007 -16.65856 -16.50750 -16.24036 -15.97210 -15.70117 -15.57072 -15.29738 -15.13080 -14.52886 -14.34863 -14.12225 -14.07271 -13.93822 -13.87736 -13.85405 -13.59263 -13.35361 -13.01109 -12.99490 -12.93447 -12.72351 -12.63375 -12.38638 -12.34115 -12.10795 -12.05507 -11.83832 -11.78360 -11.68048 -11.24568 -10.91925 -10.85312 -9.75929 -9.26793 -8.91016 -8.49444 -6.21204 -0.87922 0.61287 0.69817 1.30732 1.34802 1.51724 1.96365 2.28357 2.69113 2.79240 3.06623 3.13485 3.17455 3.27032 3.48411 3.79513 3.90526 3.99645 4.01694 4.11615 4.13592 4.19462 4.24620 4.38006 4.39669 4.43860 4.62211 4.69294 4.72963 4.81426 4.88358 4.94116 5.00354 5.01534 5.06870 5.27357 5.31512 5.44126 5.59688 5.77012 5.82986 5.93914 6.19303 6.30366 6.54602 6.81797 6.85367 7.61684 8.62212 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.001863 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.233619 B =15022.109244 C =15451.761874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.144 3.856 3 H 0.091 0.909 4 N -0.695 5.695 5 C 0.038 3.962 6 C 0.112 3.888 7 H 0.095 0.905 8 O -0.568 6.568 9 C -0.633 4.633 10 S 2.417 3.583 11 C -0.640 4.640 12 O -0.977 6.977 13 O -0.998 6.998 14 C -0.134 4.134 15 C -0.051 4.051 16 C -0.196 4.196 17 C 0.114 3.886 18 O -0.249 6.249 19 C -0.397 4.397 20 H 0.081 0.919 21 C 0.009 3.991 22 N -0.923 5.923 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.267 1.267 26 H -0.266 1.266 27 C -0.236 4.236 28 C -0.072 4.072 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.350 0.650 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.392 0.608 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.157 0.843 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.143 0.857 42 H 0.122 0.878 43 H 0.284 0.716 44 H 0.107 0.893 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 10.987 32.663 35.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.034 3.966 3 H 0.109 0.891 4 N -0.328 5.328 5 C -0.092 4.092 6 C 0.052 3.948 7 H 0.113 0.887 8 O -0.376 6.376 9 C -0.764 4.764 10 S 2.605 3.395 11 C -0.793 4.793 12 O -0.974 6.974 13 O -0.996 6.996 14 C -0.135 4.135 15 C -0.069 4.069 16 C -0.215 4.215 17 C 0.066 3.934 18 O -0.157 6.157 19 C -0.474 4.474 20 H 0.099 0.901 21 C -0.190 4.190 22 N -0.565 5.565 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.191 1.191 26 H -0.190 1.190 27 C -0.256 4.256 28 C -0.090 4.090 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.170 0.830 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.243 0.757 36 H 0.191 0.809 37 H 0.194 0.806 38 H 0.175 0.825 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.161 0.839 42 H 0.140 0.860 43 H 0.094 0.906 44 H 0.125 0.875 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.956 9.601 32.237 34.564 hybrid contribution -1.116 0.670 -0.745 1.500 sum -9.073 10.270 31.492 34.344 Atomic orbital electron populations 1.22428 0.95232 1.02542 1.02761 1.20191 0.93163 0.96675 0.86525 0.89112 1.60368 1.58814 1.10221 1.03369 1.22647 1.01690 0.95428 0.89405 1.21610 0.95301 0.86573 0.91348 0.88725 1.86746 1.24964 1.34139 1.91775 1.30945 1.17419 1.13223 1.14825 1.07563 0.74288 0.78378 0.79316 1.30140 1.14003 1.18212 1.16936 1.93553 1.68054 1.53695 1.82097 1.93550 1.36891 1.84424 1.84697 1.19740 1.04403 0.93441 0.95920 1.20731 0.96348 0.94284 0.95509 1.20517 1.07841 0.99865 0.93289 1.19670 0.93913 0.92141 0.87691 1.83514 1.75486 1.36685 1.20009 1.20705 1.47098 0.91516 0.88062 0.90146 1.25268 0.95647 1.04792 0.93243 1.69729 1.46476 1.37931 1.02318 0.85224 0.78854 0.78130 0.78529 1.19022 1.19127 1.19047 1.21244 1.09458 0.93908 1.00949 1.20909 0.96361 1.00000 0.91738 0.92511 0.90492 0.92414 0.82984 0.91768 0.89135 0.75727 0.80855 0.80579 0.82482 0.85137 0.82920 0.83921 0.86000 0.90627 0.87535 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.14 71.98 0.66 -1.99 16 2 C 0.14 2.78 2.79 44.17 0.12 2.91 16 3 H 0.09 1.58 7.66 -2.39 -0.02 1.56 16 4 N -0.70 -12.20 5.70 -495.45 -2.82 -15.02 16 5 C 0.04 0.40 5.19 86.30 0.45 0.85 16 6 C 0.11 1.32 3.23 30.59 0.10 1.42 16 7 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 8 O -0.57 -8.19 11.76 -141.24 -1.66 -9.86 16 9 C -0.63 -1.71 5.47 71.98 0.39 -1.32 16 10 S 2.42 24.54 5.29 -56.49 -0.30 24.24 16 11 C -0.64 -0.07 10.62 113.37 1.20 1.14 16 12 O -0.98 -18.78 17.32 -122.96 -2.13 -20.91 16 13 O -1.00 -21.34 18.10 -127.37 -2.30 -23.65 16 14 C -0.13 -3.92 4.96 -19.83 -0.10 -4.02 16 15 C -0.05 -1.61 9.32 22.25 0.21 -1.41 16 16 C -0.20 -7.88 9.99 22.39 0.22 -7.66 16 17 C 0.11 5.56 6.65 22.58 0.15 5.71 16 18 O -0.25 -14.03 8.59 -22.69 -0.19 -14.23 16 19 C -0.40 -24.03 9.95 67.92 0.68 -23.36 16 20 H 0.08 5.07 5.44 -2.91 -0.02 5.06 16 21 C 0.01 0.51 5.49 84.83 0.47 0.97 16 22 N -0.92 -56.08 13.96 21.61 0.30 -55.78 16 23 Si 0.97 46.78 28.62 68.60 1.96 48.75 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 27 C -0.24 -10.60 9.17 22.39 0.21 -10.39 16 28 C -0.07 -2.46 9.66 22.25 0.21 -2.24 16 29 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 30 H 0.08 0.78 7.45 -2.38 -0.02 0.76 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.35 5.93 7.20 -89.70 -0.65 5.29 16 33 H 0.06 0.32 7.44 -2.38 -0.02 0.31 16 34 H 0.09 0.85 8.06 -2.39 -0.02 0.84 16 35 H 0.39 2.21 9.05 -74.06 -0.67 1.54 16 36 H 0.17 -0.53 8.14 -2.39 -0.02 -0.54 16 37 H 0.18 -0.95 8.14 -2.39 -0.02 -0.97 16 38 H 0.16 -0.84 8.14 -2.39 -0.02 -0.86 16 39 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.15 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.14 3.69 7.23 -2.91 -0.02 3.67 16 42 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 43 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 44 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 45 H 0.14 3.80 8.03 -2.91 -0.02 3.78 16 Total: -1.00 -90.12 386.95 -2.47 -92.59 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -0.29 Total: 13.27 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 4.97 Total: -39.40 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -2.52 Total: -70.80 kcal Atomic # 8 Polarization: -62.35 SS G_CDS: -6.29 Total: -68.64 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.96 Total: 48.75 kcal Atomic # 16 Polarization: 24.54 SS G_CDS: -0.30 Total: 24.24 kcal Total: -90.12 -2.47 -92.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647438202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.386 kcal (2) G-P(sol) polarization free energy of solvation -90.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds