Wall clock time and date at job start Wed Apr 1 2020 02:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47393 * 2 1 4 4 C 1.52998 * 109.46694 * 120.00633 * 2 1 3 5 5 N 1.46500 * 109.46920 * 175.82179 * 4 2 1 6 6 C 1.46506 * 120.00180 * 263.86664 * 5 4 2 7 7 C 1.34780 * 120.00396 * 83.86146 * 5 4 2 8 8 O 1.21741 * 119.99825 * 359.01882 * 7 5 4 9 9 C 1.46337 * 120.00298 * 179.01295 * 7 5 4 10 10 C 1.36734 * 125.43627 * 186.98331 * 9 7 5 11 11 C 1.37349 * 113.33285 * 179.79587 * 10 9 7 12 12 C 1.34208 * 115.04048 * 0.49836 * 11 10 9 13 13 F 1.35098 * 124.53551 * 179.74311 * 12 11 10 14 14 S 1.70608 * 110.92197 * 359.72262 * 12 11 10 15 15 N 1.46898 * 109.46651 * 240.00049 * 2 1 3 16 16 C 1.46898 * 110.99875 * 87.06326 * 15 2 1 17 17 C 1.50699 * 109.47185 * 179.97438 * 16 15 2 18 18 O 1.21289 * 120.00306 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00144 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00097 * 180.02562 * 19 17 16 21 21 H 1.07994 * 119.99989 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99854 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00436 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00030 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47084 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47407 * 119.99904 * 24 22 20 27 27 H 1.48502 * 109.47474 * 240.00076 * 24 22 20 28 28 H 1.09000 * 109.46683 * 59.99393 * 1 2 3 29 29 H 1.08999 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46752 * 299.99869 * 1 2 3 31 31 H 1.08999 * 109.47333 * 295.81782 * 4 2 1 32 32 H 1.08998 * 109.47501 * 55.82008 * 4 2 1 33 33 H 1.08998 * 109.46866 * 96.15609 * 6 5 4 34 34 H 1.08998 * 109.47339 * 216.16088 * 6 5 4 35 35 H 1.09000 * 109.46607 * 336.15926 * 6 5 4 36 36 H 1.08007 * 123.33602 * 0.02562 * 10 9 7 37 37 H 1.07992 * 122.47825 * 180.24053 * 11 10 9 38 38 H 1.00907 * 110.99740 * 211.00920 * 15 2 1 39 39 H 1.09000 * 109.47471 * 299.99341 * 16 15 2 40 40 H 1.09002 * 109.47512 * 59.99600 * 16 15 2 41 41 H 0.97003 * 119.99886 * 0.02562 * 19 17 16 42 42 H 0.96997 * 120.00275 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5015 -0.8092 1.2000 6 6 4.1458 -2.0228 0.6917 7 6 4.2535 0.2266 1.6222 8 8 3.7182 1.2420 2.0277 9 6 5.7134 0.1306 1.5932 10 6 6.5789 1.0511 2.1158 11 6 7.8994 0.7095 1.9540 12 6 8.1117 -0.4486 1.3099 13 9 9.3316 -0.9640 1.0429 14 16 6.6347 -1.1831 0.8742 15 7 2.0196 -0.6925 -1.1995 16 6 2.1288 0.2338 -2.3344 17 6 2.6334 -0.5106 -3.5436 18 8 2.8775 -1.6963 -3.4677 19 7 2.8124 0.1409 -4.7099 20 6 3.2709 -0.5365 -5.8101 21 1 3.4891 -1.5920 -5.7422 22 6 3.4559 0.1353 -7.0122 23 7 3.1919 1.4200 -7.0945 24 14 4.0813 -0.7874 -8.5112 25 1 4.3019 -2.2129 -8.1585 26 1 3.0779 -0.6975 -9.6021 27 1 5.3609 -0.1855 -8.9647 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7391 -0.1662 2.1376 32 1 1.6167 -1.7251 1.2873 33 1 4.3962 -1.8878 -0.3605 34 1 5.0556 -2.2164 1.2598 35 1 3.4647 -2.8672 0.7976 36 1 6.2562 1.9555 2.6103 37 1 8.7071 1.3291 2.3145 38 1 2.9014 -1.1487 -1.0190 39 1 1.1490 0.6591 -2.5519 40 1 2.8250 1.0344 -2.0844 41 1 2.6167 1.0890 -4.7707 42 1 3.3207 1.8889 -7.9338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755620366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:43 Heat of formation + Delta-G solvation = -87.112207 kcal Electronic energy + Delta-G solvation = -27616.802756 eV Core-core repulsion = 23444.952016 eV Total energy + Delta-G solvation = -4171.850740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.115 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -50.16844 -41.36168 -40.16833 -38.81382 -37.87578 -36.19828 -35.79763 -33.30964 -32.50536 -30.66295 -28.58854 -28.14730 -27.38828 -25.91140 -25.22764 -22.72944 -21.41259 -21.12164 -20.63319 -19.92573 -19.46386 -18.13227 -17.96887 -17.78113 -17.32850 -17.03510 -16.76410 -16.50978 -16.34849 -16.10801 -15.62721 -15.57845 -15.20613 -15.11909 -14.39406 -14.28259 -14.23507 -14.11145 -13.84967 -13.50224 -13.45688 -13.32453 -13.12081 -12.93850 -12.86568 -12.78022 -12.56459 -12.39135 -12.10275 -12.00176 -11.60643 -11.51306 -11.29977 -10.35689 -10.12177 -10.02289 -9.84694 -9.62279 -9.39421 -8.46774 -5.95756 -0.80925 -0.03707 0.49990 1.07783 1.36729 1.42342 1.56568 1.73619 1.95835 2.02559 2.28611 2.87740 3.20317 3.21551 3.31632 3.49316 3.85294 3.89190 4.13411 4.18208 4.22417 4.25329 4.32030 4.38645 4.42323 4.52072 4.57415 4.65885 4.71368 4.75129 4.87039 4.96444 5.06324 5.10467 5.24013 5.41221 5.47010 5.85294 6.02328 6.09680 6.40520 6.58258 6.84338 7.11493 7.54419 8.08169 8.70987 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.009319 B = 0.003347 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.942594 B = 8364.431826 C =10425.516539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.064 3.936 3 H 0.033 0.967 4 C 0.119 3.881 5 N -0.611 5.611 6 C 0.055 3.945 7 C 0.588 3.412 8 O -0.557 6.557 9 C -0.294 4.294 10 C -0.028 4.028 11 C -0.186 4.186 12 C -0.065 4.065 13 F -0.109 7.109 14 S 0.286 5.714 15 N -0.668 5.668 16 C 0.063 3.937 17 C 0.441 3.559 18 O -0.615 6.615 19 N -0.573 5.573 20 C -0.331 4.331 21 H 0.083 0.917 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.170 0.830 37 H 0.173 0.827 38 H 0.344 0.656 39 H 0.101 0.899 40 H 0.048 0.952 41 H 0.394 0.606 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 -2.998 20.996 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 H 0.051 0.949 4 C -0.003 4.003 5 N -0.342 5.342 6 C -0.090 4.090 7 C 0.377 3.623 8 O -0.438 6.438 9 C -0.414 4.414 10 C -0.061 4.061 11 C -0.218 4.218 12 C -0.201 4.201 13 F -0.088 7.088 14 S 0.553 5.447 15 N -0.304 5.304 16 C -0.070 4.070 17 C 0.228 3.772 18 O -0.501 6.501 19 N -0.210 5.210 20 C -0.461 4.461 21 H 0.101 0.899 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.194 1.194 26 H -0.197 1.197 27 H -0.198 1.198 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.147 0.853 36 H 0.187 0.813 37 H 0.191 0.809 38 H 0.165 0.835 39 H 0.119 0.881 40 H 0.065 0.935 41 H 0.228 0.772 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.758 -4.730 20.156 20.886 hybrid contribution 1.935 2.136 -0.198 2.889 sum 4.693 -2.594 19.958 20.666 Atomic orbital electron populations 1.21699 0.92231 1.03038 1.02023 1.22055 0.97556 0.95877 0.89174 0.94901 1.21938 0.76987 1.03791 0.97573 1.47818 1.07678 1.15866 1.62845 1.22364 0.99184 0.88067 0.99410 1.17097 0.85040 0.83031 0.77154 1.90824 1.73483 1.30408 1.49039 1.24465 0.97053 1.04006 1.15907 1.20610 0.90404 0.99036 0.96100 1.20452 0.99029 0.97469 1.04825 1.23364 0.88166 1.00578 1.08028 1.91507 1.39327 1.85942 1.92004 1.84254 0.89349 1.18115 1.52975 1.60363 1.35963 1.30128 1.03898 1.21563 1.01658 0.93692 0.90051 1.20677 0.83264 0.88065 0.85203 1.90465 1.57257 1.17058 1.85315 1.41958 1.58427 1.11759 1.08897 1.19731 1.42123 0.95281 0.88925 0.89907 1.26064 0.97239 0.96539 1.01491 1.69688 1.48972 1.09095 1.28574 0.84861 0.78065 0.78172 0.77197 1.19442 1.19698 1.19759 0.93337 0.91195 0.90466 0.88509 0.86410 0.91891 0.89576 0.85269 0.81262 0.80912 0.83456 0.88091 0.93452 0.77227 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.44 71.98 0.68 -2.02 16 2 C 0.06 1.56 2.90 44.92 0.13 1.69 16 3 H 0.03 0.94 7.77 -2.39 -0.02 0.92 16 4 C 0.12 2.29 5.06 86.38 0.44 2.72 16 5 N -0.61 -12.76 2.49 -851.86 -2.12 -14.88 16 6 C 0.05 0.92 7.85 127.77 1.00 1.93 16 7 C 0.59 14.81 7.58 86.35 0.65 15.47 16 8 O -0.56 -17.18 16.54 -4.48 -0.07 -17.26 16 9 C -0.29 -6.46 6.25 24.03 0.15 -6.31 16 10 C -0.03 -0.56 10.01 21.71 0.22 -0.34 16 11 C -0.19 -3.37 10.16 21.14 0.21 -3.15 16 12 C -0.06 -1.31 8.10 66.90 0.54 -0.77 16 13 F -0.11 -2.38 17.32 44.97 0.78 -1.60 16 14 S 0.29 5.36 17.88 -56.49 -1.01 4.35 16 15 N -0.67 -20.71 5.94 -495.58 -2.94 -23.66 16 16 C 0.06 2.28 5.96 85.56 0.51 2.79 16 17 C 0.44 20.94 7.82 87.66 0.69 21.63 16 18 O -0.61 -32.84 15.78 -3.06 -0.05 -32.89 16 19 N -0.57 -29.63 5.29 -306.99 -1.62 -31.26 16 20 C -0.33 -18.70 9.68 84.04 0.81 -17.89 16 21 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.14 13.05 21.66 0.28 -49.85 16 24 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H 0.05 1.10 7.59 -2.39 -0.02 1.09 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.80 7.63 -2.39 -0.02 1.78 16 32 H 0.12 1.69 7.77 -2.39 -0.02 1.67 16 33 H 0.06 1.33 6.51 -2.39 -0.02 1.32 16 34 H 0.09 1.22 4.41 -21.55 -0.09 1.12 16 35 H 0.13 1.55 7.77 -2.39 -0.02 1.53 16 36 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.34 10.73 4.65 -89.69 -0.42 10.31 16 39 H 0.10 3.37 7.58 -2.39 -0.02 3.35 16 40 H 0.05 1.66 8.05 -2.39 -0.02 1.64 16 41 H 0.39 19.69 7.90 -92.71 -0.73 18.95 16 42 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -70.67 366.98 1.63 -69.04 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -0.15 Total: 37.79 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 6.51 Total: 15.47 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -6.40 Total: -119.65 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.12 Total: -50.15 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.60 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.01 Total: 4.35 kcal Total: -70.67 1.63 -69.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755620366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.073 kcal (2) G-P(sol) polarization free energy of solvation -70.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds