Wall clock time and date at job start Wed Apr 1 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00049 * 2 1 4 4 H 1.48495 * 109.47410 * 240.00110 * 3 2 1 5 5 H 1.48501 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46944 * 120.00278 * 3 2 1 7 7 C 1.39949 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99718 * 163.65544 * 7 2 1 9 9 C 1.41397 * 119.99908 * 343.66030 * 7 2 1 10 10 C 1.40732 * 120.24096 * 334.04907 * 9 7 2 11 11 C 1.37597 * 119.74223 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.24982 * 359.97438 * 11 10 9 13 13 C 1.38613 * 120.49861 * 0.28299 * 12 11 10 14 14 C 1.37637 * 120.24849 * 359.43628 * 13 12 11 15 15 C 1.50706 * 120.12896 * 180.29687 * 14 13 12 16 16 C 1.50695 * 109.47260 * 265.26052 * 15 14 13 17 17 O 1.21279 * 120.00233 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99970 * 179.97438 * 16 15 14 19 19 C 1.46829 * 120.07582 * 359.72999 * 18 16 15 20 20 C 1.53318 * 109.27382 * 236.30118 * 19 18 16 21 21 N 1.46565 * 107.39089 * 314.59091 * 20 19 18 22 22 C 1.33541 * 129.52676 * 234.20006 * 21 20 19 23 23 O 1.21533 * 123.97812 * 350.27666 * 22 21 20 24 24 N 1.34129 * 112.04192 * 170.24095 * 22 21 20 25 25 C 1.37214 * 111.92828 * 3.72552 * 24 22 21 26 26 O 1.21236 * 128.29753 * 181.81704 * 25 24 22 27 27 C 1.47923 * 123.45549 * 51.31640 * 21 20 19 28 28 H 1.08997 * 111.74623 * 69.40177 * 27 21 20 29 29 C 1.47107 * 120.07551 * 179.97438 * 18 16 15 30 30 H 0.97002 * 119.99741 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.13261 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.87709 * 180.02562 * 11 10 9 33 33 H 1.08004 * 119.75408 * 179.97438 * 12 11 10 34 34 H 1.08000 * 119.87435 * 179.69636 * 13 12 11 35 35 H 1.09007 * 109.46697 * 25.26162 * 15 14 13 36 36 H 1.09000 * 109.46782 * 145.25168 * 15 14 13 37 37 H 1.09000 * 109.54288 * 356.19794 * 19 18 16 38 38 H 1.08996 * 109.55144 * 116.48075 * 19 18 16 39 39 H 1.09000 * 109.97587 * 195.05082 * 20 19 18 40 40 H 1.09006 * 109.80221 * 74.03120 * 20 19 18 41 41 H 0.97004 * 124.17325 * 183.11829 * 24 22 21 42 42 H 1.09007 * 109.74794 * 241.99037 * 29 18 16 43 43 H 1.08997 * 109.74977 * 2.66833 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0552 -1.2307 -0.2638 9 6 1.3438 -2.4119 0.3434 10 6 0.2129 -2.3812 1.1805 11 6 -0.4259 -3.5551 1.5082 12 6 0.0404 -4.7648 1.0167 13 6 1.1565 -4.8074 0.1958 14 6 1.8078 -3.6452 -0.1498 15 6 3.0170 -3.6940 -1.0479 16 6 4.2667 -3.7252 -0.2064 17 8 4.1838 -3.7090 1.0035 18 7 5.4767 -3.7713 -0.7983 19 6 5.5789 -3.7970 -2.2628 20 6 6.3781 -5.0328 -2.6927 21 7 7.5561 -5.1164 -1.8247 22 6 8.8486 -5.1955 -2.1512 23 8 9.2533 -5.3807 -3.2821 24 7 9.6475 -5.0457 -1.0842 25 6 8.9309 -4.9317 0.0804 26 8 9.3481 -4.7566 1.2051 27 6 7.4864 -5.0643 -0.3480 28 1 7.0247 -5.9606 0.0663 29 6 6.6978 -3.8013 0.0215 30 1 -0.4850 0.8401 0.0004 31 1 -0.1528 -1.4400 1.5634 32 1 -1.2942 -3.5340 2.1500 33 1 -0.4669 -5.6814 1.2794 34 1 1.5139 -5.7558 -0.1774 35 1 2.9735 -4.5899 -1.6673 36 1 3.0310 -2.8109 -1.6867 37 1 4.5803 -3.8415 -2.6973 38 1 6.0890 -2.8981 -2.6087 39 1 6.6901 -4.9315 -3.7322 40 1 5.7666 -5.9275 -2.5748 41 1 10.6164 -5.0292 -1.1271 42 1 7.3011 -2.9169 -0.1837 43 1 6.4315 -3.8282 1.0781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777523607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:59 Heat of formation + Delta-G solvation = -41.789289 kcal Electronic energy + Delta-G solvation = -30050.298334 eV Core-core repulsion = 25868.429297 eV Total energy + Delta-G solvation = -4181.869037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.63928 -39.75573 -38.98345 -37.70775 -36.90564 -35.79836 -33.67871 -33.65653 -32.40057 -31.37049 -29.49914 -28.38876 -26.98967 -25.35427 -24.67710 -23.85781 -21.86703 -21.60276 -20.96980 -20.04866 -18.59274 -18.45886 -17.60618 -17.19442 -16.76140 -16.48866 -16.08052 -15.96095 -15.65219 -15.41389 -15.14500 -14.61861 -14.54050 -14.32331 -13.95546 -13.85519 -13.58544 -13.14850 -12.88974 -12.63246 -12.58932 -11.96616 -11.85373 -11.66763 -11.60249 -11.27806 -11.24442 -11.12231 -11.01541 -10.73320 -10.68759 -10.57309 -10.44242 -9.69872 -9.52969 -9.41827 -9.34331 -9.18956 -8.59237 -7.35567 -7.33646 -6.77294 -4.38774 1.21418 1.81688 2.58407 2.63992 2.72786 2.86648 3.03925 3.06580 3.07247 3.13533 3.24947 3.76737 3.90335 4.11550 4.33409 4.62085 4.62806 4.73392 4.83502 5.01372 5.20047 5.29357 5.36822 5.53953 5.63391 5.69480 5.70244 5.89673 5.97596 6.03019 6.22482 6.33928 6.40726 6.47397 6.67412 6.74748 6.96565 7.04644 7.25363 7.38211 7.44589 7.62064 7.78323 7.88083 8.02090 8.09617 8.27089 8.56013 8.62291 8.87334 8.97471 10.16805 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.003276 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.668888 B = 8545.575620 C = 9379.789710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.073 0.927 9 C 0.130 3.870 10 C -0.159 4.159 11 C -0.106 4.106 12 C -0.239 4.239 13 C -0.079 4.079 14 C -0.186 4.186 15 C -0.068 4.068 16 C 0.519 3.481 17 O -0.509 6.509 18 N -0.627 5.627 19 C 0.090 3.910 20 C 0.135 3.865 21 N -0.616 5.616 22 C 0.710 3.290 23 O -0.547 6.547 24 N -0.691 5.691 25 C 0.538 3.462 26 O -0.452 6.452 27 C 0.070 3.930 28 H 0.138 0.862 29 C 0.120 3.880 30 H 0.281 0.719 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.430 0.570 42 H 0.075 0.925 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.599 -6.865 -6.039 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.091 0.909 9 C 0.128 3.872 10 C -0.178 4.178 11 C -0.124 4.124 12 C -0.259 4.259 13 C -0.098 4.098 14 C -0.188 4.188 15 C -0.107 4.107 16 C 0.309 3.691 17 O -0.381 6.381 18 N -0.364 5.364 19 C -0.034 4.034 20 C 0.013 3.987 21 N -0.355 5.355 22 C 0.411 3.589 23 O -0.422 6.422 24 N -0.363 5.363 25 C 0.323 3.677 26 O -0.319 6.319 27 C -0.038 4.038 28 H 0.155 0.845 29 C -0.005 4.005 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.272 0.728 42 H 0.093 0.907 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.525 -6.685 -5.458 15.211 hybrid contribution 0.923 0.745 -0.049 1.187 sum 13.448 -5.940 -5.507 15.699 Atomic orbital electron populations 1.69805 1.07469 1.29241 1.35406 1.25865 0.94684 1.01102 0.92302 0.86461 0.80248 0.80630 0.79953 1.19101 1.20303 1.18880 1.19422 0.97091 0.91001 1.41206 0.90907 1.17316 0.90755 0.91228 0.87895 1.21302 0.98996 0.96687 1.00818 1.20687 0.98630 0.93476 0.99650 1.20308 1.01475 0.96177 1.07915 1.20281 0.95880 0.95447 0.98167 1.19023 0.99453 0.94073 1.06250 1.20305 0.90181 1.02755 0.97485 1.21484 0.83896 0.74299 0.89445 1.90702 1.85910 1.46787 1.14663 1.48186 1.05554 1.76675 1.05984 1.22149 1.02631 0.97731 0.80905 1.22016 0.83251 0.99288 0.94134 1.47526 1.05576 1.75855 1.06545 1.15500 0.81560 0.77851 0.84005 1.91027 1.77470 1.54575 1.19106 1.44985 1.12015 1.70541 1.08742 1.21073 0.88688 0.73968 0.83964 1.90878 1.77939 1.43784 1.19303 1.22870 0.94762 1.03892 0.82308 0.84476 1.21590 0.85949 0.93691 0.99224 0.90846 0.86547 0.89574 0.89660 0.89793 0.90395 0.88331 0.86996 0.90548 0.87289 0.89659 0.72756 0.90655 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.89 10.97 55.55 0.61 -19.28 16 2 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 3 Si 0.90 18.32 29.59 -169.99 -5.03 13.29 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 7 C -0.46 -11.50 8.14 -37.74 -0.31 -11.81 16 8 H 0.07 1.77 6.68 -52.49 -0.35 1.42 16 9 C 0.13 3.33 5.56 -106.83 -0.59 2.74 16 10 C -0.16 -4.11 8.68 -38.87 -0.34 -4.45 16 11 C -0.11 -2.50 10.02 -39.66 -0.40 -2.90 16 12 C -0.24 -5.35 10.05 -39.29 -0.39 -5.74 16 13 C -0.08 -1.73 9.66 -39.66 -0.38 -2.11 16 14 C -0.19 -4.18 4.43 -103.91 -0.46 -4.64 16 15 C -0.07 -1.17 3.50 -29.03 -0.10 -1.27 16 16 C 0.52 8.91 7.31 -10.99 -0.08 8.83 16 17 O -0.51 -11.05 15.39 5.56 0.09 -10.97 16 18 N -0.63 -7.85 2.92 -172.49 -0.50 -8.35 16 19 C 0.09 0.79 6.47 -3.70 -0.02 0.77 16 20 C 0.13 1.01 7.15 -3.84 -0.03 0.98 16 21 N -0.62 -5.59 3.00 -171.83 -0.52 -6.11 16 22 C 0.71 7.30 8.73 -88.60 -0.77 6.53 16 23 O -0.55 -7.30 17.79 5.34 0.09 -7.20 16 24 N -0.69 -5.80 5.80 -15.49 -0.09 -5.89 16 25 C 0.54 5.17 8.22 -9.60 -0.08 5.09 16 26 O -0.45 -5.56 18.02 5.60 0.10 -5.46 16 27 C 0.07 0.65 4.06 -67.81 -0.28 0.38 16 28 H 0.14 1.16 8.14 -51.93 -0.42 0.73 16 29 C 0.12 1.37 6.03 -3.49 -0.02 1.35 16 30 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 31 H 0.12 3.11 6.22 -52.49 -0.33 2.79 16 32 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 33 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.08 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.08 1.07 7.62 -51.93 -0.40 0.67 16 36 H 0.10 1.68 6.80 -51.93 -0.35 1.33 16 37 H 0.11 0.87 5.81 -51.93 -0.30 0.57 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.11 0.71 7.98 -51.93 -0.41 0.30 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.43 2.72 8.96 -40.82 -0.37 2.35 16 42 H 0.08 0.81 8.04 -51.93 -0.42 0.40 16 43 H 0.12 1.59 6.95 -51.93 -0.36 1.23 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -32.83 359.92 -9.13 -41.96 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.96 Total: 7.04 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -4.35 Total: -4.45 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: -0.50 Total: -39.63 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.28 Total: -23.63 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.83 -9.13 -41.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777523607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.169 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds