Wall clock time and date at job start Wed Apr 1 2020 02:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00049 * 2 1 4 4 H 1.48495 * 109.47410 * 240.00110 * 3 2 1 5 5 H 1.48501 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46944 * 120.00278 * 3 2 1 7 7 C 1.39949 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99718 * 163.65544 * 7 2 1 9 9 C 1.41397 * 119.99908 * 343.66030 * 7 2 1 10 10 C 1.40732 * 120.24096 * 334.04907 * 9 7 2 11 11 C 1.37597 * 119.74223 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.24982 * 359.97438 * 11 10 9 13 13 C 1.38613 * 120.49861 * 0.28299 * 12 11 10 14 14 C 1.37637 * 120.24849 * 359.43628 * 13 12 11 15 15 C 1.50706 * 120.12896 * 180.29687 * 14 13 12 16 16 C 1.50695 * 109.47260 * 265.26052 * 15 14 13 17 17 O 1.21279 * 120.00233 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99970 * 179.97438 * 16 15 14 19 19 C 1.46829 * 120.07582 * 359.72999 * 18 16 15 20 20 C 1.53318 * 109.27382 * 236.30118 * 19 18 16 21 21 N 1.46565 * 107.39089 * 314.59091 * 20 19 18 22 22 C 1.33541 * 129.52676 * 234.20006 * 21 20 19 23 23 O 1.21533 * 123.97812 * 350.27666 * 22 21 20 24 24 N 1.34129 * 112.04192 * 170.24095 * 22 21 20 25 25 C 1.37214 * 111.92828 * 3.72552 * 24 22 21 26 26 O 1.21236 * 128.29753 * 181.81704 * 25 24 22 27 27 C 1.47923 * 123.45549 * 51.31640 * 21 20 19 28 28 H 1.08997 * 111.74623 * 69.40177 * 27 21 20 29 29 C 1.47107 * 120.07551 * 179.97438 * 18 16 15 30 30 H 0.97002 * 119.99741 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.13261 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.87709 * 180.02562 * 11 10 9 33 33 H 1.08004 * 119.75408 * 179.97438 * 12 11 10 34 34 H 1.08000 * 119.87435 * 179.69636 * 13 12 11 35 35 H 1.09007 * 109.46697 * 25.26162 * 15 14 13 36 36 H 1.09000 * 109.46782 * 145.25168 * 15 14 13 37 37 H 1.09000 * 109.54288 * 356.19794 * 19 18 16 38 38 H 1.08996 * 109.55144 * 116.48075 * 19 18 16 39 39 H 1.09000 * 109.97587 * 195.05082 * 20 19 18 40 40 H 1.09006 * 109.80221 * 74.03120 * 20 19 18 41 41 H 0.97004 * 124.17325 * 183.11829 * 24 22 21 42 42 H 1.09007 * 109.74794 * 241.99037 * 29 18 16 43 43 H 1.08997 * 109.74977 * 2.66833 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0552 -1.2307 -0.2638 9 6 1.3438 -2.4119 0.3434 10 6 0.2129 -2.3812 1.1805 11 6 -0.4259 -3.5551 1.5082 12 6 0.0404 -4.7648 1.0167 13 6 1.1565 -4.8074 0.1958 14 6 1.8078 -3.6452 -0.1498 15 6 3.0170 -3.6940 -1.0479 16 6 4.2667 -3.7252 -0.2064 17 8 4.1838 -3.7090 1.0035 18 7 5.4767 -3.7713 -0.7983 19 6 5.5789 -3.7970 -2.2628 20 6 6.3781 -5.0328 -2.6927 21 7 7.5561 -5.1164 -1.8247 22 6 8.8486 -5.1955 -2.1512 23 8 9.2533 -5.3807 -3.2821 24 7 9.6475 -5.0457 -1.0842 25 6 8.9309 -4.9317 0.0804 26 8 9.3481 -4.7566 1.2051 27 6 7.4864 -5.0643 -0.3480 28 1 7.0247 -5.9606 0.0663 29 6 6.6978 -3.8013 0.0215 30 1 -0.4850 0.8401 0.0004 31 1 -0.1528 -1.4400 1.5634 32 1 -1.2942 -3.5340 2.1500 33 1 -0.4669 -5.6814 1.2794 34 1 1.5139 -5.7558 -0.1774 35 1 2.9735 -4.5899 -1.6673 36 1 3.0310 -2.8109 -1.6867 37 1 4.5803 -3.8415 -2.6973 38 1 6.0890 -2.8981 -2.6087 39 1 6.6901 -4.9315 -3.7322 40 1 5.7666 -5.9275 -2.5748 41 1 10.6164 -5.0292 -1.1271 42 1 7.3011 -2.9169 -0.1837 43 1 6.4315 -3.8282 1.0781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777523607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:58 Heat of formation + Delta-G solvation = -63.990548 kcal Electronic energy + Delta-G solvation = -30051.261052 eV Core-core repulsion = 25868.429297 eV Total energy + Delta-G solvation = -4182.831756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.45010 -41.00022 -39.85712 -39.25252 -38.06774 -36.72505 -35.46441 -34.61805 -33.63345 -32.52802 -31.30055 -29.45693 -28.31701 -26.94757 -25.79378 -24.73451 -22.84196 -22.70857 -22.46175 -21.53840 -19.78063 -19.26402 -18.99610 -18.47214 -17.84821 -17.39668 -17.31135 -16.92614 -16.86340 -16.50407 -16.16062 -16.13792 -15.68705 -15.39677 -15.18925 -15.18270 -14.81073 -14.40819 -14.30186 -14.06811 -13.61915 -13.35810 -13.29214 -12.90276 -12.75696 -12.68946 -12.63423 -12.58551 -12.43182 -12.10530 -12.08492 -11.51330 -11.46625 -11.27906 -11.15881 -11.00035 -10.74811 -10.55058 -9.56527 -9.18343 -9.11940 -8.56678 -6.26019 0.39333 1.00123 1.08607 1.19031 1.37822 1.46868 1.56252 1.74425 1.83985 1.85133 2.01758 2.21004 2.81769 2.95886 3.27644 3.56776 3.72879 3.88627 4.00779 4.04573 4.17995 4.31919 4.44039 4.48777 4.57454 4.61374 4.68119 4.72562 4.76577 4.84815 4.94149 5.05200 5.11188 5.23157 5.28846 5.40553 5.43017 5.59138 5.81284 5.89614 6.07009 6.19285 6.19804 6.26074 6.35679 6.45516 6.77859 7.00866 7.02574 7.15823 7.31252 8.39389 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.003276 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.668888 B = 8545.575620 C = 9379.789710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.039 3.961 3 Si 0.966 3.034 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.481 4.481 8 H 0.073 0.927 9 C 0.097 3.903 10 C -0.196 4.196 11 C -0.119 4.119 12 C -0.243 4.243 13 C -0.088 4.088 14 C -0.187 4.187 15 C -0.066 4.066 16 C 0.522 3.478 17 O -0.565 6.565 18 N -0.616 5.616 19 C 0.085 3.915 20 C 0.136 3.864 21 N -0.611 5.611 22 C 0.713 3.287 23 O -0.575 6.575 24 N -0.679 5.679 25 C 0.548 3.452 26 O -0.479 6.479 27 C 0.081 3.919 28 H 0.152 0.848 29 C 0.119 3.881 30 H 0.285 0.715 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.441 0.559 42 H 0.082 0.918 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.982 -8.099 -7.959 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.511 4.511 8 H 0.091 0.909 9 C 0.095 3.905 10 C -0.215 4.215 11 C -0.137 4.137 12 C -0.262 4.262 13 C -0.106 4.106 14 C -0.189 4.189 15 C -0.105 4.105 16 C 0.313 3.687 17 O -0.442 6.442 18 N -0.351 5.351 19 C -0.038 4.038 20 C 0.016 3.984 21 N -0.349 5.349 22 C 0.414 3.586 23 O -0.452 6.452 24 N -0.350 5.350 25 C 0.334 3.666 26 O -0.348 6.348 27 C -0.028 4.028 28 H 0.169 0.831 29 C -0.005 4.005 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.119 0.881 37 H 0.145 0.855 38 H 0.103 0.897 39 H 0.143 0.857 40 H 0.121 0.879 41 H 0.284 0.716 42 H 0.101 0.899 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.936 -7.933 -7.437 17.676 hybrid contribution 0.499 1.013 0.530 1.248 sum 14.435 -6.919 -6.907 17.434 Atomic orbital electron populations 1.69877 1.08797 1.30160 1.36479 1.26607 0.95325 1.04013 0.91652 0.85487 0.79004 0.76817 0.79873 1.17529 1.19473 1.19834 1.19587 0.97157 0.91827 1.42525 0.90852 1.17713 0.91225 0.92945 0.88610 1.21304 1.00770 0.96672 1.02790 1.20937 0.99159 0.93567 1.00065 1.20721 1.01693 0.96552 1.07271 1.20745 0.95424 0.96799 0.97641 1.19551 1.00567 0.93194 1.05545 1.20334 0.88347 1.04969 0.96896 1.21318 0.85082 0.73810 0.88523 1.90690 1.86866 1.49799 1.16867 1.48076 1.04471 1.74848 1.07707 1.22451 1.04075 0.99037 0.78240 1.22190 0.82538 0.99198 0.94520 1.47641 1.05685 1.75193 1.06401 1.15514 0.81871 0.77498 0.83696 1.91019 1.77938 1.55989 1.20242 1.44843 1.12578 1.69682 1.07931 1.20976 0.88819 0.73191 0.83630 1.90879 1.78374 1.45110 1.20403 1.22752 0.94214 1.03271 0.82548 0.83093 1.21573 0.85687 0.95205 0.98038 0.90476 0.88859 0.88111 0.86886 0.86127 0.86024 0.88103 0.85460 0.89651 0.85741 0.87863 0.71563 0.89944 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.89 10.97 21.83 0.24 -42.65 16 2 C 0.04 1.91 5.16 85.26 0.44 2.35 16 3 Si 0.97 38.02 29.59 68.60 2.03 40.05 16 4 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.48 -24.77 8.14 23.46 0.19 -24.58 16 8 H 0.07 3.62 6.68 -2.91 -0.02 3.60 16 9 C 0.10 5.08 5.56 -21.29 -0.12 4.96 16 10 C -0.20 -10.55 8.68 22.73 0.20 -10.36 16 11 C -0.12 -5.71 10.02 22.22 0.22 -5.48 16 12 C -0.24 -10.56 10.05 22.46 0.23 -10.33 16 13 C -0.09 -3.65 9.66 22.22 0.21 -3.44 16 14 C -0.19 -8.24 4.43 -19.41 -0.09 -8.33 16 15 C -0.07 -2.15 3.50 29.10 0.10 -2.05 16 16 C 0.52 17.21 7.31 87.66 0.64 17.86 16 17 O -0.57 -24.70 15.39 -3.02 -0.05 -24.75 16 18 N -0.62 -14.07 2.92 -818.01 -2.39 -16.46 16 19 C 0.08 1.19 6.47 86.42 0.56 1.75 16 20 C 0.14 1.49 7.15 86.47 0.62 2.11 16 21 N -0.61 -9.20 3.00 -816.52 -2.45 -11.66 16 22 C 0.71 12.83 8.73 179.64 1.57 14.40 16 23 O -0.58 -13.97 17.79 -3.82 -0.07 -14.03 16 24 N -0.68 -9.97 5.80 -438.56 -2.54 -12.52 16 25 C 0.55 9.60 8.22 87.44 0.72 10.32 16 26 O -0.48 -11.31 18.02 -2.89 -0.05 -11.37 16 27 C 0.08 1.32 4.06 44.29 0.18 1.50 16 28 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 29 C 0.12 2.57 6.03 86.40 0.52 3.09 16 30 H 0.28 13.53 8.30 -92.71 -0.77 12.76 16 31 H 0.09 5.32 6.22 -2.91 -0.02 5.30 16 32 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 34 H 0.12 4.05 8.06 -2.91 -0.02 4.02 16 35 H 0.12 2.81 7.62 -2.38 -0.02 2.79 16 36 H 0.10 3.25 6.80 -2.39 -0.02 3.23 16 37 H 0.13 1.45 5.81 -2.39 -0.01 1.44 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.12 1.10 7.98 -2.39 -0.02 1.08 16 40 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.44 4.73 8.96 -92.71 -0.83 3.89 16 42 H 0.08 1.66 8.04 -2.38 -0.02 1.64 16 43 H 0.10 2.60 6.95 -2.39 -0.02 2.58 16 Total: -1.00 -74.15 359.92 1.17 -72.98 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.25 Total: 26.63 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 6.20 Total: -6.23 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -7.14 Total: -83.28 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -0.17 Total: -50.15 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -74.15 1.17 -72.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777523607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.987 kcal (2) G-P(sol) polarization free energy of solvation -74.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds