Wall clock time and date at job start Wed Apr 1 2020 03:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86806 * 120.00022 * 2 1 4 4 H 1.48498 * 109.47037 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46810 * 299.99786 * 3 2 1 6 6 H 1.48502 * 109.46920 * 60.00002 * 3 2 1 7 7 C 1.38886 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00461 * 174.61241 * 7 2 1 9 9 N 1.37213 * 120.00282 * 354.61816 * 7 2 1 10 10 C 1.34772 * 120.00539 * 184.44767 * 9 7 2 11 11 O 1.21271 * 120.00182 * 174.25621 * 10 9 7 12 12 C 1.50698 * 119.99810 * 354.25417 * 10 9 7 13 13 H 1.09000 * 110.78826 * 61.79937 * 12 10 9 14 14 C 1.54600 * 110.72591 * 298.54911 * 12 10 9 15 15 C 1.53996 * 105.22489 * 219.73285 * 14 12 10 16 16 N 1.47896 * 107.05888 * 358.72405 * 15 14 12 17 17 C 1.46907 * 110.99923 * 145.84228 * 16 15 14 18 18 C 1.53005 * 109.46830 * 69.87426 * 17 16 15 19 19 F 1.39893 * 109.47287 * 60.00009 * 18 17 16 20 20 F 1.39903 * 109.46763 * 179.97438 * 18 17 16 21 21 F 1.39897 * 109.47281 * 299.99799 * 18 17 16 22 22 C 1.48530 * 105.82252 * 25.33182 * 16 15 14 23 23 C 1.39435 * 119.99681 * 4.44141 * 9 7 2 24 24 C 1.39058 * 119.69645 * 274.40132 * 23 9 7 25 25 C 1.38382 * 119.09624 * 179.73059 * 24 23 9 26 26 C 1.38833 * 118.49208 * 0.53139 * 25 24 23 27 27 C 1.38146 * 119.30842 * 359.73013 * 26 25 24 28 28 N 1.31877 * 120.85312 * 0.02562 * 27 26 25 29 29 H 0.97007 * 119.99457 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.31021 * 100.76947 * 14 12 10 31 31 H 1.09002 * 110.30660 * 338.69648 * 14 12 10 32 32 H 1.09008 * 109.91390 * 118.07822 * 15 14 12 33 33 H 1.09003 * 109.91733 * 239.17158 * 15 14 12 34 34 H 1.08997 * 109.47194 * 189.87414 * 17 16 15 35 35 H 1.08996 * 109.47126 * 309.87910 * 17 16 15 36 36 H 1.09002 * 110.67131 * 79.22710 * 22 16 15 37 37 H 1.09001 * 110.67074 * 202.19347 * 22 16 15 38 38 H 1.07995 * 120.45536 * 359.97438 * 24 23 9 39 39 H 1.07997 * 120.75692 * 180.26717 * 25 24 23 40 40 H 1.07993 * 120.34452 * 179.70479 * 26 25 24 41 41 H 1.08003 * 119.57223 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0085 -1.2028 0.0005 8 1 3.0849 -1.2050 -0.0873 9 7 1.3270 -2.3884 0.1125 10 6 2.0052 -3.5496 0.2033 11 8 1.4088 -4.5858 0.4067 12 6 3.5045 -3.5603 0.0521 13 1 3.9764 -2.9641 0.8331 14 6 3.9167 -3.0520 -1.3486 15 6 5.0848 -3.9580 -1.7800 16 7 5.3354 -4.9014 -0.6689 17 6 5.7661 -6.2108 -1.1770 18 6 7.1729 -6.0915 -1.7666 19 9 8.0598 -5.6619 -0.7737 20 9 7.5832 -7.3386 -2.2499 21 9 7.1622 -5.1651 -2.8148 22 6 4.0495 -5.0124 0.0660 23 6 -0.0672 -2.3920 0.1325 24 6 -0.7394 -2.1978 1.3342 25 6 -2.1232 -2.1980 1.3388 26 6 -2.7895 -2.4044 0.1384 27 6 -2.0572 -2.5963 -1.0171 28 7 -0.7387 -2.5860 -0.9918 29 1 -0.4850 0.8401 -0.0004 30 1 4.2439 -2.0137 -1.2930 31 1 3.0849 -3.1491 -2.0462 32 1 4.8143 -4.5088 -2.6810 33 1 5.9734 -3.3549 -1.9665 34 1 5.7744 -6.9326 -0.3603 35 1 5.0751 -6.5454 -1.9507 36 1 3.3658 -5.6835 -0.4540 37 1 4.2182 -5.3532 1.0875 38 1 -0.1891 -2.0449 2.2508 39 1 -2.6725 -2.0454 2.2561 40 1 -3.8689 -2.4152 0.1084 41 1 -2.5711 -2.7568 -1.9534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892470310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:01 Heat of formation + Delta-G solvation = -122.795715 kcal Electronic energy + Delta-G solvation = -30755.333266 eV Core-core repulsion = 26028.094786 eV Total energy + Delta-G solvation = -4727.238480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.10337 -47.66837 -47.52933 -40.01043 -38.88854 -37.40307 -34.99876 -32.85544 -31.81134 -31.24633 -29.51949 -28.73918 -27.88772 -25.17055 -23.62528 -22.80579 -22.43865 -21.13798 -20.98164 -19.22087 -18.57980 -18.47220 -18.10765 -17.27620 -16.53071 -15.88719 -15.59597 -15.21762 -15.12096 -14.84717 -14.51998 -14.46338 -14.13375 -14.04955 -13.87974 -13.73813 -13.71384 -13.55155 -13.49642 -12.90691 -12.77388 -12.54340 -12.39471 -12.19668 -11.81490 -11.53417 -11.49036 -11.29838 -11.14841 -11.06701 -10.83912 -10.53334 -10.44182 -10.25631 -9.84756 -8.85246 -8.74995 -8.61974 -8.53563 -8.10262 -7.88308 -6.33554 -4.13399 2.28779 2.43543 2.66594 3.01390 3.12494 3.15663 3.48093 3.59050 3.79101 3.90422 3.99828 4.32938 4.44238 4.79356 4.89776 4.96592 4.97598 5.09152 5.24114 5.32026 5.51882 5.64854 5.68403 5.77619 5.82340 5.96031 6.02058 6.11799 6.19699 6.26464 6.42688 6.45693 6.48707 6.70849 6.75876 6.82373 7.10390 7.12531 7.24368 7.37811 7.76087 8.25432 8.86462 9.16037 9.23424 9.62114 10.50863 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.015154 B = 0.003304 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.214071 B = 8471.801163 C = 9660.178805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.035 3.965 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.336 4.336 8 H 0.115 0.885 9 N -0.408 5.408 10 C 0.483 3.517 11 O -0.593 6.593 12 C -0.087 4.087 13 H 0.104 0.896 14 C -0.112 4.112 15 C 0.028 3.972 16 N -0.514 5.514 17 C 0.001 3.999 18 C 0.458 3.542 19 F -0.174 7.174 20 F -0.188 7.188 21 F -0.183 7.183 22 C 0.061 3.939 23 C 0.465 3.535 24 C -0.126 4.126 25 C -0.079 4.079 26 C -0.207 4.207 27 C 0.109 3.891 28 N -0.494 5.494 29 H 0.274 0.726 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.669 -6.401 -1.084 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.170 4.170 3 Si 0.757 3.243 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.462 4.462 8 H 0.133 0.867 9 N -0.126 5.126 10 C 0.272 3.728 11 O -0.477 6.477 12 C -0.109 4.109 13 H 0.122 0.878 14 C -0.150 4.150 15 C -0.099 4.099 16 N -0.239 5.239 17 C -0.130 4.130 18 C 0.403 3.597 19 F -0.156 7.156 20 F -0.169 7.169 21 F -0.164 7.164 22 C -0.066 4.066 23 C 0.239 3.761 24 C -0.148 4.148 25 C -0.105 4.105 26 C -0.228 4.228 27 C -0.048 4.048 28 N -0.206 5.206 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.142 -6.660 -1.442 9.871 hybrid contribution -0.594 1.104 0.018 1.254 sum 6.548 -5.557 -1.424 8.705 Atomic orbital electron populations 1.69575 1.05721 1.27459 1.47285 1.25280 0.95676 0.99969 0.96117 0.85780 0.79473 0.81038 0.77997 1.19027 1.20630 1.20518 1.19963 0.92907 0.81449 1.51846 0.86734 1.41227 1.01725 1.06519 1.63098 1.19784 0.88775 0.82676 0.81586 1.90579 1.70447 1.32180 1.54503 1.21833 0.93427 0.96241 0.99430 0.87763 1.22384 0.97021 0.99972 0.95653 1.23193 0.99524 0.95052 0.92156 1.64737 1.31072 1.05967 1.22108 1.23379 0.91075 0.96035 1.02483 1.20483 0.89733 0.73196 0.76261 1.93195 1.71384 1.89810 1.61202 1.93173 1.92076 1.42846 1.88848 1.93178 1.96952 1.66747 1.59562 1.23067 0.87306 0.97053 0.99199 1.17373 0.84113 0.86912 0.87745 1.21528 0.94254 1.00641 0.98400 1.21042 0.93908 0.98152 0.97414 1.21643 0.99653 1.07072 0.94383 1.22052 0.89239 0.96595 0.96961 1.67111 1.09075 1.14444 1.29980 0.91421 0.89553 0.90550 0.93233 0.89624 0.86294 0.89984 0.91815 0.89260 0.86931 0.86736 0.86795 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.78 9.59 55.49 0.53 -21.25 16 2 C 0.03 0.83 5.44 -17.49 -0.10 0.73 16 3 Si 0.93 18.78 29.56 -169.99 -5.02 13.75 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.34 -7.92 8.82 -14.90 -0.13 -8.06 16 8 H 0.12 2.47 4.77 -52.49 -0.25 2.22 16 9 N -0.41 -9.93 2.74 -60.71 -0.17 -10.10 16 10 C 0.48 10.96 6.85 -10.99 -0.08 10.89 16 11 O -0.59 -14.88 15.77 5.56 0.09 -14.79 16 12 C -0.09 -1.56 2.48 -89.82 -0.22 -1.78 16 13 H 0.10 1.80 7.88 -51.93 -0.41 1.39 16 14 C -0.11 -1.84 5.31 -25.37 -0.13 -1.97 16 15 C 0.03 0.39 5.10 -2.76 -0.01 0.38 16 16 N -0.51 -6.96 5.19 -230.34 -1.20 -8.15 16 17 C 0.00 0.01 4.88 -3.82 -0.02 -0.01 16 18 C 0.46 5.27 3.27 37.16 0.12 5.39 16 19 F -0.17 -2.22 17.24 2.25 0.04 -2.18 16 20 F -0.19 -2.10 17.32 2.25 0.04 -2.06 16 21 F -0.18 -2.27 14.72 2.25 0.03 -2.24 16 22 C 0.06 0.93 5.58 -1.81 -0.01 0.92 16 23 C 0.47 11.61 3.03 -154.63 -0.47 11.14 16 24 C -0.13 -2.90 8.64 -39.22 -0.34 -3.24 16 25 C -0.08 -1.56 10.17 -39.31 -0.40 -1.96 16 26 C -0.21 -3.91 10.11 -39.40 -0.40 -4.31 16 27 C 0.11 2.29 11.18 -17.57 -0.20 2.09 16 28 N -0.49 -12.26 10.28 -12.34 -0.13 -12.39 16 29 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.09 1.39 6.84 -51.93 -0.36 1.04 16 31 H 0.08 1.41 7.84 -51.93 -0.41 1.00 16 32 H 0.05 0.65 7.30 -51.92 -0.38 0.28 16 33 H 0.09 1.14 7.51 -51.93 -0.39 0.75 16 34 H 0.12 1.09 8.11 -51.93 -0.42 0.67 16 35 H 0.08 0.83 7.82 -51.93 -0.41 0.42 16 36 H 0.06 1.05 7.40 -51.93 -0.38 0.67 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.11 2.54 8.06 -52.49 -0.42 2.11 16 39 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.13 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -29.36 348.72 -7.56 -36.92 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.65 Total: 7.02 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -2.38 Total: 10.21 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.96 Total: -51.88 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.09 Total: -14.79 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.11 Total: -6.48 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.36 -7.56 -36.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.878 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds