Wall clock time and date at job start Wed Apr 1 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99852 * 2 1 4 4 H 1.48496 * 109.47311 * 269.99843 * 3 2 1 5 5 H 1.48506 * 109.47041 * 29.99876 * 3 2 1 6 6 H 1.48502 * 109.47023 * 149.99544 * 3 2 1 7 7 C 1.37875 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99661 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00276 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47162 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47371 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00316 * 179.97438 * 11 10 9 13 13 O 1.21352 * 119.99973 * 359.97438 * 12 11 10 14 14 C 1.49448 * 120.00127 * 180.02562 * 12 11 10 15 15 O 1.21352 * 119.99899 * 359.97438 * 14 12 11 16 16 N 1.34772 * 120.00127 * 180.02562 * 14 12 11 17 17 C 1.46500 * 120.00198 * 179.97438 * 16 14 12 18 18 C 1.50703 * 109.47372 * 179.97438 * 17 16 14 19 19 C 1.34547 * 126.07940 * 95.00434 * 18 17 16 20 20 O 1.34775 * 107.27027 * 180.23217 * 19 18 17 21 21 C 1.34428 * 107.69223 * 359.57168 * 20 19 18 22 22 C 1.47829 * 125.72382 * 180.16177 * 21 20 19 23 23 C 1.39565 * 120.14336 * 180.02562 * 22 21 20 24 24 C 1.37963 * 119.84908 * 179.75023 * 23 22 21 25 25 C 1.38353 * 120.14780 * 0.55089 * 24 23 22 26 26 C 1.38350 * 120.28994 * 359.70440 * 25 24 23 27 27 C 1.37960 * 120.14649 * 0.02562 * 26 25 24 28 28 N 1.31215 * 108.55144 * 0.43585 * 21 20 19 29 29 H 0.96997 * 120.00349 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46901 * 59.99849 * 9 7 2 31 31 H 1.08995 * 109.46740 * 300.00058 * 9 7 2 32 32 H 1.09005 * 109.47284 * 59.99627 * 10 9 7 33 33 H 1.08999 * 109.47207 * 300.00163 * 10 9 7 34 34 H 0.97003 * 119.99740 * 0.02562 * 11 10 9 35 35 H 0.97003 * 119.99944 * 0.02562 * 16 14 12 36 36 H 1.09006 * 109.46518 * 60.00436 * 17 16 14 37 37 H 1.08999 * 109.47372 * 300.00469 * 17 16 14 38 38 H 1.08002 * 126.36062 * 359.96113 * 19 18 17 39 39 H 1.07997 * 120.07336 * 0.02562 * 23 22 21 40 40 H 1.08002 * 119.92659 * 180.27744 * 24 23 22 41 41 H 1.08006 * 119.85527 * 179.71956 * 25 24 23 42 42 H 1.07999 * 119.92774 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.07227 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4866 -2.6365 0.0022 12 6 6.1605 -3.8036 0.0028 13 8 5.5538 -4.8546 0.0029 14 6 7.6550 -3.8036 0.0046 15 8 8.2617 -2.7527 0.0050 16 7 8.3289 -4.9708 0.0047 17 6 9.7939 -4.9708 0.0059 18 6 10.2963 -6.3916 0.0064 19 6 10.6508 -7.1071 -1.0765 20 8 11.0351 -8.3242 -0.6437 21 6 10.9208 -8.3364 0.6957 22 6 11.2424 -9.4772 1.5790 23 6 11.0791 -9.3618 2.9603 24 6 11.3762 -10.4321 3.7786 25 6 11.8458 -11.6140 3.2339 26 6 12.0149 -11.7331 1.8659 27 6 11.7163 -10.6724 1.0359 28 7 10.4703 -7.1677 1.0868 29 1 -0.4850 0.8400 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6586 -3.1502 -0.8892 33 1 3.6580 -3.1505 0.8907 34 1 5.9716 -1.7964 0.0033 35 1 7.8439 -5.8108 0.0033 36 1 10.1564 -4.4573 0.8965 37 1 10.1580 -4.4565 -0.8835 38 1 10.6271 -6.7702 -2.1024 39 1 10.7168 -8.4383 3.3872 40 1 11.2460 -10.3457 4.8473 41 1 12.0812 -12.4474 3.8793 42 1 12.3814 -12.6586 1.4469 43 1 11.8484 -10.7668 -0.0319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324534708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:31 Heat of formation + Delta-G solvation = -21.942518 kcal Electronic energy + Delta-G solvation = -27050.161372 eV Core-core repulsion = 22869.152956 eV Total energy + Delta-G solvation = -4181.008416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.84522 -40.48847 -39.54535 -38.42546 -36.27596 -35.29935 -34.44593 -32.89425 -32.73362 -31.52437 -30.31421 -30.07752 -27.51180 -25.58295 -24.41355 -23.51974 -23.01446 -21.70342 -21.33397 -20.89565 -20.30442 -18.73374 -18.00529 -17.28584 -17.02321 -16.99610 -16.53507 -16.19581 -15.96014 -15.67390 -15.33610 -14.94120 -14.81409 -14.44564 -14.19176 -14.17017 -13.99606 -13.62538 -13.45289 -13.38336 -13.12508 -12.71589 -12.61405 -12.02522 -11.86981 -11.67748 -11.60610 -11.49938 -11.24840 -11.05903 -10.44409 -10.35114 -10.27205 -9.95858 -9.53880 -9.49727 -9.48729 -9.32080 -8.77888 -8.77472 -8.61203 -6.12238 -4.13019 0.11296 0.82792 1.17824 1.51573 2.02758 2.10708 2.64734 3.26718 3.27121 3.28458 3.34299 3.34807 3.36752 3.84562 4.08421 4.25748 4.37917 4.39121 4.42303 4.55444 4.64336 4.82905 4.88670 4.94005 5.10536 5.20895 5.23100 5.28342 5.37833 5.47425 5.57521 5.85821 5.88509 5.93554 5.94259 5.96763 6.10386 6.31877 6.47024 6.50711 6.90261 7.08171 7.16487 7.18568 7.52594 7.62553 7.81552 8.19991 8.41845 8.90973 9.47691 11.00498 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.001566 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.582805 B =17873.892690 C =18430.249085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.690 5.690 12 C 0.500 3.500 13 O -0.528 6.528 14 C 0.511 3.489 15 O -0.520 6.520 16 N -0.701 5.701 17 C 0.203 3.797 18 C -0.032 4.032 19 C -0.039 4.039 20 O -0.193 6.193 21 C 0.236 3.764 22 C -0.021 4.021 23 C -0.069 4.069 24 C -0.121 4.121 25 C -0.099 4.099 26 C -0.122 4.122 27 C -0.089 4.089 28 N -0.456 5.456 29 H 0.265 0.735 30 H 0.025 0.975 31 H 0.020 0.980 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.409 0.591 35 H 0.415 0.585 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.224 0.776 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.870 -22.408 1.815 37.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.005 3.995 11 N -0.341 5.341 12 C 0.279 3.721 13 O -0.405 6.405 14 C 0.292 3.708 15 O -0.395 6.395 16 N -0.356 5.356 17 C 0.080 3.920 18 C -0.153 4.153 19 C -0.112 4.112 20 O -0.079 6.079 21 C 0.032 3.968 22 C -0.022 4.022 23 C -0.088 4.088 24 C -0.139 4.139 25 C -0.118 4.118 26 C -0.140 4.140 27 C -0.108 4.108 28 N -0.184 5.184 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.245 0.755 35 H 0.251 0.749 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.240 0.760 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 29.573 -22.108 2.416 37.002 hybrid contribution 0.444 0.818 -0.860 1.267 sum 30.017 -21.290 1.556 36.834 Atomic orbital electron populations 1.69898 1.06290 1.27123 1.50231 1.24982 0.94763 0.99161 0.94245 0.86767 0.80353 0.83487 0.78605 1.20166 1.21223 1.18941 1.20878 0.88442 0.94960 1.52000 0.90545 1.19826 0.98104 0.90965 0.97257 1.21724 0.74674 1.00860 1.02206 1.46199 1.09523 1.07978 1.70416 1.19893 0.87537 0.85278 0.79403 1.90757 1.69601 1.31021 1.49141 1.20423 0.89079 0.83977 0.77290 1.90763 1.70021 1.30937 1.47779 1.45733 1.06558 1.09439 1.73870 1.19504 0.79371 0.88658 1.04482 1.21622 1.06548 0.98426 0.88704 1.25086 1.02625 0.82193 1.01254 1.84533 1.65701 1.33822 1.23809 1.23824 0.99902 0.94279 0.78779 1.17281 1.04341 0.89440 0.91141 1.21245 0.96672 0.99744 0.91113 1.21169 0.99504 0.92849 1.00366 1.21418 0.97247 0.97822 0.95321 1.21098 1.00583 0.98727 0.93590 1.21254 0.97158 0.91829 1.00572 1.70552 1.15824 1.01264 1.30777 0.92504 0.95682 0.96136 0.91233 0.91217 0.75536 0.74891 0.88944 0.88868 0.75966 0.84252 0.84901 0.85340 0.85118 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 8 H 0.08 2.28 7.99 -52.48 -0.42 1.87 16 9 C -0.02 -0.54 4.16 -27.88 -0.12 -0.66 16 10 C 0.13 2.54 5.61 -4.04 -0.02 2.52 16 11 N -0.69 -11.85 5.55 -60.73 -0.34 -12.18 16 12 C 0.50 8.28 7.89 -11.59 -0.09 8.18 16 13 O -0.53 -9.86 16.48 5.50 0.09 -9.77 16 14 C 0.51 7.27 7.89 -11.59 -0.09 7.18 16 15 O -0.52 -8.16 16.48 5.50 0.09 -8.07 16 16 N -0.70 -7.99 5.54 -61.91 -0.34 -8.33 16 17 C 0.20 1.88 6.21 -5.19 -0.03 1.85 16 18 C -0.03 -0.29 6.47 -82.88 -0.54 -0.83 16 19 C -0.04 -0.28 12.08 29.43 0.36 0.07 16 20 O -0.19 -1.67 10.52 4.06 0.04 -1.63 16 21 C 0.24 2.30 7.90 -13.89 -0.11 2.19 16 22 C -0.02 -0.17 5.87 -104.98 -0.62 -0.79 16 23 C -0.07 -0.52 9.69 -39.19 -0.38 -0.90 16 24 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16 25 C -0.10 -0.47 10.04 -39.50 -0.40 -0.87 16 26 C -0.12 -0.61 10.03 -39.64 -0.40 -1.01 16 27 C -0.09 -0.57 9.72 -39.19 -0.38 -0.95 16 28 N -0.46 -4.93 10.91 -7.97 -0.09 -5.01 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 31 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.41 6.47 7.94 -40.82 -0.32 6.15 16 35 H 0.41 4.68 7.94 -40.82 -0.32 4.35 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.22 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.14 1.08 7.83 -52.49 -0.41 0.67 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.13 0.32 8.06 -52.48 -0.42 -0.10 16 42 H 0.13 0.36 8.06 -52.49 -0.42 -0.07 16 43 H 0.13 0.69 7.90 -52.48 -0.41 0.27 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -34.26 383.86 -7.51 -41.77 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.21 Total: 5.46 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -3.64 Total: 1.93 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.01 Total: -51.93 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.22 Total: -19.47 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.26 -7.51 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324534708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.825 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds