Wall clock time and date at job start Wed Apr 1 2020 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99852 * 2 1 4 4 H 1.48496 * 109.47311 * 269.99843 * 3 2 1 5 5 H 1.48506 * 109.47041 * 29.99876 * 3 2 1 6 6 H 1.48502 * 109.47023 * 149.99544 * 3 2 1 7 7 C 1.37875 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99661 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00276 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47162 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47371 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00316 * 179.97438 * 11 10 9 13 13 O 1.21352 * 119.99973 * 359.97438 * 12 11 10 14 14 C 1.49448 * 120.00127 * 180.02562 * 12 11 10 15 15 O 1.21352 * 119.99899 * 359.97438 * 14 12 11 16 16 N 1.34772 * 120.00127 * 180.02562 * 14 12 11 17 17 C 1.46500 * 120.00198 * 179.97438 * 16 14 12 18 18 C 1.50703 * 109.47372 * 179.97438 * 17 16 14 19 19 C 1.34547 * 126.07940 * 95.00434 * 18 17 16 20 20 O 1.34775 * 107.27027 * 180.23217 * 19 18 17 21 21 C 1.34428 * 107.69223 * 359.57168 * 20 19 18 22 22 C 1.47829 * 125.72382 * 180.16177 * 21 20 19 23 23 C 1.39565 * 120.14336 * 180.02562 * 22 21 20 24 24 C 1.37963 * 119.84908 * 179.75023 * 23 22 21 25 25 C 1.38353 * 120.14780 * 0.55089 * 24 23 22 26 26 C 1.38350 * 120.28994 * 359.70440 * 25 24 23 27 27 C 1.37960 * 120.14649 * 0.02562 * 26 25 24 28 28 N 1.31215 * 108.55144 * 0.43585 * 21 20 19 29 29 H 0.96997 * 120.00349 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46901 * 59.99849 * 9 7 2 31 31 H 1.08995 * 109.46740 * 300.00058 * 9 7 2 32 32 H 1.09005 * 109.47284 * 59.99627 * 10 9 7 33 33 H 1.08999 * 109.47207 * 300.00163 * 10 9 7 34 34 H 0.97003 * 119.99740 * 0.02562 * 11 10 9 35 35 H 0.97003 * 119.99944 * 0.02562 * 16 14 12 36 36 H 1.09006 * 109.46518 * 60.00436 * 17 16 14 37 37 H 1.08999 * 109.47372 * 300.00469 * 17 16 14 38 38 H 1.08002 * 126.36062 * 359.96113 * 19 18 17 39 39 H 1.07997 * 120.07336 * 0.02562 * 23 22 21 40 40 H 1.08002 * 119.92659 * 180.27744 * 24 23 22 41 41 H 1.08006 * 119.85527 * 179.71956 * 25 24 23 42 42 H 1.07999 * 119.92774 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.07227 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4866 -2.6365 0.0022 12 6 6.1605 -3.8036 0.0028 13 8 5.5538 -4.8546 0.0029 14 6 7.6550 -3.8036 0.0046 15 8 8.2617 -2.7527 0.0050 16 7 8.3289 -4.9708 0.0047 17 6 9.7939 -4.9708 0.0059 18 6 10.2963 -6.3916 0.0064 19 6 10.6508 -7.1071 -1.0765 20 8 11.0351 -8.3242 -0.6437 21 6 10.9208 -8.3364 0.6957 22 6 11.2424 -9.4772 1.5790 23 6 11.0791 -9.3618 2.9603 24 6 11.3762 -10.4321 3.7786 25 6 11.8458 -11.6140 3.2339 26 6 12.0149 -11.7331 1.8659 27 6 11.7163 -10.6724 1.0359 28 7 10.4703 -7.1677 1.0868 29 1 -0.4850 0.8400 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6586 -3.1502 -0.8892 33 1 3.6580 -3.1505 0.8907 34 1 5.9716 -1.7964 0.0033 35 1 7.8439 -5.8108 0.0033 36 1 10.1564 -4.4573 0.8965 37 1 10.1580 -4.4565 -0.8835 38 1 10.6271 -6.7702 -2.1024 39 1 10.7168 -8.4383 3.3872 40 1 11.2460 -10.3457 4.8473 41 1 12.0812 -12.4474 3.8793 42 1 12.3814 -12.6586 1.4469 43 1 11.8484 -10.7668 -0.0319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324534708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:30 Heat of formation + Delta-G solvation = -48.868308 kcal Electronic energy + Delta-G solvation = -27051.328962 eV Core-core repulsion = 22869.152956 eV Total energy + Delta-G solvation = -4182.176006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.48386 -41.72498 -39.98159 -39.70023 -37.24069 -36.69681 -35.38487 -34.76891 -33.38676 -32.13533 -31.95539 -30.76192 -28.43423 -27.16197 -24.97206 -24.68833 -23.71536 -22.66341 -22.29686 -21.96743 -21.51653 -19.83028 -19.02533 -18.73722 -18.08760 -17.67169 -17.52282 -17.21193 -16.64360 -16.58808 -16.36579 -16.19327 -16.04197 -15.84534 -15.22834 -15.04501 -14.85568 -14.60585 -14.57948 -14.40787 -13.94419 -13.91144 -13.61925 -13.39679 -13.07077 -12.93065 -12.50990 -12.41801 -12.23159 -12.19864 -12.10102 -11.78231 -11.71989 -11.51599 -10.95865 -10.79020 -10.65944 -10.45996 -10.25724 -9.97561 -9.32253 -8.30241 -6.37237 -0.41024 0.27835 0.39405 0.56729 1.20900 1.39859 1.41670 1.52844 1.53870 1.67937 2.08057 2.36532 2.64185 2.72142 2.82954 3.05053 3.38792 3.44107 3.73802 3.95121 4.00012 4.19155 4.25853 4.33200 4.38200 4.39806 4.45644 4.49512 4.66633 4.71002 4.71906 4.86270 4.95806 4.97415 4.99056 5.06388 5.28819 5.36920 5.38910 5.45840 5.51747 5.58344 5.83744 5.92159 6.19776 6.28914 6.52711 6.63064 6.71112 6.89014 7.27474 8.86029 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.001566 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.582805 B =17873.892690 C =18430.249085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.537 4.537 8 H 0.035 0.965 9 C -0.017 4.017 10 C 0.141 3.859 11 N -0.686 5.686 12 C 0.501 3.499 13 O -0.551 6.551 14 C 0.521 3.479 15 O -0.533 6.533 16 N -0.687 5.687 17 C 0.207 3.793 18 C -0.057 4.057 19 C -0.019 4.019 20 O -0.196 6.196 21 C 0.226 3.774 22 C -0.045 4.045 23 C -0.087 4.087 24 C -0.125 4.125 25 C -0.097 4.097 26 C -0.122 4.122 27 C -0.095 4.095 28 N -0.486 5.486 29 H 0.268 0.732 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.419 0.581 35 H 0.416 0.584 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.264 0.736 39 H 0.126 0.874 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.846 -22.789 1.335 40.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.576 4.576 8 H 0.053 0.947 9 C -0.055 4.055 10 C 0.018 3.982 11 N -0.338 5.338 12 C 0.281 3.719 13 O -0.430 6.430 14 C 0.301 3.699 15 O -0.410 6.410 16 N -0.340 5.340 17 C 0.085 3.915 18 C -0.177 4.177 19 C -0.091 4.091 20 O -0.082 6.082 21 C 0.022 3.978 22 C -0.046 4.046 23 C -0.106 4.106 24 C -0.143 4.143 25 C -0.115 4.115 26 C -0.139 4.139 27 C -0.115 4.115 28 N -0.215 5.215 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.256 0.744 35 H 0.252 0.748 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.280 0.720 39 H 0.144 0.856 40 H 0.168 0.832 41 H 0.174 0.826 42 H 0.175 0.825 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 32.596 -22.518 1.938 39.666 hybrid contribution -0.488 0.752 -0.693 1.133 sum 32.108 -21.766 1.246 38.811 Atomic orbital electron populations 1.70057 1.08414 1.28389 1.51889 1.25990 0.95625 1.03585 0.93724 0.85619 0.79626 0.77825 0.79335 1.18997 1.21179 1.16419 1.21205 0.91224 0.93567 1.51568 0.94667 1.19694 0.94737 0.92823 0.98231 1.21292 0.76534 0.99024 1.01311 1.45963 1.08223 1.08876 1.70714 1.20312 0.88776 0.84500 0.78269 1.90749 1.70467 1.31799 1.49970 1.19820 0.87630 0.84569 0.77844 1.90765 1.69736 1.31447 1.49082 1.45748 1.07654 1.08517 1.72084 1.19624 0.77541 0.89127 1.05240 1.21667 1.08344 0.98581 0.89135 1.25832 0.99891 0.81059 1.02311 1.84552 1.65708 1.34491 1.23463 1.24133 0.99979 0.94450 0.79281 1.17497 1.05870 0.89942 0.91330 1.21284 0.97823 1.00121 0.91368 1.21434 0.99066 0.92668 1.01136 1.21795 0.95889 0.98104 0.95738 1.21461 0.99618 0.99159 0.93682 1.21446 0.97064 0.91631 1.01332 1.70505 1.16862 1.02139 1.32000 0.92313 0.94604 0.94574 0.92129 0.92397 0.74424 0.74758 0.89793 0.86407 0.72034 0.85559 0.83193 0.82577 0.82519 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.95 42.77 27.47 68.60 1.88 44.65 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 7 C -0.54 -30.35 9.66 25.60 0.25 -30.11 16 8 H 0.03 2.21 7.99 -2.91 -0.02 2.18 16 9 C -0.02 -0.76 4.16 29.85 0.12 -0.64 16 10 C 0.14 5.64 5.61 86.38 0.48 6.12 16 11 N -0.69 -22.75 5.55 -464.41 -2.58 -25.33 16 12 C 0.50 16.16 7.89 87.27 0.69 16.85 16 13 O -0.55 -20.45 16.48 -3.25 -0.05 -20.50 16 14 C 0.52 14.09 7.89 87.27 0.69 14.78 16 15 O -0.53 -15.78 16.48 -3.25 -0.05 -15.84 16 16 N -0.69 -14.80 5.54 -468.14 -2.59 -17.39 16 17 C 0.21 3.52 6.21 85.63 0.53 4.06 16 18 C -0.06 -0.99 6.47 41.36 0.27 -0.72 16 19 C -0.02 -0.24 12.08 66.97 0.81 0.57 16 20 O -0.20 -3.22 10.52 -8.37 -0.09 -3.31 16 21 C 0.23 4.43 7.90 87.33 0.69 5.12 16 22 C -0.05 -0.76 5.87 -20.10 -0.12 -0.88 16 23 C -0.09 -1.35 9.69 22.53 0.22 -1.13 16 24 C -0.13 -1.31 10.03 22.23 0.22 -1.08 16 25 C -0.10 -0.73 10.04 22.32 0.22 -0.50 16 26 C -0.12 -0.97 10.03 22.23 0.22 -0.75 16 27 C -0.10 -1.15 9.72 22.53 0.22 -0.93 16 28 N -0.49 -10.66 10.91 -293.19 -3.20 -13.86 16 29 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 31 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 32 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 34 H 0.42 12.41 7.94 -92.71 -0.74 11.67 16 35 H 0.42 9.02 7.94 -92.71 -0.74 8.29 16 36 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 38 H 0.26 0.72 8.06 -2.91 -0.02 0.70 16 39 H 0.13 2.18 7.83 -2.91 -0.02 2.15 16 40 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 41 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 43 H 0.14 1.33 7.90 -2.91 -0.02 1.31 16 Total: -1.00 -75.90 383.86 -0.85 -76.76 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.45 Total: 21.55 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.98 Total: 11.70 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -8.07 Total: -115.02 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.20 Total: -39.64 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Total: -75.90 -0.85 -76.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324534708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.889 kcal (2) G-P(sol) polarization free energy of solvation -75.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds