Wall clock time and date at job start Wed Apr 1 2020 02:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47033 * 240.00298 * 3 2 1 5 5 H 1.48500 * 109.46866 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47153 * 120.00241 * 3 2 1 7 7 C 1.37878 * 120.00528 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99927 * 181.99258 * 7 2 1 9 9 C 1.50699 * 119.99327 * 1.99758 * 7 2 1 10 10 H 1.09008 * 109.46741 * 175.35289 * 9 7 2 11 11 C 1.50691 * 109.47683 * 55.35073 * 9 7 2 12 12 O 1.21284 * 120.00492 * 240.00163 * 11 9 7 13 13 N 1.34779 * 120.00208 * 59.99808 * 11 9 7 14 14 C 1.47150 * 120.97902 * 0.02562 * 13 11 9 15 15 C 1.53295 * 108.38406 * 129.48975 * 14 13 11 16 16 O 1.42958 * 109.22529 * 52.30232 * 15 14 13 17 17 C 1.42963 * 114.16571 * 297.42251 * 16 15 14 18 18 H 1.09004 * 109.50937 * 302.65189 * 17 16 15 19 19 C 1.50700 * 109.51252 * 182.55486 * 17 16 15 20 20 N 1.34501 * 126.28678 * 134.81302 * 19 17 16 21 21 C 1.31132 * 105.61301 * 179.90231 * 20 19 17 22 22 O 1.33646 * 106.89695 * 0.35269 * 21 20 19 23 23 N 1.21303 * 109.81269 * 359.77052 * 22 21 20 24 24 C 1.47148 * 120.98450 * 180.02562 * 13 11 9 25 25 C 1.50704 * 109.46970 * 295.34613 * 9 7 2 26 26 C 1.38234 * 120.00100 * 346.95588 * 25 9 7 27 27 C 1.38232 * 119.99542 * 179.79026 * 26 25 9 28 28 C 1.38230 * 120.00546 * 0.45364 * 27 26 25 29 29 C 1.38234 * 119.99874 * 359.77741 * 28 27 26 30 30 C 1.38238 * 119.99519 * 167.22294 * 25 9 7 31 31 H 0.96999 * 119.99823 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.68602 * 9.76460 * 14 13 11 33 33 H 1.09002 * 109.68495 * 249.20880 * 14 13 11 34 34 H 1.09004 * 109.51287 * 292.37529 * 15 14 13 35 35 H 1.08997 * 109.51290 * 172.22959 * 15 14 13 36 36 H 1.07998 * 126.54917 * 180.12208 * 21 20 19 37 37 H 1.09005 * 109.68272 * 110.78679 * 24 13 11 38 38 H 1.08996 * 109.68089 * 350.23710 * 24 13 11 39 39 H 1.07998 * 119.99801 * 359.97438 * 26 25 9 40 40 H 1.08010 * 119.99634 * 180.25171 * 27 26 25 41 41 H 1.08004 * 120.00421 * 179.79158 * 28 27 26 42 42 H 1.08002 * 120.00543 * 179.97438 * 29 28 27 43 43 H 1.08000 * 120.00275 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0841 -1.1942 0.0331 9 6 1.2518 -2.4987 -0.0444 10 1 1.9597 -3.3242 -0.1203 11 6 0.3368 -2.5098 -1.2416 12 8 -0.8604 -2.6297 -1.0889 13 7 0.8487 -2.3865 -2.4823 14 6 2.2978 -2.2404 -2.6926 15 6 2.7394 -3.2647 -3.7442 16 8 1.9133 -3.1350 -4.9037 17 6 0.5300 -3.4103 -4.6705 18 1 0.4222 -4.4170 -4.2665 19 6 -0.2300 -3.3046 -5.9676 20 7 -1.1533 -4.1705 -6.4221 21 6 -1.5506 -3.6897 -7.5755 22 8 -0.8594 -2.5654 -7.7865 23 7 -0.1094 -2.3629 -6.8549 24 6 -0.0248 -2.3941 -3.6664 25 6 0.4355 -2.6512 1.2132 26 6 0.6637 -1.8160 2.2909 27 6 -0.0881 -1.9531 3.4428 28 6 -1.0615 -2.9314 3.5206 29 6 -1.2865 -3.7697 2.4447 30 6 -0.5376 -3.6299 1.2911 31 1 -0.4850 0.8401 0.0004 32 1 2.8251 -2.4245 -1.7566 33 1 2.5177 -1.2331 -3.0464 34 1 2.6397 -4.2708 -3.3368 35 1 3.7792 -3.0825 -4.0157 36 1 -2.2918 -4.1217 -8.2316 37 1 -0.0392 -1.4022 -4.1184 38 1 -1.0354 -2.6800 -3.3752 39 1 1.4272 -1.0545 2.2317 40 1 0.0874 -1.2978 4.2833 41 1 -1.6466 -3.0407 4.4218 42 1 -2.0467 -4.5344 2.5055 43 1 -0.7132 -4.2849 0.4506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433905708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:17 Heat of formation + Delta-G solvation = 39.868039 kcal Electronic energy + Delta-G solvation = -30664.244351 eV Core-core repulsion = 26485.916241 eV Total energy + Delta-G solvation = -4178.328110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.74706 -39.82767 -38.51652 -37.17836 -35.95559 -34.05475 -33.67926 -32.89334 -31.08750 -30.60970 -29.70172 -27.92998 -27.10713 -24.92037 -24.27161 -23.78564 -22.78657 -21.44094 -21.25820 -20.25092 -18.61956 -18.14003 -18.03461 -17.12870 -16.51675 -15.97338 -15.58200 -15.44884 -15.32533 -14.91853 -14.85695 -14.63444 -14.10136 -13.79819 -13.54750 -13.20289 -12.72722 -12.59587 -12.51228 -12.29529 -12.10306 -11.86659 -11.81391 -11.54221 -11.35550 -11.21213 -11.13878 -10.96274 -10.84109 -10.66356 -10.39814 -10.27491 -10.08395 -9.84623 -9.71319 -9.43806 -8.76227 -8.40459 -7.78885 -7.71370 -7.43224 -6.18877 -4.34889 1.09012 2.04276 2.51322 2.58782 2.87749 3.17086 3.18246 3.25350 3.27046 3.68255 3.98261 4.09610 4.25216 4.29207 4.89241 4.94089 4.98393 5.05208 5.21395 5.35868 5.43098 5.51788 5.63323 5.75107 5.83622 5.85492 5.93494 5.99485 6.05707 6.15645 6.31746 6.44178 6.49633 6.64718 6.69777 6.82624 7.09528 7.10790 7.17053 7.27794 7.52621 7.60906 7.62622 7.72952 8.07168 8.11639 8.22185 8.37084 8.67208 9.30583 9.50621 10.81634 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.003808 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.525344 B = 7351.634148 C = 8459.915438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.076 3.924 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.060 3.940 10 H 0.057 0.943 11 C 0.556 3.444 12 O -0.541 6.541 13 N -0.616 5.616 14 C 0.089 3.911 15 C 0.046 3.954 16 O -0.376 6.376 17 C 0.172 3.828 18 H 0.092 0.908 19 C 0.180 3.820 20 N -0.476 5.476 21 C 0.154 3.846 22 O 0.081 5.919 23 N -0.353 5.353 24 C 0.100 3.900 25 C -0.016 4.016 26 C -0.064 4.064 27 C -0.147 4.147 28 C -0.144 4.144 29 C -0.144 4.144 30 C -0.101 4.101 31 H 0.266 0.734 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.264 0.736 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 -7.413 -9.468 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.132 4.132 3 Si 0.712 3.288 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.039 3.961 10 H 0.075 0.925 11 C 0.348 3.652 12 O -0.416 6.416 13 N -0.351 5.351 14 C -0.035 4.035 15 C -0.032 4.032 16 O -0.294 6.294 17 C 0.112 3.888 18 H 0.110 0.890 19 C -0.094 4.094 20 N -0.210 5.210 21 C -0.087 4.087 22 O 0.019 5.981 23 N -0.057 5.057 24 C -0.025 4.025 25 C -0.017 4.017 26 C -0.082 4.082 27 C -0.166 4.166 28 C -0.162 4.162 29 C -0.162 4.162 30 C -0.119 4.119 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.280 0.720 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.146 0.854 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.878 -6.907 -9.055 11.422 hybrid contribution -0.135 1.097 -0.166 1.117 sum 0.742 -5.810 -9.222 10.925 Atomic orbital electron populations 1.70046 1.05509 1.27230 1.44499 1.25029 0.94798 0.99196 0.94222 0.86742 0.79776 0.83295 0.78940 1.19951 1.21282 1.19851 1.20614 0.92846 0.88622 1.55854 0.91274 1.17877 0.92652 0.98183 0.87395 0.92482 1.21220 0.89155 0.71792 0.83046 1.90544 1.16706 1.49604 1.84783 1.47873 1.06328 1.75892 1.05054 1.22360 0.82034 0.98721 1.00366 1.23267 0.94535 0.99214 0.86143 1.87906 1.16132 1.91096 1.34270 1.20349 0.81845 1.00466 0.86173 0.89024 1.25290 0.96912 0.88359 0.98817 1.71824 1.12244 1.27562 1.09341 1.30488 0.97992 0.85479 0.94777 1.85355 1.38429 1.37905 1.36405 1.74733 1.10859 1.22304 0.97852 1.21802 0.96531 0.97942 0.86246 1.19789 0.94666 0.92360 0.94861 1.21141 0.98484 0.97173 0.91394 1.20994 0.98151 0.99020 0.98393 1.20779 0.99559 0.97753 0.98112 1.20821 1.00559 1.00369 0.94444 1.20972 0.96008 0.98846 0.96090 0.92345 0.86490 0.91412 0.92625 0.87562 0.72038 0.91686 0.88338 0.85384 0.88024 0.88189 0.88083 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.67 10.90 55.43 0.60 -22.07 16 2 C 0.08 1.87 4.01 -17.82 -0.07 1.80 16 3 Si 0.89 19.52 29.54 -169.99 -5.02 14.50 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.54 -12.52 5.03 -34.44 -0.17 -12.69 16 8 H 0.07 1.52 7.70 -52.49 -0.40 1.11 16 9 C 0.06 1.35 1.99 -94.08 -0.19 1.17 16 10 H 0.06 1.16 7.66 -51.92 -0.40 0.76 16 11 C 0.56 12.93 5.41 -10.99 -0.06 12.87 16 12 O -0.54 -14.22 13.42 5.55 0.07 -14.15 16 13 N -0.62 -12.40 3.02 -172.31 -0.52 -12.92 16 14 C 0.09 1.51 5.72 -3.53 -0.02 1.49 16 15 C 0.05 0.63 6.98 37.31 0.26 0.89 16 16 O -0.38 -6.09 10.37 -35.23 -0.37 -6.45 16 17 C 0.17 2.80 3.33 -27.75 -0.09 2.71 16 18 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 19 C 0.18 2.77 7.11 -156.37 -1.11 1.66 16 20 N -0.48 -6.29 11.55 -13.71 -0.16 -6.45 16 21 C 0.15 1.33 13.40 51.99 0.70 2.03 16 22 O 0.08 0.93 11.31 18.09 0.20 1.14 16 23 N -0.35 -5.39 12.16 30.88 0.38 -5.01 16 24 C 0.10 1.89 5.91 -3.56 -0.02 1.87 16 25 C -0.02 -0.37 4.51 -104.62 -0.47 -0.84 16 26 C -0.06 -1.46 8.21 -39.58 -0.32 -1.79 16 27 C -0.15 -3.04 10.05 -39.59 -0.40 -3.44 16 28 C -0.14 -2.81 10.05 -39.59 -0.40 -3.21 16 29 C -0.14 -2.92 10.05 -39.58 -0.40 -3.31 16 30 C -0.10 -2.25 8.21 -39.58 -0.33 -2.58 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.12 1.97 5.09 -51.93 -0.26 1.71 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.26 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.10 2.00 7.08 -51.93 -0.37 1.63 16 39 H 0.13 3.01 6.04 -52.49 -0.32 2.70 16 40 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 41 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.11 2.35 7.01 -52.49 -0.37 1.98 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -32.54 355.37 -7.60 -40.14 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.06 Total: 7.30 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.09 Total: -1.38 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.30 Total: -46.45 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.09 Total: -19.46 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.54 -7.60 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433905708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.012 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds