Wall clock time and date at job start Wed Apr 1 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47033 * 240.00298 * 3 2 1 5 5 H 1.48500 * 109.46866 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47153 * 120.00241 * 3 2 1 7 7 C 1.37878 * 120.00528 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99927 * 181.99258 * 7 2 1 9 9 C 1.50699 * 119.99327 * 1.99758 * 7 2 1 10 10 H 1.09008 * 109.46741 * 175.35289 * 9 7 2 11 11 C 1.50691 * 109.47683 * 55.35073 * 9 7 2 12 12 O 1.21284 * 120.00492 * 240.00163 * 11 9 7 13 13 N 1.34779 * 120.00208 * 59.99808 * 11 9 7 14 14 C 1.47150 * 120.97902 * 0.02562 * 13 11 9 15 15 C 1.53295 * 108.38406 * 129.48975 * 14 13 11 16 16 O 1.42958 * 109.22529 * 52.30232 * 15 14 13 17 17 C 1.42963 * 114.16571 * 297.42251 * 16 15 14 18 18 H 1.09004 * 109.50937 * 302.65189 * 17 16 15 19 19 C 1.50700 * 109.51252 * 182.55486 * 17 16 15 20 20 N 1.34501 * 126.28678 * 134.81302 * 19 17 16 21 21 C 1.31132 * 105.61301 * 179.90231 * 20 19 17 22 22 O 1.33646 * 106.89695 * 0.35269 * 21 20 19 23 23 N 1.21303 * 109.81269 * 359.77052 * 22 21 20 24 24 C 1.47148 * 120.98450 * 180.02562 * 13 11 9 25 25 C 1.50704 * 109.46970 * 295.34613 * 9 7 2 26 26 C 1.38234 * 120.00100 * 346.95588 * 25 9 7 27 27 C 1.38232 * 119.99542 * 179.79026 * 26 25 9 28 28 C 1.38230 * 120.00546 * 0.45364 * 27 26 25 29 29 C 1.38234 * 119.99874 * 359.77741 * 28 27 26 30 30 C 1.38238 * 119.99519 * 167.22294 * 25 9 7 31 31 H 0.96999 * 119.99823 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.68602 * 9.76460 * 14 13 11 33 33 H 1.09002 * 109.68495 * 249.20880 * 14 13 11 34 34 H 1.09004 * 109.51287 * 292.37529 * 15 14 13 35 35 H 1.08997 * 109.51290 * 172.22959 * 15 14 13 36 36 H 1.07998 * 126.54917 * 180.12208 * 21 20 19 37 37 H 1.09005 * 109.68272 * 110.78679 * 24 13 11 38 38 H 1.08996 * 109.68089 * 350.23710 * 24 13 11 39 39 H 1.07998 * 119.99801 * 359.97438 * 26 25 9 40 40 H 1.08010 * 119.99634 * 180.25171 * 27 26 25 41 41 H 1.08004 * 120.00421 * 179.79158 * 28 27 26 42 42 H 1.08002 * 120.00543 * 179.97438 * 29 28 27 43 43 H 1.08000 * 120.00275 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0841 -1.1942 0.0331 9 6 1.2518 -2.4987 -0.0444 10 1 1.9597 -3.3242 -0.1203 11 6 0.3368 -2.5098 -1.2416 12 8 -0.8604 -2.6297 -1.0889 13 7 0.8487 -2.3865 -2.4823 14 6 2.2978 -2.2404 -2.6926 15 6 2.7394 -3.2647 -3.7442 16 8 1.9133 -3.1350 -4.9037 17 6 0.5300 -3.4103 -4.6705 18 1 0.4222 -4.4170 -4.2665 19 6 -0.2300 -3.3046 -5.9676 20 7 -1.1533 -4.1705 -6.4221 21 6 -1.5506 -3.6897 -7.5755 22 8 -0.8594 -2.5654 -7.7865 23 7 -0.1094 -2.3629 -6.8549 24 6 -0.0248 -2.3941 -3.6664 25 6 0.4355 -2.6512 1.2132 26 6 0.6637 -1.8160 2.2909 27 6 -0.0881 -1.9531 3.4428 28 6 -1.0615 -2.9314 3.5206 29 6 -1.2865 -3.7697 2.4447 30 6 -0.5376 -3.6299 1.2911 31 1 -0.4850 0.8401 0.0004 32 1 2.8251 -2.4245 -1.7566 33 1 2.5177 -1.2331 -3.0464 34 1 2.6397 -4.2708 -3.3368 35 1 3.7792 -3.0825 -4.0157 36 1 -2.2918 -4.1217 -8.2316 37 1 -0.0392 -1.4022 -4.1184 38 1 -1.0354 -2.6800 -3.3752 39 1 1.4272 -1.0545 2.2317 40 1 0.0874 -1.2978 4.2833 41 1 -1.6466 -3.0407 4.4218 42 1 -2.0467 -4.5344 2.5055 43 1 -0.7132 -4.2849 0.4506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433905708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:16 Heat of formation + Delta-G solvation = 17.007257 kcal Electronic energy + Delta-G solvation = -30665.235669 eV Core-core repulsion = 26485.916241 eV Total energy + Delta-G solvation = -4179.319427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.74391 -41.36985 -40.05376 -38.80015 -36.97200 -35.76745 -35.34788 -33.98889 -32.74285 -31.97880 -31.35610 -29.50853 -28.62486 -26.40744 -25.53170 -25.14289 -24.04241 -22.98639 -22.69654 -21.82815 -20.13770 -19.20431 -19.17086 -18.77473 -17.73092 -17.49793 -17.24316 -16.96066 -16.70555 -16.41744 -16.21552 -16.00053 -15.65409 -15.41587 -15.15599 -14.78105 -14.31251 -14.02458 -13.95079 -13.64575 -13.61424 -13.54843 -13.14070 -12.96251 -12.78387 -12.73606 -12.60632 -12.59106 -12.31548 -12.18988 -11.80414 -11.76889 -11.45792 -11.32106 -11.23489 -11.11680 -10.64975 -10.23378 -9.40882 -9.36575 -9.10576 -8.09172 -6.26755 0.22056 0.86612 0.92655 1.05714 1.41119 1.44442 1.48717 1.96376 2.11481 2.29669 2.32845 2.45094 2.92861 3.18487 3.28318 3.31169 3.55613 3.76560 3.95302 4.11830 4.23047 4.27816 4.34449 4.36041 4.47331 4.51155 4.53747 4.61567 4.69308 4.72131 4.85897 4.97350 4.97892 5.03421 5.09399 5.14905 5.44648 5.53340 5.67244 5.71478 5.88274 5.89562 5.91966 5.97012 6.40165 6.52184 6.64277 6.86061 7.16371 7.40547 7.73661 8.89887 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.003808 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.525344 B = 7351.634148 C = 8459.915438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.040 3.960 3 Si 0.934 3.066 4 H -0.268 1.268 5 H -0.303 1.303 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.082 0.918 9 C 0.053 3.947 10 H 0.075 0.925 11 C 0.553 3.447 12 O -0.580 6.580 13 N -0.618 5.618 14 C 0.085 3.915 15 C 0.051 3.949 16 O -0.384 6.384 17 C 0.184 3.816 18 H 0.096 0.904 19 C 0.157 3.843 20 N -0.510 5.510 21 C 0.188 3.812 22 O 0.089 5.911 23 N -0.382 5.382 24 C 0.107 3.893 25 C -0.037 4.037 26 C -0.085 4.085 27 C -0.152 4.152 28 C -0.141 4.141 29 C -0.147 4.147 30 C -0.119 4.119 31 H 0.254 0.746 32 H 0.119 0.881 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.328 0.672 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 -8.483 -10.104 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.164 4.164 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.230 1.230 6 H -0.188 1.188 7 C -0.563 4.563 8 H 0.100 0.900 9 C 0.032 3.968 10 H 0.093 0.907 11 C 0.345 3.655 12 O -0.459 6.459 13 N -0.352 5.352 14 C -0.037 4.037 15 C -0.026 4.026 16 O -0.302 6.302 17 C 0.124 3.876 18 H 0.113 0.887 19 C -0.116 4.116 20 N -0.243 5.243 21 C -0.051 4.051 22 O 0.025 5.975 23 N -0.087 5.087 24 C -0.018 4.018 25 C -0.038 4.038 26 C -0.103 4.103 27 C -0.170 4.170 28 C -0.159 4.159 29 C -0.165 4.165 30 C -0.137 4.137 31 H 0.063 0.937 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.159 0.841 36 H 0.342 0.658 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.426 -7.994 -9.702 12.652 hybrid contribution -0.341 1.379 -0.032 1.421 sum 1.084 -6.615 -9.734 11.819 Atomic orbital electron populations 1.70226 1.06999 1.26657 1.47290 1.25551 0.94980 1.01640 0.94260 0.85964 0.78527 0.80041 0.79404 1.19267 1.23004 1.18761 1.20863 0.93325 0.88664 1.53484 0.90018 1.17990 0.92931 0.98561 0.87306 0.90737 1.21336 0.88697 0.71384 0.84042 1.90506 1.18254 1.51610 1.85565 1.47937 1.07866 1.74794 1.04623 1.22516 0.80159 0.99351 1.01684 1.23407 0.95666 0.98829 0.84678 1.87915 1.16046 1.91071 1.35134 1.20077 0.81978 0.99251 0.86311 0.88679 1.25175 0.98047 0.89454 0.98921 1.71802 1.12789 1.28287 1.11420 1.31807 0.96440 0.83228 0.93596 1.85305 1.38191 1.38820 1.35189 1.74720 1.12339 1.22941 0.98651 1.21697 0.95686 0.98005 0.86422 1.19918 0.95542 0.93145 0.95163 1.21131 0.99313 0.97306 0.92537 1.21319 0.97784 0.99553 0.98345 1.21177 0.99055 0.96546 0.99117 1.21186 1.00461 1.00982 0.93838 1.21037 0.96725 0.99070 0.96874 0.93726 0.86265 0.92613 0.91042 0.84101 0.65803 0.93428 0.90496 0.86793 0.85605 0.84496 0.85364 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.90 10.90 21.45 0.23 -48.66 16 2 C 0.04 1.99 4.01 84.65 0.34 2.33 16 3 Si 0.93 40.45 29.54 68.60 2.03 42.47 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.53 -24.39 5.03 25.60 0.13 -24.26 16 8 H 0.08 3.52 7.70 -2.91 -0.02 3.49 16 9 C 0.05 2.43 1.99 -13.03 -0.03 2.41 16 10 H 0.07 3.04 7.66 -2.38 -0.02 3.03 16 11 C 0.55 26.55 5.41 87.65 0.47 27.03 16 12 O -0.58 -31.93 13.42 -3.04 -0.04 -31.97 16 13 N -0.62 -25.58 3.02 -817.44 -2.47 -28.05 16 14 C 0.09 2.89 5.72 86.35 0.49 3.38 16 15 C 0.05 1.32 6.98 72.08 0.50 1.83 16 16 O -0.38 -12.15 10.37 -148.98 -1.54 -13.69 16 17 C 0.18 6.07 3.33 29.93 0.10 6.17 16 18 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 19 C 0.16 4.82 7.11 138.46 0.98 5.81 16 20 N -0.51 -12.86 11.55 -315.36 -3.64 -16.50 16 21 C 0.19 2.73 13.40 130.51 1.75 4.48 16 22 O 0.09 1.89 11.31 74.80 0.85 2.73 16 23 N -0.38 -11.51 12.16 -60.37 -0.73 -12.24 16 24 C 0.11 4.24 5.91 86.34 0.51 4.75 16 25 C -0.04 -1.74 4.51 -19.86 -0.09 -1.83 16 26 C -0.08 -3.90 8.21 22.27 0.18 -3.72 16 27 C -0.15 -6.09 10.05 22.27 0.22 -5.87 16 28 C -0.14 -5.22 10.05 22.27 0.22 -5.00 16 29 C -0.15 -5.78 10.05 22.27 0.22 -5.56 16 30 C -0.12 -5.37 8.21 22.27 0.18 -5.18 16 31 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.12 3.94 5.09 -2.39 -0.01 3.93 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.33 -0.38 8.06 -2.91 -0.02 -0.40 16 37 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.08 3.34 7.08 -2.39 -0.02 3.32 16 39 H 0.11 5.44 6.04 -2.91 -0.02 5.43 16 40 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 41 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 42 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 43 H 0.10 4.48 7.01 -2.91 -0.02 4.46 16 Total: -1.00 -74.28 355.37 1.93 -72.35 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 1.05 Total: 26.80 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 6.20 Total: 6.76 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -6.61 Total: -105.46 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.74 Total: -42.93 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Total: -74.28 1.93 -72.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433905708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.360 kcal (2) G-P(sol) polarization free energy of solvation -74.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds