Wall clock time and date at job start Wed Apr 1 2020 02:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99895 * 2 1 4 4 H 1.48493 * 109.47118 * 269.99911 * 3 2 1 5 5 H 1.48501 * 109.47097 * 29.99739 * 3 2 1 6 6 H 1.48498 * 109.47048 * 149.99594 * 3 2 1 7 7 C 1.37870 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00640 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99905 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46905 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46745 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47697 * 54.99829 * 11 10 9 13 13 N 1.46500 * 109.47369 * 294.99740 * 11 10 9 14 14 C 1.34770 * 120.00240 * 154.99867 * 13 11 10 15 15 O 1.21621 * 120.00060 * 0.02562 * 14 13 11 16 16 C 1.47215 * 119.99914 * 180.02562 * 14 13 11 17 17 C 1.37013 * 126.64059 * 180.02562 * 16 14 13 18 18 C 1.40957 * 105.46716 * 179.97438 * 17 16 14 19 19 C 1.47629 * 126.27812 * 179.97438 * 18 17 16 20 20 O 1.21483 * 119.99999 * 359.97438 * 19 18 17 21 21 O 1.34726 * 119.99956 * 180.02562 * 19 18 17 22 22 N 1.31997 * 107.44106 * 0.02562 * 18 17 16 23 23 N 1.28458 * 110.49196 * 359.73917 * 22 18 17 24 24 H 0.96990 * 125.06228 * 180.25758 * 23 22 18 25 25 C 1.50703 * 109.47337 * 174.99526 * 11 10 9 26 26 C 1.38235 * 120.00292 * 260.00106 * 25 11 10 27 27 C 1.38230 * 119.99899 * 179.97438 * 26 25 11 28 28 C 1.38235 * 120.00326 * 359.95697 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99503 * 79.97399 * 25 11 10 31 31 H 0.97001 * 120.00122 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.46715 * 60.00169 * 9 7 2 33 33 H 1.09003 * 109.46892 * 299.99900 * 9 7 2 34 34 H 1.08995 * 109.47486 * 60.00408 * 10 9 7 35 35 H 1.09003 * 109.47073 * 299.99555 * 10 9 7 36 36 H 0.96997 * 119.99726 * 335.00257 * 13 11 10 37 37 H 1.07998 * 127.26745 * 359.93958 * 17 16 14 38 38 H 0.96692 * 116.99808 * 180.02562 * 21 19 18 39 39 H 1.08001 * 119.99730 * 359.97438 * 26 25 11 40 40 H 1.08000 * 120.00376 * 179.97438 * 27 26 25 41 41 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 42 42 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 43 43 H 1.07997 * 120.00455 * 0.02562 * 30 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9870 0.0012 12 1 0.7891 -5.0072 -0.8414 13 7 0.7293 -5.1180 1.2522 14 6 -0.3723 -5.8929 1.2989 15 8 -0.7428 -6.4839 0.3025 16 6 -1.1273 -6.0240 2.5559 17 6 -2.2586 -6.7706 2.7562 18 6 -2.6026 -6.5761 4.1092 19 6 -3.7553 -7.1734 4.8120 20 8 -4.5142 -7.9114 4.2160 21 8 -3.9662 -6.8993 6.1141 22 7 -1.7058 -5.7609 4.6322 23 7 -0.8325 -5.4281 3.7510 24 1 -0.0775 -4.8401 3.9090 25 6 2.4551 -6.1298 -0.1215 26 6 2.6566 -6.7379 -1.3464 27 6 3.5511 -7.7858 -1.4590 28 6 4.2447 -8.2250 -0.3468 29 6 4.0442 -7.6160 0.8778 30 6 3.1480 -6.5695 0.9909 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5570 -0.8897 33 1 0.6240 -2.5567 0.8903 34 1 2.8713 -3.6039 0.8922 35 1 2.8726 -3.6046 -0.8878 36 1 1.0249 -4.6468 2.0469 37 1 -2.7775 -7.3792 2.0305 38 1 -4.7336 -7.3141 6.5313 39 1 2.1152 -6.3943 -2.2155 40 1 3.7083 -8.2613 -2.4159 41 1 4.9403 -9.0466 -0.4338 42 1 4.5858 -7.9594 1.7468 43 1 2.9906 -6.0944 1.9479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:32 Heat of formation + Delta-G solvation = -36.897766 kcal Electronic energy + Delta-G solvation = -28748.217708 eV Core-core repulsion = 24566.560783 eV Total energy + Delta-G solvation = -4181.656925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.00913 -40.17107 -39.93367 -38.67692 -36.32213 -35.94665 -33.42524 -32.59320 -31.88908 -30.96591 -30.73263 -30.46411 -26.78531 -25.37691 -24.21548 -23.40583 -22.51068 -21.30298 -21.08218 -20.75574 -20.18199 -19.05742 -18.24845 -17.05078 -16.99880 -16.48591 -16.40722 -16.03679 -15.51716 -15.47597 -15.17109 -14.57042 -14.52563 -14.33060 -13.96559 -13.82139 -13.57472 -13.36497 -13.24722 -13.01962 -12.67871 -12.21728 -11.87774 -11.82974 -11.51926 -11.26012 -11.12835 -11.05940 -11.04274 -10.80211 -10.64054 -10.29841 -9.96352 -9.92113 -9.73796 -9.57092 -9.28453 -9.03330 -8.84193 -8.56395 -8.46982 -6.11701 -4.15660 0.90103 1.18344 1.41182 1.47523 2.20626 2.70570 2.81444 3.10353 3.14954 3.24075 3.31442 3.33181 3.87768 4.09218 4.35628 4.47636 4.86967 4.93178 4.96422 5.03619 5.10908 5.17003 5.24335 5.36703 5.45830 5.54093 5.66040 5.72023 5.92523 5.99104 6.07871 6.12417 6.14395 6.36504 6.42376 6.47015 6.55325 6.57206 6.78059 6.81229 7.06434 7.25181 7.43747 7.50544 7.60747 7.67908 7.85898 8.06681 8.26395 8.91283 9.49810 10.98892 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.006684 B = 0.003612 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4188.085385 B = 7750.104075 C =11099.545498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.114 4.114 11 C 0.184 3.816 12 H 0.100 0.900 13 N -0.705 5.705 14 C 0.592 3.408 15 O -0.513 6.513 16 C -0.025 4.025 17 C -0.093 4.093 18 C -0.017 4.017 19 C 0.579 3.421 20 O -0.503 6.503 21 O -0.501 6.501 22 N -0.199 5.199 23 N -0.354 5.354 24 H 0.454 0.546 25 C -0.082 4.082 26 C -0.104 4.104 27 C -0.120 4.120 28 C -0.128 4.128 29 C -0.123 4.123 30 C -0.108 4.108 31 H 0.261 0.739 32 H 0.018 0.982 33 H 0.016 0.984 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.397 0.603 37 H 0.179 0.821 38 H 0.416 0.584 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -15.759 7.939 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.151 4.151 11 C 0.080 3.920 12 H 0.118 0.882 13 N -0.355 5.355 14 C 0.375 3.625 15 O -0.386 6.386 16 C -0.151 4.151 17 C -0.121 4.121 18 C -0.173 4.173 19 C 0.420 3.580 20 O -0.389 6.389 21 O -0.311 6.311 22 N -0.040 5.040 23 N -0.076 5.076 24 H 0.301 0.699 25 C -0.083 4.083 26 C -0.123 4.123 27 C -0.138 4.138 28 C -0.146 4.146 29 C -0.141 4.141 30 C -0.127 4.127 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.231 0.769 37 H 0.197 0.803 38 H 0.275 0.725 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.565 -15.603 7.782 17.506 hybrid contribution 0.318 0.978 0.081 1.031 sum 1.883 -14.625 7.863 16.711 Atomic orbital electron populations 1.69954 1.06043 1.26780 1.50295 1.25007 0.94812 0.99275 0.95141 0.86616 0.79816 0.83483 0.78227 1.20598 1.21219 1.19872 1.21195 0.93017 0.90902 1.51275 0.92620 1.19108 0.93669 0.90977 0.97550 1.22012 0.99179 0.91914 1.02039 1.20229 0.91726 0.93572 0.86480 0.88224 1.45880 1.27014 1.48095 1.14519 1.16819 0.80173 0.79830 0.85646 1.90858 1.67822 1.46067 1.33898 1.21599 1.01100 1.03760 0.88666 1.21820 0.95016 1.00401 0.94857 1.20524 0.98284 1.04949 0.93496 1.19104 0.82060 0.77132 0.79733 1.90945 1.45427 1.34920 1.67589 1.84635 1.51816 1.69887 1.24791 1.73683 0.99727 1.12300 1.18296 1.43896 1.22183 1.35603 1.05920 0.69935 1.20333 0.97363 0.96888 0.93761 1.21039 0.98159 0.95749 0.97312 1.21100 0.96902 0.97234 0.98547 1.21083 1.00181 1.00206 0.93119 1.21073 0.98706 0.96801 0.97532 1.20874 0.96490 0.97125 0.98177 0.92883 0.96366 0.96543 0.92432 0.91052 0.76914 0.80335 0.72527 0.85821 0.86228 0.86509 0.86472 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.53 -13.72 9.11 -34.44 -0.31 -14.03 16 8 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.02 0.55 4.86 -27.88 -0.14 0.41 16 10 C -0.11 -1.98 4.67 -26.73 -0.12 -2.11 16 11 C 0.18 2.81 2.17 -69.08 -0.15 2.66 16 12 H 0.10 1.71 7.44 -51.93 -0.39 1.33 16 13 N -0.71 -9.55 3.77 -56.08 -0.21 -9.76 16 14 C 0.59 8.73 7.76 -12.62 -0.10 8.63 16 15 O -0.51 -9.22 16.56 5.26 0.09 -9.13 16 16 C -0.03 -0.32 7.10 -82.47 -0.59 -0.91 16 17 C -0.09 -1.21 10.55 -39.00 -0.41 -1.62 16 18 C -0.02 -0.21 7.13 -82.93 -0.59 -0.80 16 19 C 0.58 6.82 8.34 34.56 0.29 7.10 16 20 O -0.50 -6.94 17.70 -19.25 -0.34 -7.28 16 21 O -0.50 -4.41 13.44 -40.56 -0.55 -4.95 16 22 N -0.20 -2.40 12.22 33.32 0.41 -2.00 16 23 N -0.35 -3.76 6.84 33.26 0.23 -3.54 16 24 H 0.45 3.41 8.19 -190.46 -1.56 1.85 16 25 C -0.08 -1.15 4.91 -104.62 -0.51 -1.67 16 26 C -0.10 -1.40 9.67 -39.59 -0.38 -1.78 16 27 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 28 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 29 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 30 C -0.11 -1.36 9.32 -39.58 -0.37 -1.73 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.38 7.75 -51.93 -0.40 -0.02 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.40 4.41 7.76 -40.82 -0.32 4.09 16 37 H 0.18 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.42 1.47 9.11 45.56 0.42 1.88 16 39 H 0.12 1.57 8.04 -52.49 -0.42 1.15 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 1.26 7.72 -52.49 -0.41 0.85 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -34.65 384.57 -9.12 -43.77 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.58 Total: 6.02 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -4.68 Total: -9.76 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 1.16 Total: -40.11 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.80 Total: -21.37 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.65 -9.12 -43.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.875 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds