Wall clock time and date at job start Wed Apr 1 2020 02:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99895 * 2 1 4 4 H 1.48493 * 109.47118 * 269.99911 * 3 2 1 5 5 H 1.48501 * 109.47097 * 29.99739 * 3 2 1 6 6 H 1.48498 * 109.47048 * 149.99594 * 3 2 1 7 7 C 1.37870 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00640 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99905 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46905 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46745 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47697 * 54.99829 * 11 10 9 13 13 N 1.46500 * 109.47369 * 294.99740 * 11 10 9 14 14 C 1.34770 * 120.00240 * 154.99867 * 13 11 10 15 15 O 1.21621 * 120.00060 * 0.02562 * 14 13 11 16 16 C 1.47215 * 119.99914 * 180.02562 * 14 13 11 17 17 C 1.37013 * 126.64059 * 180.02562 * 16 14 13 18 18 C 1.40957 * 105.46716 * 179.97438 * 17 16 14 19 19 C 1.47629 * 126.27812 * 179.97438 * 18 17 16 20 20 O 1.21483 * 119.99999 * 359.97438 * 19 18 17 21 21 O 1.34726 * 119.99956 * 180.02562 * 19 18 17 22 22 N 1.31997 * 107.44106 * 0.02562 * 18 17 16 23 23 N 1.28458 * 110.49196 * 359.73917 * 22 18 17 24 24 H 0.96990 * 125.06228 * 180.25758 * 23 22 18 25 25 C 1.50703 * 109.47337 * 174.99526 * 11 10 9 26 26 C 1.38235 * 120.00292 * 260.00106 * 25 11 10 27 27 C 1.38230 * 119.99899 * 179.97438 * 26 25 11 28 28 C 1.38235 * 120.00326 * 359.95697 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99503 * 79.97399 * 25 11 10 31 31 H 0.97001 * 120.00122 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.46715 * 60.00169 * 9 7 2 33 33 H 1.09003 * 109.46892 * 299.99900 * 9 7 2 34 34 H 1.08995 * 109.47486 * 60.00408 * 10 9 7 35 35 H 1.09003 * 109.47073 * 299.99555 * 10 9 7 36 36 H 0.96997 * 119.99726 * 335.00257 * 13 11 10 37 37 H 1.07998 * 127.26745 * 359.93958 * 17 16 14 38 38 H 0.96692 * 116.99808 * 180.02562 * 21 19 18 39 39 H 1.08001 * 119.99730 * 359.97438 * 26 25 11 40 40 H 1.08000 * 120.00376 * 179.97438 * 27 26 25 41 41 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 42 42 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 43 43 H 1.07997 * 120.00455 * 0.02562 * 30 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9870 0.0012 12 1 0.7891 -5.0072 -0.8414 13 7 0.7293 -5.1180 1.2522 14 6 -0.3723 -5.8929 1.2989 15 8 -0.7428 -6.4839 0.3025 16 6 -1.1273 -6.0240 2.5559 17 6 -2.2586 -6.7706 2.7562 18 6 -2.6026 -6.5761 4.1092 19 6 -3.7553 -7.1734 4.8120 20 8 -4.5142 -7.9114 4.2160 21 8 -3.9662 -6.8993 6.1141 22 7 -1.7058 -5.7609 4.6322 23 7 -0.8325 -5.4281 3.7510 24 1 -0.0775 -4.8401 3.9090 25 6 2.4551 -6.1298 -0.1215 26 6 2.6566 -6.7379 -1.3464 27 6 3.5511 -7.7858 -1.4590 28 6 4.2447 -8.2250 -0.3468 29 6 4.0442 -7.6160 0.8778 30 6 3.1480 -6.5695 0.9909 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5570 -0.8897 33 1 0.6240 -2.5567 0.8903 34 1 2.8713 -3.6039 0.8922 35 1 2.8726 -3.6046 -0.8878 36 1 1.0249 -4.6468 2.0469 37 1 -2.7775 -7.3792 2.0305 38 1 -4.7336 -7.3141 6.5313 39 1 2.1152 -6.3943 -2.2155 40 1 3.7083 -8.2613 -2.4159 41 1 4.9403 -9.0466 -0.4338 42 1 4.5858 -7.9594 1.7468 43 1 2.9906 -6.0944 1.9479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:31 Heat of formation + Delta-G solvation = -60.223883 kcal Electronic energy + Delta-G solvation = -28749.229204 eV Core-core repulsion = 24566.560783 eV Total energy + Delta-G solvation = -4182.668421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.99712 -41.23332 -40.90324 -39.72956 -37.26985 -37.15262 -35.22288 -33.79013 -33.01225 -32.15095 -31.81891 -31.63096 -28.32739 -26.32127 -25.72019 -24.59346 -23.47501 -22.62485 -22.14833 -21.84656 -21.35811 -20.18245 -19.13890 -18.53920 -17.90805 -17.88913 -17.44034 -17.23561 -16.62626 -16.56793 -16.40190 -16.11745 -15.56752 -15.42661 -15.08240 -14.95436 -14.65443 -14.56365 -14.41429 -14.21577 -13.94377 -13.79039 -13.38706 -12.88169 -12.65860 -12.57524 -12.52779 -12.46527 -12.15826 -12.07366 -11.91374 -11.79951 -11.46552 -11.36769 -11.21504 -10.88484 -10.64749 -10.55039 -10.24619 -9.76886 -9.58345 -8.18854 -6.29353 -0.10450 0.16939 0.45509 0.54984 1.32998 1.41157 1.42378 1.52320 1.69511 1.82761 2.02485 2.13189 2.41239 2.92653 3.12913 3.15558 3.43676 3.77641 3.93779 4.01072 4.12812 4.16593 4.23295 4.32350 4.34650 4.48139 4.65217 4.66827 4.74696 4.91177 4.97433 5.09205 5.14566 5.17914 5.24198 5.38354 5.52800 5.56668 5.60587 5.65055 5.68020 5.79263 5.85685 6.15280 6.22862 6.26820 6.39673 6.88290 6.91431 6.93105 7.40532 8.91853 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.006684 B = 0.003612 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4188.085385 B = 7750.104075 C =11099.545498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.096 4.096 11 C 0.195 3.805 12 H 0.072 0.928 13 N -0.696 5.696 14 C 0.594 3.406 15 O -0.550 6.550 16 C -0.029 4.029 17 C -0.100 4.100 18 C -0.028 4.028 19 C 0.586 3.414 20 O -0.529 6.529 21 O -0.493 6.493 22 N -0.194 5.194 23 N -0.335 5.335 24 H 0.467 0.533 25 C -0.100 4.100 26 C -0.126 4.126 27 C -0.125 4.125 28 C -0.127 4.127 29 C -0.125 4.125 30 C -0.116 4.116 31 H 0.261 0.739 32 H -0.019 1.019 33 H 0.007 0.993 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.410 0.590 37 H 0.178 0.822 38 H 0.439 0.561 39 H 0.118 0.882 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -16.305 9.621 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.576 4.576 8 H 0.081 0.919 9 C -0.008 4.008 10 C -0.133 4.133 11 C 0.091 3.909 12 H 0.090 0.910 13 N -0.347 5.347 14 C 0.379 3.621 15 O -0.427 6.427 16 C -0.156 4.156 17 C -0.128 4.128 18 C -0.183 4.183 19 C 0.428 3.572 20 O -0.417 6.417 21 O -0.307 6.307 22 N -0.036 5.036 23 N -0.060 5.060 24 H 0.317 0.683 25 C -0.101 4.101 26 C -0.145 4.145 27 C -0.143 4.143 28 C -0.145 4.145 29 C -0.143 4.143 30 C -0.135 4.135 31 H 0.070 0.930 32 H 0.000 1.000 33 H 0.025 0.975 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.246 0.754 37 H 0.195 0.805 38 H 0.302 0.698 39 H 0.136 0.864 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.653 -16.135 9.516 19.085 hybrid contribution -0.314 1.112 -0.412 1.227 sum 3.339 -15.022 9.104 17.880 Atomic orbital electron populations 1.70090 1.07705 1.27552 1.51789 1.25870 0.95570 1.03018 0.94954 0.85571 0.78922 0.79075 0.78229 1.20417 1.21176 1.18401 1.21672 0.93594 0.92151 1.50185 0.91939 1.18978 0.94076 0.92435 0.95273 1.21738 0.97941 0.90940 1.02716 1.19858 0.91403 0.93372 0.86269 0.90999 1.45756 1.26616 1.47787 1.14512 1.16979 0.80054 0.79257 0.85793 1.90837 1.68779 1.47668 1.35385 1.21229 1.01149 1.04616 0.88565 1.21928 0.95133 1.00415 0.95344 1.20677 0.98893 1.05273 0.93431 1.18940 0.81403 0.76494 0.80375 1.90937 1.46245 1.36132 1.68371 1.84584 1.53130 1.69733 1.23214 1.73668 0.99714 1.12007 1.18253 1.43905 1.22172 1.35006 1.04894 0.68275 1.20184 0.97986 0.97110 0.94824 1.21195 0.99193 0.96919 0.97177 1.21385 0.96289 0.96587 1.00035 1.21489 0.99887 1.00461 0.92633 1.21439 0.98155 0.96026 0.98700 1.21099 0.96526 0.97664 0.98162 0.93003 1.00029 0.97464 0.90604 0.91407 0.75386 0.80473 0.69806 0.86431 0.84202 0.83658 0.83793 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.37 13.29 21.44 0.28 -54.09 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 42.25 29.54 68.60 2.03 44.27 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.54 -28.18 9.11 25.60 0.23 -27.94 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.03 1.39 4.86 29.85 0.15 1.54 16 10 C -0.10 -3.36 4.67 30.59 0.14 -3.21 16 11 C 0.20 6.12 2.17 44.25 0.10 6.22 16 12 H 0.07 2.65 7.44 -2.39 -0.02 2.64 16 13 N -0.70 -18.99 3.77 -449.58 -1.69 -20.68 16 14 C 0.59 17.90 7.76 86.60 0.67 18.57 16 15 O -0.55 -20.63 16.56 -4.10 -0.07 -20.70 16 16 C -0.03 -0.74 7.10 40.45 0.29 -0.45 16 17 C -0.10 -2.62 10.55 22.65 0.24 -2.38 16 18 C -0.03 -0.68 7.13 42.27 0.30 -0.38 16 19 C 0.59 13.29 8.34 70.30 0.59 13.87 16 20 O -0.53 -14.42 17.70 19.89 0.35 -14.06 16 21 O -0.49 -7.80 13.44 -56.36 -0.76 -8.56 16 22 N -0.19 -4.45 12.22 -48.49 -0.59 -5.04 16 23 N -0.34 -6.76 6.84 -48.69 -0.33 -7.09 16 24 H 0.47 6.30 8.19 -220.01 -1.80 4.50 16 25 C -0.10 -2.77 4.91 -19.87 -0.10 -2.87 16 26 C -0.13 -3.41 9.67 22.27 0.22 -3.20 16 27 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 28 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 29 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 30 C -0.12 -2.71 9.32 22.27 0.21 -2.50 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16 32 H -0.02 -1.02 8.14 -2.39 -0.02 -1.03 16 33 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.41 8.81 7.76 -92.71 -0.72 8.09 16 37 H 0.18 4.61 8.06 -2.91 -0.02 4.59 16 38 H 0.44 2.18 9.11 -74.06 -0.67 1.51 16 39 H 0.12 3.17 8.04 -2.91 -0.02 3.14 16 40 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 42 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 43 H 0.13 2.52 7.72 -2.91 -0.02 2.50 16 Total: -1.00 -75.45 384.57 1.28 -74.18 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -2.10 Total: 20.88 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 4.16 Total: -9.11 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -2.33 Total: -86.90 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.47 Total: -43.32 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -75.45 1.28 -74.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.952 kcal (2) G-P(sol) polarization free energy of solvation -75.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds