Wall clock time and date at job start Wed Apr 1 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48496 * 109.47248 * 270.00215 * 3 2 1 5 5 H 1.48507 * 109.47097 * 29.99730 * 3 2 1 6 6 H 1.48500 * 109.47098 * 149.99794 * 3 2 1 7 7 C 1.38811 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99235 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99880 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47002 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.85125 * 316.19017 * 11 10 9 13 13 C 1.54048 * 113.69681 * 87.46732 * 11 10 9 14 14 C 1.53779 * 86.98828 * 139.98934 * 13 11 10 15 15 H 1.09004 * 113.61498 * 219.97515 * 14 13 11 16 16 N 1.46499 * 113.61441 * 89.16190 * 14 13 11 17 17 C 1.34777 * 120.00199 * 105.86649 * 16 14 13 18 18 O 1.21513 * 119.99898 * 359.97438 * 17 16 14 19 19 C 1.48150 * 119.99679 * 180.27153 * 17 16 14 20 20 C 1.39834 * 120.92631 * 359.72369 * 19 17 16 21 21 C 1.38127 * 119.00157 * 179.97438 * 20 19 17 22 22 N 1.31824 * 120.90283 * 0.02562 * 21 20 19 23 23 C 1.31803 * 122.04409 * 359.97438 * 22 21 20 24 24 C 1.38167 * 120.89516 * 359.73355 * 23 22 21 25 25 C 1.50707 * 120.49850 * 180.28575 * 24 23 22 26 26 F 1.39893 * 109.47075 * 0.23473 * 25 24 23 27 27 F 1.39907 * 109.46647 * 120.23426 * 25 24 23 28 28 F 1.39899 * 109.47017 * 240.23105 * 25 24 23 29 29 C 1.53776 * 87.17037 * 334.56783 * 14 13 11 30 30 H 0.96999 * 119.99855 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99954 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47849 * 59.99846 * 10 9 7 33 33 H 1.09000 * 109.47046 * 299.99532 * 10 9 7 34 34 H 1.08999 * 113.61805 * 25.47963 * 13 11 10 35 35 H 1.09007 * 113.69123 * 254.50679 * 13 11 10 36 36 H 0.97001 * 120.00074 * 285.85752 * 16 14 13 37 37 H 1.08001 * 120.49773 * 359.97438 * 20 19 17 38 38 H 1.08004 * 119.54538 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.55105 * 180.02562 * 23 22 21 40 40 H 1.09010 * 113.61247 * 140.02218 * 29 14 13 41 41 H 1.08993 * 113.61858 * 270.92437 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0639 -4.8196 -0.0022 12 1 0.2376 -4.6705 0.6928 13 6 0.6147 -5.2494 -1.4117 14 6 0.7038 -6.7001 -0.9095 15 1 1.1211 -7.3910 -1.6421 16 7 -0.5391 -7.1905 -0.3088 17 6 -1.3123 -8.0666 -0.9803 18 8 -0.9788 -8.4494 -2.0843 19 6 -2.5723 -8.5579 -0.3753 20 6 -2.9748 -8.1299 0.8936 21 6 -4.1572 -8.6130 1.4195 22 7 -4.9009 -9.4653 0.7426 23 6 -4.5584 -9.8941 -0.4558 24 6 -3.3948 -9.4577 -1.0596 25 6 -3.0150 -9.9488 -2.4329 26 9 -3.9935 -10.8333 -2.8989 27 9 -2.9160 -8.8605 -3.3064 28 9 -1.7830 -10.6083 -2.3680 29 6 1.7304 -6.2001 0.1204 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6841 -3.7149 0.8888 33 1 2.6854 -3.7141 -0.8912 34 1 1.3381 -5.0122 -2.1918 35 1 -0.3985 -4.9358 -1.6632 36 1 -0.8055 -6.8848 0.5724 37 1 -2.3703 -7.4321 1.4540 38 1 -4.4767 -8.2880 2.3987 39 1 -5.1983 -10.5924 -0.9747 40 1 1.6174 -6.6535 1.1052 41 1 2.7583 -6.2223 -0.2414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675813674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:22 Heat of formation + Delta-G solvation = -107.501206 kcal Electronic energy + Delta-G solvation = -29708.921155 eV Core-core repulsion = 24982.345895 eV Total energy + Delta-G solvation = -4726.575260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.22291 -47.80439 -47.55758 -41.30512 -40.01722 -38.39618 -34.72861 -33.89768 -33.34541 -32.24297 -30.84602 -27.34214 -26.59436 -25.61030 -25.34901 -23.58554 -22.95233 -21.67482 -21.41722 -19.38995 -19.08056 -18.52060 -18.50963 -18.03111 -17.15543 -16.94178 -16.01035 -15.85032 -15.57522 -15.32123 -14.90291 -14.57901 -14.50827 -14.43896 -14.35166 -14.13493 -13.97117 -13.92291 -13.73416 -13.58364 -13.38210 -13.32231 -12.84332 -12.46243 -12.22508 -12.20732 -11.75442 -11.08520 -10.86505 -10.78225 -10.67367 -10.51135 -10.41971 -10.16124 -10.11624 -10.06139 -9.89526 -9.66548 -9.22284 -8.87906 -6.93463 -5.78740 -3.07082 -0.13361 0.21108 2.33271 2.38597 2.60630 3.07324 3.41970 3.42748 3.47121 3.48640 3.68150 3.77646 3.92403 4.05318 4.27498 4.45433 4.50886 4.54371 4.56909 4.72378 4.89565 5.00700 5.01075 5.04839 5.15623 5.55364 5.58686 5.73357 5.74928 5.85353 5.88775 6.01720 6.11809 6.20396 6.34533 6.50257 6.72753 6.86617 7.07776 7.11185 7.67878 7.74395 8.40505 9.51578 10.10095 10.44339 11.44217 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.002275 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.774971 B =12303.134475 C =12762.130307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.114 4.114 12 H 0.087 0.913 13 C -0.137 4.137 14 C 0.115 3.885 15 H 0.103 0.897 16 N -0.693 5.693 17 C 0.548 3.452 18 O -0.507 6.507 19 C -0.034 4.034 20 C -0.143 4.143 21 C 0.132 3.868 22 N -0.466 5.466 23 C 0.148 3.852 24 C -0.192 4.192 25 C 0.523 3.477 26 F -0.182 7.182 27 F -0.160 7.160 28 F -0.162 7.162 29 C -0.136 4.136 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.402 0.598 37 H 0.154 0.846 38 H 0.176 0.824 39 H 0.178 0.822 40 H 0.070 0.930 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.092 -23.998 2.079 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.133 4.133 12 H 0.106 0.894 13 C -0.176 4.176 14 C 0.010 3.990 15 H 0.121 0.879 16 N -0.344 5.344 17 C 0.333 3.667 18 O -0.382 6.382 19 C -0.046 4.046 20 C -0.164 4.164 21 C -0.025 4.025 22 N -0.174 5.174 23 C -0.009 4.009 24 C -0.197 4.197 25 C 0.467 3.533 26 F -0.164 7.164 27 F -0.141 7.141 28 F -0.144 7.144 29 C -0.175 4.175 30 H 0.065 0.935 31 H 0.216 0.784 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.238 0.762 37 H 0.172 0.828 38 H 0.193 0.807 39 H 0.194 0.806 40 H 0.088 0.912 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.440 -24.451 1.614 25.917 hybrid contribution 0.803 1.504 -0.076 1.706 sum -7.637 -22.947 1.537 24.234 Atomic orbital electron populations 1.69659 1.05113 1.25630 1.57894 1.24742 0.95534 0.97707 1.03083 0.86191 0.78637 0.83830 0.77546 1.21715 1.21773 1.20774 1.19238 0.91031 0.84247 1.42537 0.91230 1.42341 1.05819 1.00001 1.89442 1.20629 0.92971 0.85167 0.97752 1.22834 0.99120 0.94312 0.97026 0.89443 1.23465 1.02708 0.93613 0.97807 1.22054 0.83706 0.96386 0.96853 0.87853 1.45499 1.23340 1.44502 1.21072 1.18024 0.83235 0.79869 0.85595 1.90895 1.71742 1.56970 1.18570 1.20276 0.94731 0.94907 0.94651 1.22478 0.98711 1.00682 0.94494 1.23149 0.89457 0.90347 0.99562 1.67808 1.32044 1.10651 1.06943 1.22816 0.91948 0.95426 0.90676 1.21253 0.99524 1.02771 0.96123 1.17677 0.74896 0.75689 0.85000 1.93158 1.63002 1.70065 1.90157 1.93270 1.95786 1.53966 1.71126 1.93247 1.43475 1.81180 1.96455 1.23315 0.98932 0.96497 0.98729 0.93541 0.78356 0.96363 0.96149 0.88812 0.91180 0.76214 0.82834 0.80687 0.80554 0.91150 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.15 5.60 -59.91 -0.34 -18.48 16 10 C 0.16 3.09 6.10 -4.04 -0.02 3.07 16 11 C -0.11 -1.63 3.64 -89.66 -0.33 -1.96 16 12 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.14 -1.92 7.45 -25.78 -0.19 -2.11 16 14 C 0.11 1.32 4.30 -67.12 -0.29 1.03 16 15 H 0.10 1.27 7.50 -51.93 -0.39 0.88 16 16 N -0.69 -7.00 5.22 -53.87 -0.28 -7.28 16 17 C 0.55 6.49 7.63 -12.19 -0.09 6.39 16 18 O -0.51 -7.64 11.21 5.35 0.06 -7.58 16 19 C -0.03 -0.33 5.88 -104.65 -0.62 -0.95 16 20 C -0.14 -0.94 9.62 -39.03 -0.38 -1.31 16 21 C 0.13 0.81 11.17 -17.60 -0.20 0.62 16 22 N -0.47 -3.81 10.34 -13.30 -0.14 -3.95 16 23 C 0.15 1.22 10.59 -17.59 -0.19 1.03 16 24 C -0.19 -1.92 5.41 -104.06 -0.56 -2.48 16 25 C 0.52 6.09 2.78 36.01 0.10 6.19 16 26 F -0.18 -1.84 16.01 2.25 0.04 -1.80 16 27 F -0.16 -2.23 15.14 2.25 0.03 -2.20 16 28 F -0.16 -2.14 15.12 2.25 0.03 -2.11 16 29 C -0.14 -1.47 7.38 -25.92 -0.19 -1.66 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 31 H 0.38 9.96 7.67 -40.82 -0.31 9.65 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.40 7.86 -51.93 -0.41 -0.01 16 34 H 0.09 1.35 7.91 -51.93 -0.41 0.94 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.40 3.02 6.85 -40.82 -0.28 2.74 16 37 H 0.15 0.58 6.54 -52.49 -0.34 0.24 16 38 H 0.18 0.51 8.06 -52.48 -0.42 0.09 16 39 H 0.18 1.07 7.17 -52.49 -0.38 0.69 16 40 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -34.09 356.37 -7.32 -41.41 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.60 Total: 6.12 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -3.20 Total: 0.54 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.03 Total: -57.03 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.06 Total: -7.58 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.10 Total: -6.11 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.09 -7.32 -41.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675813674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.089 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds