Wall clock time and date at job start Wed Apr 1 2020 02:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38177 * 120.49803 * 2 1 4 4 N 1.31794 * 120.89610 * 180.02562 * 3 2 1 5 5 C 1.31827 * 122.05132 * 359.97059 * 4 3 2 6 6 C 1.38128 * 120.89145 * 359.74373 * 5 4 3 7 7 C 1.39791 * 120.50353 * 180.02562 * 2 1 3 8 8 C 1.48146 * 120.92460 * 359.95881 * 7 2 1 9 9 O 1.21516 * 120.00046 * 43.12340 * 8 7 2 10 10 N 1.34774 * 120.00462 * 223.12784 * 8 7 2 11 11 C 1.48145 * 127.84420 * 175.26857 * 10 8 7 12 12 C 1.54384 * 104.62019 * 219.60524 * 11 10 8 13 13 H 1.08998 * 110.34600 * 95.10616 * 12 11 10 14 14 C 1.52999 * 110.34233 * 217.26167 * 12 11 10 15 15 F 1.39899 * 109.47060 * 57.12150 * 14 12 11 16 16 F 1.39903 * 109.46780 * 297.12195 * 14 12 11 17 17 F 1.39905 * 109.47116 * 177.12162 * 14 12 11 18 18 C 1.54282 * 105.05139 * 336.18455 * 12 11 10 19 19 H 1.09003 * 110.34277 * 241.07995 * 18 12 11 20 20 N 1.46503 * 110.34753 * 118.81808 * 18 12 11 21 21 C 1.36937 * 120.00021 * 154.99472 * 20 18 12 22 22 H 1.08000 * 119.99920 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99398 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00373 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99548 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47067 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47224 * 120.00109 * 25 23 21 28 28 H 1.48500 * 109.46932 * 240.00139 * 25 23 21 29 29 C 1.48150 * 127.83643 * 355.28814 * 10 8 7 30 30 H 1.08991 * 109.47448 * 264.35005 * 1 2 3 31 31 H 1.08992 * 109.47056 * 24.35771 * 1 2 3 32 32 H 1.09001 * 109.46559 * 144.35329 * 1 2 3 33 33 H 1.08004 * 119.54831 * 0.02562 * 3 2 1 34 34 H 1.07996 * 119.55407 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.49834 * 180.28386 * 6 5 4 36 36 H 1.09000 * 110.40527 * 100.81334 * 11 10 8 37 37 H 1.09006 * 110.50368 * 338.44139 * 11 10 8 38 38 H 0.97001 * 119.99521 * 335.00056 * 20 18 12 39 39 H 0.97000 * 119.99480 * 179.97438 * 24 23 21 40 40 H 1.08994 * 110.40760 * 259.18245 * 29 10 8 41 41 H 1.09004 * 110.40666 * 21.49459 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5262 1.1998 -0.0005 5 6 4.2335 0.0873 -0.0005 6 6 3.6137 -1.1471 0.0054 7 6 2.2166 -1.2044 -0.0005 8 6 1.5080 -2.5055 -0.0002 9 8 0.5425 -2.6717 -0.7190 10 7 1.9343 -3.5048 0.7973 11 6 1.3070 -4.8304 1.0075 12 6 1.4699 -5.1034 2.5183 13 1 0.5729 -4.7987 3.0573 14 6 1.7584 -6.5859 2.7628 15 9 2.9027 -6.9618 2.0510 16 9 0.6689 -7.3503 2.3316 17 9 1.9675 -6.8011 4.1293 18 6 2.6749 -4.2436 2.9531 19 1 3.4724 -4.8775 3.3409 20 7 2.2644 -3.2648 3.9629 21 6 3.1841 -2.7649 4.8457 22 1 4.2123 -3.0919 4.7973 23 6 2.7949 -1.8379 5.8027 24 7 1.5417 -1.4397 5.8620 25 14 4.0497 -1.1554 7.0066 26 1 5.3783 -1.7593 6.7322 27 1 4.1340 0.3190 6.8510 28 1 3.6342 -1.4838 8.3939 29 6 3.1363 -3.5268 1.6631 30 1 -0.3634 -0.1012 1.0226 31 1 -0.3633 0.9361 -0.4238 32 1 -0.3632 -0.8351 -0.5989 33 1 1.6690 2.1264 0.0004 34 1 5.3121 0.1419 -0.0013 35 1 4.1995 -2.0545 0.0100 36 1 1.8250 -5.5925 0.4254 37 1 0.2511 -4.8001 0.7384 38 1 1.3410 -2.9709 4.0061 39 1 1.2698 -0.7922 6.5311 40 1 3.9399 -4.0854 1.1834 41 1 3.4618 -2.5110 1.8873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099248304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:07 Heat of formation + Delta-G solvation = -128.557235 kcal Electronic energy + Delta-G solvation = -31311.014494 eV Core-core repulsion = 26583.526176 eV Total energy + Delta-G solvation = -4727.488318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.97420 -47.48742 -47.38518 -40.74059 -39.31492 -37.66605 -34.21356 -33.41555 -32.74196 -31.55785 -30.57708 -27.79793 -27.46893 -26.03777 -24.61155 -23.85843 -22.42646 -22.12193 -20.45337 -19.86706 -18.39102 -18.17039 -18.07738 -17.29385 -16.76058 -16.65779 -16.11302 -15.31244 -15.06053 -14.94913 -14.66759 -14.36037 -14.28954 -14.15310 -13.87805 -13.76469 -13.70598 -13.55407 -13.45716 -13.38913 -13.35548 -13.17040 -12.63294 -12.36082 -12.16402 -11.95062 -11.75251 -11.56990 -11.38249 -11.01672 -10.95749 -10.93354 -10.24860 -10.18236 -9.93458 -9.66758 -9.36485 -9.24745 -8.86638 -8.70726 -7.24780 -5.97575 -3.30351 0.89595 1.13176 2.57618 2.84895 3.03674 3.32440 3.38455 3.40873 3.82577 3.89932 3.99681 4.13456 4.39411 4.43989 4.47021 4.76157 4.79477 4.86348 4.87435 5.02679 5.15991 5.23266 5.35483 5.40304 5.46308 5.55959 5.61437 5.70887 5.78700 5.82278 5.86119 5.92507 5.97382 6.12099 6.14563 6.34228 6.41058 6.65519 7.49685 7.52041 7.95555 8.08474 8.17040 9.30511 9.78315 10.13489 11.23710 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.007512 B = 0.005797 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3726.708954 B = 4828.649306 C = 7428.649601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.080 4.080 3 C 0.095 3.905 4 N -0.469 5.469 5 C 0.089 3.911 6 C -0.134 4.134 7 C -0.077 4.077 8 C 0.588 3.412 9 O -0.536 6.536 10 N -0.603 5.603 11 C 0.119 3.881 12 C -0.167 4.167 13 H 0.129 0.871 14 C 0.465 3.535 15 F -0.184 7.184 16 F -0.187 7.187 17 F -0.172 7.172 18 C 0.179 3.821 19 H 0.080 0.920 20 N -0.707 5.707 21 C -0.255 4.255 22 H 0.075 0.925 23 C -0.002 4.002 24 N -0.924 5.924 25 Si 0.908 3.092 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.289 1.289 29 C 0.063 3.937 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.140 0.860 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.387 0.613 39 H 0.258 0.742 40 H 0.070 0.930 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 -4.116 -11.649 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.082 4.082 3 C -0.062 4.062 4 N -0.178 5.178 5 C -0.068 4.068 6 C -0.154 4.154 7 C -0.088 4.088 8 C 0.378 3.622 9 O -0.414 6.414 10 N -0.335 5.335 11 C -0.004 4.004 12 C -0.189 4.189 13 H 0.147 0.853 14 C 0.410 3.590 15 F -0.165 7.165 16 F -0.168 7.168 17 F -0.153 7.153 18 C 0.066 3.934 19 H 0.098 0.902 20 N -0.347 5.347 21 C -0.385 4.385 22 H 0.093 0.907 23 C -0.199 4.199 24 N -0.570 5.570 25 Si 0.738 3.262 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.216 1.216 29 C -0.063 4.063 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.158 0.842 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.222 0.778 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.405 -3.297 -11.945 12.471 hybrid contribution 0.041 -0.597 0.993 1.160 sum 1.446 -3.894 -10.951 11.712 Atomic orbital electron populations 1.21024 0.89597 1.04263 1.03809 1.20948 0.98078 0.92422 0.96779 1.22641 0.89787 0.97193 0.96607 1.67499 1.08283 1.31821 1.10172 1.22649 1.00426 0.87222 0.96464 1.22357 0.93679 1.00328 0.99074 1.19975 0.93996 0.93255 1.01582 1.17748 0.83157 0.82298 0.79045 1.90717 1.27809 1.81787 1.41088 1.48682 1.27256 1.14116 1.43437 1.22140 1.00716 0.85198 0.92387 1.23914 1.05699 0.89539 0.99708 0.85254 1.20271 0.73906 0.90463 0.74370 1.93154 1.51768 1.93004 1.78584 1.93174 1.55094 1.78800 1.89764 1.93241 1.94694 1.95748 1.31655 1.21066 0.92299 0.90617 0.89411 0.90216 1.42410 1.10471 1.47537 1.34320 1.19225 0.91267 1.19433 1.08610 0.90672 1.24769 0.96313 0.99490 0.99324 1.69664 1.15212 1.35089 1.37061 0.86128 0.80408 0.78654 0.81015 1.20297 1.21678 1.21636 1.23919 0.86596 1.04221 0.91535 0.90374 0.91182 0.88679 0.82322 0.82300 0.84213 0.90031 0.88663 0.77805 0.93237 0.91145 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.57 36.01 0.34 -1.40 16 2 C -0.08 -1.18 5.93 -104.06 -0.62 -1.80 16 3 C 0.10 1.33 10.84 -17.59 -0.19 1.14 16 4 N -0.47 -6.93 10.33 -13.30 -0.14 -7.07 16 5 C 0.09 1.17 11.17 -17.59 -0.20 0.98 16 6 C -0.13 -1.81 7.92 -39.02 -0.31 -2.11 16 7 C -0.08 -1.19 5.45 -104.65 -0.57 -1.76 16 8 C 0.59 9.58 7.19 -12.19 -0.09 9.49 16 9 O -0.54 -9.65 14.94 5.35 0.08 -9.57 16 10 N -0.60 -9.02 3.32 -170.15 -0.56 -9.58 16 11 C 0.12 1.59 6.34 -2.41 -0.02 1.57 16 12 C -0.17 -2.41 2.83 -89.22 -0.25 -2.67 16 13 H 0.13 1.97 7.67 -51.93 -0.40 1.57 16 14 C 0.46 6.45 2.52 37.16 0.09 6.54 16 15 F -0.18 -2.43 16.05 2.25 0.04 -2.39 16 16 F -0.19 -2.49 17.14 2.25 0.04 -2.45 16 17 F -0.17 -2.76 17.00 2.25 0.04 -2.72 16 18 C 0.18 3.02 3.02 -66.40 -0.20 2.82 16 19 H 0.08 1.35 7.34 -51.93 -0.38 0.97 16 20 N -0.71 -15.55 5.12 -51.94 -0.27 -15.81 16 21 C -0.26 -6.36 9.96 -15.06 -0.15 -6.51 16 22 H 0.08 1.81 7.83 -52.49 -0.41 1.40 16 23 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 24 N -0.92 -26.08 13.06 55.49 0.72 -25.35 16 25 Si 0.91 21.16 29.55 -169.99 -5.02 16.13 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 C 0.06 0.93 5.29 -2.28 -0.01 0.92 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 32 H 0.09 1.41 5.67 -51.93 -0.29 1.11 16 33 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.14 1.58 6.72 -52.48 -0.35 1.23 16 36 H 0.08 0.96 7.27 -51.93 -0.38 0.58 16 37 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 38 H 0.39 9.31 7.56 -40.82 -0.31 9.00 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.67 5.96 -51.93 -0.31 1.36 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -29.89 354.06 -6.49 -36.38 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -4.49 Total: 10.02 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -2.26 Total: 7.08 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.24 Total: -57.81 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.11 Total: -7.56 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.89 -6.49 -36.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099248304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.182 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds