Wall clock time and date at job start Wed Apr 1 2020 02:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38177 * 120.49803 * 2 1 4 4 N 1.31794 * 120.89610 * 180.02562 * 3 2 1 5 5 C 1.31827 * 122.05132 * 359.97059 * 4 3 2 6 6 C 1.38128 * 120.89145 * 359.74373 * 5 4 3 7 7 C 1.39791 * 120.50353 * 180.02562 * 2 1 3 8 8 C 1.48146 * 120.92460 * 359.95881 * 7 2 1 9 9 O 1.21516 * 120.00046 * 43.12340 * 8 7 2 10 10 N 1.34774 * 120.00462 * 223.12784 * 8 7 2 11 11 C 1.48145 * 127.84420 * 175.26857 * 10 8 7 12 12 C 1.54384 * 104.62019 * 219.60524 * 11 10 8 13 13 H 1.08998 * 110.34600 * 95.10616 * 12 11 10 14 14 C 1.52999 * 110.34233 * 217.26167 * 12 11 10 15 15 F 1.39899 * 109.47060 * 57.12150 * 14 12 11 16 16 F 1.39903 * 109.46780 * 297.12195 * 14 12 11 17 17 F 1.39905 * 109.47116 * 177.12162 * 14 12 11 18 18 C 1.54282 * 105.05139 * 336.18455 * 12 11 10 19 19 H 1.09003 * 110.34277 * 241.07995 * 18 12 11 20 20 N 1.46503 * 110.34753 * 118.81808 * 18 12 11 21 21 C 1.36937 * 120.00021 * 154.99472 * 20 18 12 22 22 H 1.08000 * 119.99920 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99398 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00373 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99548 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47067 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47224 * 120.00109 * 25 23 21 28 28 H 1.48500 * 109.46932 * 240.00139 * 25 23 21 29 29 C 1.48150 * 127.83643 * 355.28814 * 10 8 7 30 30 H 1.08991 * 109.47448 * 264.35005 * 1 2 3 31 31 H 1.08992 * 109.47056 * 24.35771 * 1 2 3 32 32 H 1.09001 * 109.46559 * 144.35329 * 1 2 3 33 33 H 1.08004 * 119.54831 * 0.02562 * 3 2 1 34 34 H 1.07996 * 119.55407 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.49834 * 180.28386 * 6 5 4 36 36 H 1.09000 * 110.40527 * 100.81334 * 11 10 8 37 37 H 1.09006 * 110.50368 * 338.44139 * 11 10 8 38 38 H 0.97001 * 119.99521 * 335.00056 * 20 18 12 39 39 H 0.97000 * 119.99480 * 179.97438 * 24 23 21 40 40 H 1.08994 * 110.40760 * 259.18245 * 29 10 8 41 41 H 1.09004 * 110.40666 * 21.49459 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5262 1.1998 -0.0005 5 6 4.2335 0.0873 -0.0005 6 6 3.6137 -1.1471 0.0054 7 6 2.2166 -1.2044 -0.0005 8 6 1.5080 -2.5055 -0.0002 9 8 0.5425 -2.6717 -0.7190 10 7 1.9343 -3.5048 0.7973 11 6 1.3070 -4.8304 1.0075 12 6 1.4699 -5.1034 2.5183 13 1 0.5729 -4.7987 3.0573 14 6 1.7584 -6.5859 2.7628 15 9 2.9027 -6.9618 2.0510 16 9 0.6689 -7.3503 2.3316 17 9 1.9675 -6.8011 4.1293 18 6 2.6749 -4.2436 2.9531 19 1 3.4724 -4.8775 3.3409 20 7 2.2644 -3.2648 3.9629 21 6 3.1841 -2.7649 4.8457 22 1 4.2123 -3.0919 4.7973 23 6 2.7949 -1.8379 5.8027 24 7 1.5417 -1.4397 5.8620 25 14 4.0497 -1.1554 7.0066 26 1 5.3783 -1.7593 6.7322 27 1 4.1340 0.3190 6.8510 28 1 3.6342 -1.4838 8.3939 29 6 3.1363 -3.5268 1.6631 30 1 -0.3634 -0.1012 1.0226 31 1 -0.3633 0.9361 -0.4238 32 1 -0.3632 -0.8351 -0.5989 33 1 1.6690 2.1264 0.0004 34 1 5.3121 0.1419 -0.0013 35 1 4.1995 -2.0545 0.0100 36 1 1.8250 -5.5925 0.4254 37 1 0.2511 -4.8001 0.7384 38 1 1.3410 -2.9709 4.0061 39 1 1.2698 -0.7922 6.5311 40 1 3.9399 -4.0854 1.1834 41 1 3.4618 -2.5110 1.8873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099248304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:06 Heat of formation + Delta-G solvation = -146.773337 kcal Electronic energy + Delta-G solvation = -31311.804403 eV Core-core repulsion = 26583.526176 eV Total energy + Delta-G solvation = -4728.278227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.125 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -51.12164 -48.59479 -48.57496 -41.88428 -40.48191 -38.97001 -35.88665 -34.51950 -34.00204 -32.94934 -32.02715 -29.22764 -28.56628 -27.17552 -26.15430 -25.18959 -23.69157 -23.26881 -21.75020 -21.03739 -19.66420 -19.49582 -19.25566 -18.68495 -18.12038 -17.79939 -17.35955 -16.66055 -16.38282 -16.14448 -15.76990 -15.70437 -15.48626 -15.30367 -15.23677 -15.15024 -15.00165 -14.83988 -14.72508 -14.65100 -14.41836 -14.34586 -13.73881 -13.61924 -13.41997 -13.22214 -13.06951 -12.93747 -12.69738 -12.58539 -12.51927 -12.26477 -12.05420 -11.78111 -11.45144 -11.11722 -10.78201 -10.42203 -10.03240 -9.90700 -9.06699 -7.96808 -5.26991 -0.22520 0.08741 1.36601 1.47823 1.49845 1.57818 1.66304 1.86840 2.52113 2.73130 2.75902 2.82138 2.96706 3.25125 3.35497 3.49237 3.63562 3.69134 3.78863 3.81974 3.85738 3.95006 4.00843 4.17507 4.39911 4.45326 4.47013 4.53140 4.66183 4.69277 4.71092 4.76957 4.83937 4.87066 5.04850 5.16173 5.25090 5.53561 5.62713 6.21553 6.27853 6.85323 6.90496 7.30971 7.97235 8.21211 9.25695 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.007512 B = 0.005797 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3726.708954 B = 4828.649306 C = 7428.649601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.098 4.098 3 C 0.089 3.911 4 N -0.488 5.488 5 C 0.085 3.915 6 C -0.133 4.133 7 C -0.100 4.100 8 C 0.586 3.414 9 O -0.560 6.560 10 N -0.603 5.603 11 C 0.121 3.879 12 C -0.158 4.158 13 H 0.118 0.882 14 C 0.474 3.526 15 F -0.175 7.175 16 F -0.181 7.181 17 F -0.185 7.185 18 C 0.173 3.827 19 H 0.085 0.915 20 N -0.720 5.720 21 C -0.237 4.237 22 H 0.086 0.914 23 C -0.065 4.065 24 N -0.963 5.963 25 Si 0.962 3.038 26 H -0.260 1.260 27 H -0.300 1.300 28 H -0.299 1.299 29 C 0.073 3.927 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.183 0.817 34 H 0.191 0.809 35 H 0.162 0.838 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.374 0.626 39 H 0.249 0.751 40 H 0.110 0.890 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.142 -4.924 -12.740 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 C -0.067 4.067 4 N -0.197 5.197 5 C -0.071 4.071 6 C -0.153 4.153 7 C -0.111 4.111 8 C 0.376 3.624 9 O -0.440 6.440 10 N -0.334 5.334 11 C -0.002 4.002 12 C -0.180 4.180 13 H 0.136 0.864 14 C 0.419 3.581 15 F -0.156 7.156 16 F -0.162 7.162 17 F -0.167 7.167 18 C 0.062 3.938 19 H 0.103 0.897 20 N -0.359 5.359 21 C -0.369 4.369 22 H 0.104 0.896 23 C -0.258 4.258 24 N -0.613 5.613 25 Si 0.792 3.208 26 H -0.184 1.184 27 H -0.227 1.227 28 H -0.226 1.226 29 C -0.052 4.052 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.200 0.800 34 H 0.208 0.792 35 H 0.180 0.820 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.206 0.794 39 H 0.058 0.942 40 H 0.127 0.873 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.226 -4.158 -13.068 14.088 hybrid contribution -0.485 -0.440 1.262 1.422 sum 2.741 -4.598 -11.806 12.963 Atomic orbital electron populations 1.20954 0.89164 1.05116 1.02776 1.21183 0.98678 0.92810 0.97432 1.23022 0.89869 0.97851 0.96005 1.67562 1.08656 1.32675 1.10762 1.23210 1.01890 0.86739 0.95254 1.22611 0.92986 1.01454 0.98221 1.20167 0.95127 0.93038 1.02789 1.17932 0.82884 0.82699 0.78919 1.90699 1.28816 1.82195 1.42240 1.48706 1.27357 1.14414 1.42950 1.22259 1.01236 0.85071 0.91589 1.23730 1.04190 0.89641 1.00407 0.86366 1.20039 0.74234 0.90006 0.73833 1.93174 1.51295 1.92892 1.78242 1.93190 1.54878 1.78557 1.89606 1.93221 1.94802 1.95788 1.32853 1.21276 0.93321 0.90022 0.89193 0.89679 1.42522 1.09432 1.48558 1.35356 1.19605 0.91990 1.17606 1.07657 0.89599 1.25440 0.97639 1.01064 1.01628 1.69804 1.16954 1.36465 1.38091 0.85244 0.79435 0.77385 0.78738 1.18396 1.22746 1.22637 1.23771 0.87300 1.03558 0.90579 0.91772 0.88417 0.90217 0.80046 0.79238 0.82037 0.87514 0.88600 0.79388 0.94208 0.87255 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.33 9.57 71.24 0.68 -2.64 16 2 C -0.10 -2.88 5.93 -19.50 -0.12 -3.00 16 3 C 0.09 2.41 10.84 84.68 0.92 3.33 16 4 N -0.49 -13.70 10.33 -196.00 -2.03 -15.73 16 5 C 0.09 2.08 11.17 84.67 0.95 3.02 16 6 C -0.13 -3.32 7.92 22.63 0.18 -3.14 16 7 C -0.10 -3.02 5.45 -19.88 -0.11 -3.13 16 8 C 0.59 18.63 7.19 86.88 0.62 19.26 16 9 O -0.56 -20.05 14.94 -3.77 -0.06 -20.11 16 10 N -0.60 -17.00 3.32 -810.54 -2.69 -19.69 16 11 C 0.12 2.98 6.34 86.53 0.55 3.53 16 12 C -0.16 -4.33 2.83 -9.89 -0.03 -4.35 16 13 H 0.12 3.57 7.67 -2.39 -0.02 3.55 16 14 C 0.47 12.16 2.52 71.98 0.18 12.34 16 15 F -0.17 -4.06 16.05 44.97 0.72 -3.34 16 16 F -0.18 -4.45 17.14 44.97 0.77 -3.68 16 17 F -0.19 -5.66 17.00 44.97 0.76 -4.90 16 18 C 0.17 5.51 3.02 45.98 0.14 5.65 16 19 H 0.09 2.66 7.34 -2.39 -0.02 2.64 16 20 N -0.72 -31.30 5.12 -318.25 -1.63 -32.93 16 21 C -0.24 -11.63 9.96 84.03 0.84 -10.80 16 22 H 0.09 3.96 7.83 -2.91 -0.02 3.94 16 23 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 24 N -0.96 -55.60 13.06 21.65 0.28 -55.31 16 25 Si 0.96 43.54 29.55 68.60 2.03 45.57 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 28 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 29 C 0.07 1.97 5.29 86.62 0.46 2.43 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.10 1.99 8.06 -2.39 -0.02 1.97 16 32 H 0.08 2.40 5.67 -2.39 -0.01 2.39 16 33 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.16 3.17 6.72 -2.91 -0.02 3.15 16 36 H 0.11 2.14 7.27 -2.39 -0.02 2.12 16 37 H 0.10 2.40 7.93 -2.38 -0.02 2.38 16 38 H 0.37 18.23 7.56 -92.71 -0.70 17.53 16 39 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.08 2.64 5.96 -2.39 -0.01 2.63 16 Total: -1.00 -64.61 354.06 4.30 -60.31 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.40 Total: 30.29 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 5.73 Total: 19.52 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -6.06 Total: -123.66 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.06 Total: -20.11 kcal Atomic # 9 Polarization: -14.18 SS G_CDS: 2.26 Total: -11.92 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -64.61 4.30 -60.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099248304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.459 kcal (2) G-P(sol) polarization free energy of solvation -64.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds