Wall clock time and date at job start Wed Apr 1 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45203 * 109.47043 * 2 1 4 4 C 1.34894 * 116.99898 * 179.97438 * 3 2 1 5 5 O 1.21633 * 119.99858 * 0.02562 * 4 3 2 6 6 C 1.46477 * 119.99785 * 180.02562 * 4 3 2 7 7 N 1.36019 * 126.38876 * 359.69016 * 6 4 3 8 8 C 1.29956 * 109.21308 * 179.88084 * 7 6 4 9 9 C 1.50701 * 125.23817 * 180.13382 * 8 7 6 10 10 N 1.36279 * 109.51934 * 0.38971 * 8 7 6 11 11 H 0.96997 * 126.16988 * 179.78318 * 10 8 7 12 12 C 1.36363 * 107.66553 * 359.75925 * 10 8 7 13 13 N 1.38285 * 126.81458 * 179.97438 * 12 10 8 14 14 C 1.34781 * 119.99834 * 0.03048 * 13 12 10 15 15 O 1.21597 * 120.00089 * 359.97438 * 14 13 12 16 16 C 1.47546 * 119.99914 * 180.02562 * 14 13 12 17 17 C 1.40063 * 119.89785 * 359.71811 * 16 14 13 18 18 C 1.36288 * 120.10145 * 179.76448 * 17 16 14 19 19 C 1.40907 * 119.90072 * 0.53292 * 18 17 16 20 20 C 1.41074 * 120.10612 * 179.69761 * 19 18 17 21 21 H 1.08001 * 119.99421 * 204.66587 * 20 19 18 22 22 C 1.40227 * 119.99692 * 24.66065 * 20 19 18 23 23 N 1.30640 * 120.00485 * 17.88405 * 22 20 19 24 24 Si 1.86803 * 119.99828 * 197.87786 * 22 20 19 25 25 H 1.48497 * 109.47095 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47076 * 120.00391 * 24 22 20 27 27 H 1.48504 * 109.47131 * 240.00135 * 24 22 20 28 28 C 1.40912 * 119.79333 * 359.72598 * 19 18 17 29 29 C 1.36288 * 119.89844 * 359.97438 * 28 19 18 30 30 H 1.08998 * 109.47244 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47251 * 299.99930 * 1 2 3 32 32 H 1.09005 * 109.47150 * 59.99577 * 1 2 3 33 33 H 1.09001 * 109.46834 * 240.00351 * 2 1 3 34 34 H 1.08996 * 109.47093 * 119.99813 * 2 1 3 35 35 H 1.09005 * 109.46522 * 270.29341 * 9 8 7 36 36 H 1.08993 * 109.47350 * 30.29834 * 9 8 7 37 37 H 1.09004 * 109.47218 * 150.30108 * 9 8 7 38 38 H 0.96996 * 120.00227 * 180.02562 * 13 12 10 39 39 H 1.08000 * 119.94985 * 0.02562 * 17 16 14 40 40 H 1.08008 * 120.05445 * 180.23388 * 18 17 16 41 41 H 0.96997 * 120.00266 * 179.97438 * 23 22 20 42 42 H 1.07998 * 120.05160 * 179.97438 * 28 19 18 43 43 H 1.07997 * 119.95254 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5457 0.0005 5 8 4.0922 0.5811 0.0005 6 6 3.9111 2.8993 0.0011 7 7 3.2077 4.0635 -0.0047 8 6 4.0368 5.0641 0.0005 9 6 3.6438 6.5190 -0.0004 10 7 5.3164 4.5953 0.0013 11 1 6.1233 5.1335 0.0018 12 6 5.2579 3.2329 0.0016 13 7 6.3284 2.3575 0.0019 14 6 7.5890 2.8345 0.0024 15 8 7.7849 4.0346 0.0021 16 6 8.7312 1.9006 0.0021 17 6 8.5031 0.5186 0.0073 18 6 9.5550 -0.3478 0.0022 19 6 10.8738 0.1484 0.0030 20 6 11.9659 -0.7446 0.0042 21 1 12.9217 -0.4282 0.3952 22 6 11.8104 -2.0430 -0.5022 23 7 10.7987 -2.3243 -1.2792 24 14 13.0501 -3.3704 -0.0657 25 1 14.0940 -2.7998 0.8231 26 1 12.3586 -4.4827 0.6342 27 1 13.6830 -3.8841 -1.3070 28 6 11.0984 1.5395 0.0033 29 6 10.0403 2.3985 0.0023 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5495 6.8691 -1.0284 36 1 2.6898 6.6380 0.5130 37 1 4.4081 7.1022 0.5133 38 1 6.1721 1.4002 0.0018 39 1 7.4920 0.1391 0.0111 40 1 9.3782 -1.4134 0.0024 41 1 10.6913 -3.2223 -1.6298 42 1 12.1075 1.9244 0.0044 43 1 10.2115 3.4648 0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534736708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:01 Heat of formation + Delta-G solvation = -61.708290 kcal Electronic energy + Delta-G solvation = -28692.689085 eV Core-core repulsion = 24509.956295 eV Total energy + Delta-G solvation = -4182.732790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24639 -39.92669 -39.46324 -37.39443 -36.48379 -34.78148 -34.09837 -32.69434 -31.67293 -31.34359 -30.22832 -29.64475 -27.37267 -26.15891 -24.39087 -22.75831 -22.15253 -21.25364 -21.14575 -20.36540 -19.97129 -18.30294 -17.70244 -17.20982 -16.85953 -16.55934 -16.28431 -15.68576 -15.60242 -15.20507 -14.48581 -14.41832 -14.17219 -13.99973 -13.75968 -13.43281 -13.25703 -12.96277 -12.85809 -12.85544 -12.62550 -12.28112 -12.15734 -11.98149 -11.63176 -11.61198 -11.41007 -11.13532 -10.89021 -10.76080 -10.63477 -10.49871 -10.34408 -10.25353 -10.01042 -9.75378 -9.55721 -9.49168 -7.96689 -7.85774 -7.65921 -7.21673 -4.79140 1.26855 1.98678 2.29970 2.42225 2.78929 2.86144 2.89023 2.89334 2.91863 3.31569 3.54287 3.59535 3.63199 4.24672 4.34585 4.80178 4.86442 4.88344 4.99630 5.20056 5.23333 5.37676 5.38850 5.51525 5.54650 5.68171 5.72622 5.75183 5.84570 5.94036 5.99622 6.10856 6.44420 6.56033 6.60786 6.65169 6.83054 6.93046 7.23863 7.33114 7.39271 7.56209 7.68396 7.68668 7.80333 7.87730 8.04030 8.21597 8.42791 8.43940 8.55940 9.69191 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.002726 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.489415 B =10267.316120 C =12516.379622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.339 6.339 4 C 0.563 3.437 5 O -0.525 6.525 6 C -0.115 4.115 7 N -0.423 5.423 8 C 0.200 3.800 9 C -0.063 4.063 10 N -0.557 5.557 11 H 0.439 0.561 12 C 0.352 3.648 13 N -0.639 5.639 14 C 0.571 3.429 15 O -0.569 6.569 16 C -0.296 4.296 17 C -0.058 4.058 18 C -0.175 4.175 19 C 0.130 3.870 20 C -0.428 4.428 21 H 0.089 0.911 22 C 0.071 3.929 23 N -0.759 5.759 24 Si 0.916 3.084 25 H -0.256 1.256 26 H -0.267 1.267 27 H -0.270 1.270 28 C -0.239 4.239 29 C -0.012 4.012 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.437 0.563 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.290 0.710 42 H 0.102 0.898 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.743 5.512 1.614 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.255 6.255 4 C 0.410 3.590 5 O -0.415 6.415 6 C -0.243 4.243 7 N -0.144 5.144 8 C -0.066 4.066 9 C -0.121 4.121 10 N -0.176 5.176 11 H 0.286 0.714 12 C 0.129 3.871 13 N -0.289 5.289 14 C 0.371 3.629 15 O -0.452 6.452 16 C -0.301 4.301 17 C -0.077 4.077 18 C -0.194 4.194 19 C 0.126 3.874 20 C -0.454 4.454 21 H 0.107 0.893 22 C -0.152 4.152 23 N -0.381 5.381 24 Si 0.739 3.261 25 H -0.179 1.179 26 H -0.192 1.192 27 H -0.195 1.195 28 C -0.258 4.258 29 C -0.031 4.031 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.282 0.718 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.364 5.759 1.450 14.624 hybrid contribution 1.674 -1.187 0.006 2.052 sum -11.689 4.572 1.456 12.636 Atomic orbital electron populations 1.21783 0.92731 1.02691 1.03549 1.23035 0.95265 0.80427 1.02676 1.86666 1.23118 1.31531 1.84166 1.19228 0.80652 0.87026 0.72079 1.90835 1.60438 1.41441 1.48748 1.18823 0.86886 0.91524 1.27060 1.70481 1.31335 0.95971 1.16564 1.23213 0.78743 0.97351 1.07317 1.20182 1.03090 0.85109 1.03752 1.43603 1.11435 1.04696 1.57821 0.71351 1.18192 0.88632 0.82183 0.98054 1.43324 1.03181 1.10710 1.71675 1.19015 0.81883 0.88504 0.73453 1.90431 1.84748 1.16683 1.53311 1.18521 0.91047 0.91935 1.28566 1.20538 0.97666 0.92090 0.97448 1.20988 0.91772 0.99350 1.07306 1.17856 0.93026 0.91514 0.84975 1.20003 0.98111 0.95394 1.31914 0.89259 1.26195 0.96466 1.00070 0.92461 1.69733 1.26583 1.22636 1.19169 0.86105 0.80580 0.79675 0.79703 1.17897 1.19156 1.19456 1.20709 0.97019 0.93333 1.14757 1.20322 0.91157 0.98099 0.93571 0.90379 0.91500 0.91496 0.91185 0.91205 0.89993 0.88875 0.90537 0.71839 0.88844 0.85894 0.89827 0.88031 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.87 16 2 C 0.06 0.69 6.20 37.16 0.23 0.92 16 3 O -0.34 -5.14 10.23 -41.02 -0.42 -5.56 16 4 C 0.56 9.64 7.93 34.05 0.27 9.91 16 5 O -0.52 -9.52 14.94 -19.37 -0.29 -9.81 16 6 C -0.12 -2.01 7.07 -82.50 -0.58 -2.59 16 7 N -0.42 -6.82 11.31 -6.82 -0.08 -6.90 16 8 C 0.20 2.72 8.12 -154.72 -1.26 1.46 16 9 C -0.06 -0.52 10.51 36.01 0.38 -0.15 16 10 N -0.56 -8.49 5.75 -8.93 -0.05 -8.54 16 11 H 0.44 6.48 6.54 -40.82 -0.27 6.21 16 12 C 0.35 6.18 7.72 -152.35 -1.18 5.00 16 13 N -0.64 -11.82 5.31 -11.81 -0.06 -11.88 16 14 C 0.57 11.64 7.72 -12.46 -0.10 11.54 16 15 O -0.57 -11.76 13.90 5.28 0.07 -11.69 16 16 C -0.30 -6.50 5.89 -104.73 -0.62 -7.12 16 17 C -0.06 -1.28 9.47 -39.60 -0.38 -1.66 16 18 C -0.18 -4.17 8.63 -39.27 -0.34 -4.51 16 19 C 0.13 3.16 5.58 -106.80 -0.60 2.56 16 20 C -0.43 -10.09 9.04 -37.76 -0.34 -10.43 16 21 H 0.09 2.00 7.91 -52.49 -0.42 1.58 16 22 C 0.07 1.58 5.13 -17.31 -0.09 1.49 16 23 N -0.76 -17.47 10.95 55.56 0.61 -16.86 16 24 Si 0.92 16.44 29.60 -169.99 -5.03 11.41 16 25 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 26 H -0.27 -4.74 7.11 56.52 0.40 -4.33 16 27 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 28 C -0.24 -5.45 9.73 -39.27 -0.38 -5.83 16 29 C -0.01 -0.27 9.52 -39.60 -0.38 -0.65 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.44 8.01 4.89 -40.82 -0.20 7.81 16 39 H 0.09 1.86 6.37 -52.49 -0.33 1.52 16 40 H 0.12 2.98 6.16 -52.48 -0.32 2.66 16 41 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 42 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 43 H 0.10 2.14 7.63 -52.49 -0.40 1.74 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -28.09 372.85 -9.48 -37.57 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -4.88 Total: 17.55 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -4.97 Total: -0.91 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.42 Total: -44.18 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.64 Total: -27.06 kcal Atomic # 14 Polarization: 16.44 SS G_CDS: -5.03 Total: 11.41 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.09 -9.48 -37.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534736708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.139 kcal (2) G-P(sol) polarization free energy of solvation -28.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds