Wall clock time and date at job start Wed Apr 1 2020 02:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45203 * 109.47043 * 2 1 4 4 C 1.34894 * 116.99898 * 179.97438 * 3 2 1 5 5 O 1.21633 * 119.99858 * 0.02562 * 4 3 2 6 6 C 1.46477 * 119.99785 * 180.02562 * 4 3 2 7 7 N 1.36019 * 126.38876 * 359.69016 * 6 4 3 8 8 C 1.29956 * 109.21308 * 179.88084 * 7 6 4 9 9 C 1.50701 * 125.23817 * 180.13382 * 8 7 6 10 10 N 1.36279 * 109.51934 * 0.38971 * 8 7 6 11 11 H 0.96997 * 126.16988 * 179.78318 * 10 8 7 12 12 C 1.36363 * 107.66553 * 359.75925 * 10 8 7 13 13 N 1.38285 * 126.81458 * 179.97438 * 12 10 8 14 14 C 1.34781 * 119.99834 * 0.03048 * 13 12 10 15 15 O 1.21597 * 120.00089 * 359.97438 * 14 13 12 16 16 C 1.47546 * 119.99914 * 180.02562 * 14 13 12 17 17 C 1.40063 * 119.89785 * 359.71811 * 16 14 13 18 18 C 1.36288 * 120.10145 * 179.76448 * 17 16 14 19 19 C 1.40907 * 119.90072 * 0.53292 * 18 17 16 20 20 C 1.41074 * 120.10612 * 179.69761 * 19 18 17 21 21 H 1.08001 * 119.99421 * 204.66587 * 20 19 18 22 22 C 1.40227 * 119.99692 * 24.66065 * 20 19 18 23 23 N 1.30640 * 120.00485 * 17.88405 * 22 20 19 24 24 Si 1.86803 * 119.99828 * 197.87786 * 22 20 19 25 25 H 1.48497 * 109.47095 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47076 * 120.00391 * 24 22 20 27 27 H 1.48504 * 109.47131 * 240.00135 * 24 22 20 28 28 C 1.40912 * 119.79333 * 359.72598 * 19 18 17 29 29 C 1.36288 * 119.89844 * 359.97438 * 28 19 18 30 30 H 1.08998 * 109.47244 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47251 * 299.99930 * 1 2 3 32 32 H 1.09005 * 109.47150 * 59.99577 * 1 2 3 33 33 H 1.09001 * 109.46834 * 240.00351 * 2 1 3 34 34 H 1.08996 * 109.47093 * 119.99813 * 2 1 3 35 35 H 1.09005 * 109.46522 * 270.29341 * 9 8 7 36 36 H 1.08993 * 109.47350 * 30.29834 * 9 8 7 37 37 H 1.09004 * 109.47218 * 150.30108 * 9 8 7 38 38 H 0.96996 * 120.00227 * 180.02562 * 13 12 10 39 39 H 1.08000 * 119.94985 * 0.02562 * 17 16 14 40 40 H 1.08008 * 120.05445 * 180.23388 * 18 17 16 41 41 H 0.96997 * 120.00266 * 179.97438 * 23 22 20 42 42 H 1.07998 * 120.05160 * 179.97438 * 28 19 18 43 43 H 1.07997 * 119.95254 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5457 0.0005 5 8 4.0922 0.5811 0.0005 6 6 3.9111 2.8993 0.0011 7 7 3.2077 4.0635 -0.0047 8 6 4.0368 5.0641 0.0005 9 6 3.6438 6.5190 -0.0004 10 7 5.3164 4.5953 0.0013 11 1 6.1233 5.1335 0.0018 12 6 5.2579 3.2329 0.0016 13 7 6.3284 2.3575 0.0019 14 6 7.5890 2.8345 0.0024 15 8 7.7849 4.0346 0.0021 16 6 8.7312 1.9006 0.0021 17 6 8.5031 0.5186 0.0073 18 6 9.5550 -0.3478 0.0022 19 6 10.8738 0.1484 0.0030 20 6 11.9659 -0.7446 0.0042 21 1 12.9217 -0.4282 0.3952 22 6 11.8104 -2.0430 -0.5022 23 7 10.7987 -2.3243 -1.2792 24 14 13.0501 -3.3704 -0.0657 25 1 14.0940 -2.7998 0.8231 26 1 12.3586 -4.4827 0.6342 27 1 13.6830 -3.8841 -1.3070 28 6 11.0984 1.5395 0.0033 29 6 10.0403 2.3985 0.0023 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5495 6.8691 -1.0284 36 1 2.6898 6.6380 0.5130 37 1 4.4081 7.1022 0.5133 38 1 6.1721 1.4002 0.0018 39 1 7.4920 0.1391 0.0111 40 1 9.3782 -1.4134 0.0024 41 1 10.6913 -3.2223 -1.6298 42 1 12.1075 1.9244 0.0044 43 1 10.2115 3.4648 0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534736708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:00 Heat of formation + Delta-G solvation = -75.580686 kcal Electronic energy + Delta-G solvation = -28693.290637 eV Core-core repulsion = 24509.956295 eV Total energy + Delta-G solvation = -4183.334342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.50633 -41.19437 -41.01107 -39.10923 -37.72293 -36.24788 -35.80076 -33.90436 -32.76077 -32.39507 -31.70999 -31.40975 -28.61017 -27.71743 -25.66356 -24.07459 -23.41120 -22.91493 -22.45883 -21.68555 -21.47436 -19.59998 -19.42527 -18.59997 -18.37591 -17.74456 -17.53125 -17.21957 -16.92278 -16.52343 -16.03671 -15.83642 -15.81860 -15.18451 -15.01811 -14.81304 -14.60810 -14.26953 -14.01499 -13.83281 -13.68840 -13.60178 -13.33963 -13.26618 -12.93601 -12.91249 -12.74312 -12.49476 -12.46595 -12.13366 -11.95079 -11.83496 -11.58286 -11.52972 -11.47861 -11.27143 -11.22365 -11.14570 -9.70555 -9.58997 -9.06115 -8.88494 -6.57812 -0.18002 0.39819 1.08232 1.10447 1.16075 1.35673 1.39998 1.54509 1.68634 1.86228 2.12049 2.15619 2.21498 2.65122 3.16069 3.58478 3.60258 3.90815 3.93644 4.02549 4.10372 4.16438 4.35575 4.36038 4.37061 4.53491 4.75924 4.79667 4.81537 4.86225 4.93693 4.94018 5.03598 5.08362 5.11090 5.18077 5.32112 5.37783 5.48993 5.68763 5.79048 5.91039 6.07654 6.11754 6.25371 6.44776 6.50425 6.66619 6.77324 6.78998 6.83798 8.05693 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.002726 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.489415 B =10267.316120 C =12516.379622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.344 6.344 4 C 0.559 3.441 5 O -0.543 6.543 6 C -0.121 4.121 7 N -0.447 5.447 8 C 0.221 3.779 9 C -0.063 4.063 10 N -0.555 5.555 11 H 0.442 0.558 12 C 0.323 3.677 13 N -0.634 5.634 14 C 0.576 3.424 15 O -0.573 6.573 16 C -0.304 4.304 17 C -0.055 4.055 18 C -0.196 4.196 19 C 0.104 3.896 20 C -0.455 4.455 21 H 0.094 0.906 22 C 0.035 3.965 23 N -0.790 5.790 24 Si 0.990 3.010 25 H -0.253 1.253 26 H -0.262 1.262 27 H -0.263 1.263 28 C -0.250 4.250 29 C -0.017 4.017 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.436 0.564 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.300 0.700 42 H 0.113 0.887 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.703 6.247 1.782 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.259 6.259 4 C 0.407 3.593 5 O -0.435 6.435 6 C -0.248 4.248 7 N -0.168 5.168 8 C -0.046 4.046 9 C -0.122 4.122 10 N -0.172 5.172 11 H 0.289 0.711 12 C 0.101 3.899 13 N -0.284 5.284 14 C 0.374 3.626 15 O -0.456 6.456 16 C -0.309 4.309 17 C -0.074 4.074 18 C -0.215 4.215 19 C 0.100 3.900 20 C -0.481 4.481 21 H 0.112 0.888 22 C -0.186 4.186 23 N -0.412 5.412 24 Si 0.809 3.191 25 H -0.176 1.176 26 H -0.186 1.186 27 H -0.187 1.187 28 C -0.269 4.269 29 C -0.036 4.036 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.280 0.720 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.368 6.518 1.615 15.860 hybrid contribution 1.777 -1.289 -0.066 2.196 sum -12.591 5.228 1.548 13.721 Atomic orbital electron populations 1.21809 0.90019 1.04450 1.03695 1.23406 0.97364 0.78811 1.02788 1.86663 1.21925 1.33739 1.83615 1.19351 0.81270 0.86904 0.71801 1.90812 1.60979 1.41988 1.49683 1.19030 0.87040 0.92232 1.26523 1.70545 1.31722 0.96017 1.18494 1.24340 0.77659 0.99036 1.03524 1.20504 1.04437 0.81596 1.05620 1.43693 1.12214 1.03857 1.57458 0.71057 1.18296 0.88352 0.83078 1.00139 1.43064 1.02928 1.10850 1.71522 1.18729 0.82174 0.88146 0.73502 1.90418 1.85090 1.16582 1.53518 1.18748 0.91835 0.92235 1.28067 1.20689 0.98088 0.92177 0.96486 1.20984 0.92367 0.99124 1.09054 1.18189 0.93584 0.92464 0.85731 1.20281 0.98255 0.96622 1.32969 0.88804 1.27038 0.98246 1.01607 0.91665 1.69761 1.28068 1.23703 1.19687 0.85025 0.78008 0.76551 0.79510 1.17593 1.18643 1.18715 1.20892 0.97916 0.93065 1.15030 1.20504 0.91164 0.98702 0.93249 0.87770 0.91299 0.91358 0.91173 0.91082 0.87957 0.87443 0.88253 0.71968 0.87261 0.86937 0.88893 0.86849 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 10.29 71.98 0.74 -1.40 16 2 C 0.05 1.11 6.20 71.98 0.45 1.56 16 3 O -0.34 -10.33 10.23 -58.09 -0.59 -10.93 16 4 C 0.56 19.26 7.93 69.97 0.55 19.81 16 5 O -0.54 -20.04 14.94 19.40 0.29 -19.75 16 6 C -0.12 -4.18 7.07 40.76 0.29 -3.90 16 7 N -0.45 -13.88 11.31 -175.49 -1.98 -15.86 16 8 C 0.22 5.57 8.12 137.89 1.12 6.68 16 9 C -0.06 -0.84 10.51 71.24 0.75 -0.09 16 10 N -0.55 -16.19 5.75 -182.16 -1.05 -17.23 16 11 H 0.44 12.39 6.54 -92.71 -0.61 11.78 16 12 C 0.32 11.24 7.72 131.99 1.02 12.26 16 13 N -0.63 -23.57 5.31 -309.53 -1.64 -25.21 16 14 C 0.58 23.41 7.72 86.70 0.67 24.07 16 15 O -0.57 -23.29 13.90 -4.02 -0.06 -23.34 16 16 C -0.30 -13.49 5.89 -19.94 -0.12 -13.61 16 17 C -0.06 -2.49 9.47 22.26 0.21 -2.28 16 18 C -0.20 -9.65 8.63 22.47 0.19 -9.46 16 19 C 0.10 5.19 5.58 -21.28 -0.12 5.07 16 20 C -0.46 -21.89 9.04 23.45 0.21 -21.68 16 21 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 22 C 0.03 1.56 5.13 85.35 0.44 2.00 16 23 N -0.79 -36.95 10.95 21.87 0.24 -36.71 16 24 Si 0.99 33.41 29.60 68.60 2.03 35.44 16 25 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 26 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 27 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 28 C -0.25 -11.60 9.73 22.47 0.22 -11.38 16 29 C -0.02 -0.76 9.52 22.26 0.21 -0.55 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.44 16.26 4.89 -92.71 -0.45 15.80 16 39 H 0.11 4.45 6.37 -2.91 -0.02 4.43 16 40 H 0.11 5.68 6.16 -2.91 -0.02 5.66 16 41 H 0.30 12.44 8.29 -92.71 -0.77 11.67 16 42 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 43 H 0.12 4.77 7.63 -2.91 -0.02 4.75 16 Total: -1.00 -61.55 372.85 4.10 -57.44 By element: Atomic # 1 Polarization: 49.00 SS G_CDS: 0.03 Total: 49.03 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 6.84 Total: 7.12 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -4.44 Total: -95.02 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -0.36 Total: -54.02 kcal Atomic # 14 Polarization: 33.41 SS G_CDS: 2.03 Total: 35.44 kcal Total: -61.55 4.10 -57.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534736708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.137 kcal (2) G-P(sol) polarization free energy of solvation -61.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds