Wall clock time and date at job start Wed Apr 1 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46657 * 2 1 4 4 C 1.34225 * 125.73824 * 125.00128 * 3 2 1 5 5 C 1.38127 * 107.40729 * 179.97438 * 4 3 2 6 6 C 1.47283 * 126.42861 * 179.97438 * 5 4 3 7 7 O 1.21527 * 120.00274 * 0.02562 * 6 5 4 8 8 O 1.34759 * 120.00059 * 180.02562 * 6 5 4 9 9 C 1.45199 * 117.00071 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47231 * 179.97438 * 9 8 6 11 11 O 1.21277 * 119.99788 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00132 * 180.02562 * 10 9 8 13 13 C 1.39237 * 120.00231 * 185.18464 * 12 10 9 14 14 C 1.39486 * 119.82855 * 324.05356 * 13 12 10 15 15 C 1.36370 * 120.16515 * 180.29933 * 14 13 12 16 16 C 1.40876 * 119.82773 * 359.48291 * 15 14 13 17 17 C 1.41160 * 120.16091 * 180.25102 * 16 15 14 18 18 H 1.07993 * 119.99606 * 205.02487 * 17 16 15 19 19 C 1.39904 * 120.00083 * 25.02497 * 17 16 15 20 20 N 1.30878 * 119.99809 * 17.77995 * 19 17 16 21 21 Si 1.86795 * 120.00190 * 197.77450 * 19 17 16 22 22 H 1.48501 * 109.47012 * 94.98303 * 21 19 17 23 23 H 1.48500 * 109.47567 * 214.98476 * 21 19 17 24 24 H 1.48504 * 109.46924 * 334.98548 * 21 19 17 25 25 C 1.40865 * 119.67384 * 0.51475 * 16 15 14 26 26 C 1.36379 * 119.82607 * 359.73526 * 25 16 15 27 27 C 1.41349 * 107.14541 * 0.24582 * 5 4 3 28 28 N 1.30431 * 108.01017 * 359.58388 * 27 5 4 29 29 H 1.09009 * 109.46774 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47381 * 299.99620 * 1 2 3 31 31 H 1.08996 * 109.47390 * 60.00292 * 1 2 3 32 32 H 1.08998 * 109.46898 * 240.00577 * 2 1 3 33 33 H 1.08996 * 109.47390 * 119.99708 * 2 1 3 34 34 H 1.07993 * 126.29959 * 359.97438 * 4 3 2 35 35 H 1.09004 * 109.47265 * 59.99381 * 9 8 6 36 36 H 1.09004 * 109.46913 * 300.00166 * 9 8 6 37 37 H 0.97007 * 119.99967 * 5.17437 * 12 10 9 38 38 H 1.07998 * 119.91418 * 0.02562 * 14 13 12 39 39 H 1.08005 * 120.08508 * 179.69974 * 15 14 13 40 40 H 0.97000 * 119.99698 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.08712 * 179.71205 * 25 16 15 42 42 H 1.07999 * 119.91122 * 179.97438 * 26 25 16 43 43 H 1.07996 * 125.99200 * 179.76185 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8687 1.9122 0.8924 5 6 3.0712 3.2313 0.5363 6 6 3.9314 4.2031 1.2326 7 8 4.5486 3.8673 2.2241 8 8 4.0341 5.4647 0.7702 9 6 4.9004 6.3681 1.5062 10 6 4.8902 7.7229 0.8464 11 8 4.2193 7.9086 -0.1467 12 7 5.6274 8.7278 1.3593 13 6 5.5355 10.0064 0.8157 14 6 5.3590 10.1649 -0.5588 15 6 5.2742 11.4141 -1.0992 16 6 5.3544 12.5458 -0.2641 17 6 5.2622 13.8420 -0.8153 18 1 5.7075 14.6805 -0.3008 19 6 4.5938 14.0404 -2.0283 20 7 3.7689 13.1290 -2.4775 21 14 4.8786 15.6060 -3.0065 22 1 5.9271 15.3661 -4.0304 23 1 3.6157 16.0082 -3.6761 24 1 5.3198 16.6886 -2.0906 25 6 5.5327 12.3776 1.1231 26 6 5.6209 11.1221 1.6483 27 6 2.2930 3.4754 -0.6182 28 7 1.6769 2.3690 -0.9306 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3130 1.4019 1.7342 35 1 5.9167 5.9740 1.5106 36 1 4.5421 6.4601 2.5316 37 1 6.2220 8.5603 2.1072 38 1 5.2937 9.2963 -1.1972 39 1 5.1423 11.5354 -2.1643 40 1 3.3052 13.2668 -3.3183 41 1 5.5998 13.2406 1.7689 42 1 5.7581 10.9916 2.7116 43 1 2.2232 4.4127 -1.1501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734046819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:58 Heat of formation + Delta-G solvation = -16.196941 kcal Electronic energy + Delta-G solvation = -27588.796698 eV Core-core repulsion = 23408.037429 eV Total energy + Delta-G solvation = -4180.759270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75260 -40.28527 -39.34316 -37.27655 -36.23936 -35.00004 -34.45253 -32.99465 -31.00753 -30.51611 -29.67824 -29.35776 -28.06812 -25.02698 -24.45253 -23.40982 -21.52967 -21.13270 -20.99443 -20.49970 -19.64837 -18.32628 -17.43894 -17.26213 -16.89942 -16.67823 -16.01829 -15.96590 -15.75933 -15.19116 -14.83379 -14.60541 -14.36051 -14.00047 -13.78625 -13.33346 -13.27230 -13.01729 -12.74748 -12.66028 -12.59691 -12.57619 -12.05248 -11.99996 -11.83626 -11.48694 -11.36841 -11.13777 -10.94744 -10.77071 -10.54001 -10.50685 -9.97379 -9.94837 -9.87592 -9.45026 -9.13444 -9.10292 -8.68021 -7.52183 -7.04050 -6.74250 -4.29627 1.03846 1.81030 1.83714 2.43289 2.56983 2.96256 3.01749 3.08492 3.11423 3.12540 3.32434 3.75022 3.93932 3.99500 4.28875 4.37432 4.57710 4.62888 4.64336 4.74156 4.92279 4.98640 5.07047 5.09042 5.11686 5.25623 5.40996 5.58620 5.70931 6.11409 6.14883 6.29399 6.36890 6.40949 6.78063 6.98104 7.04801 7.15348 7.17943 7.28452 7.59475 7.64257 7.72887 7.95094 8.06102 8.18820 8.29995 8.62978 8.71596 8.88538 8.99895 10.18927 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.001817 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.132651 B =15405.956934 C =16665.276298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.125 3.875 3 N -0.359 5.359 4 C 0.137 3.863 5 C -0.280 4.280 6 C 0.547 3.453 7 O -0.525 6.525 8 O -0.324 6.324 9 C 0.055 3.945 10 C 0.498 3.502 11 O -0.505 6.505 12 N -0.646 5.646 13 C -0.012 4.012 14 C -0.084 4.084 15 C -0.158 4.158 16 C 0.107 3.893 17 C -0.459 4.459 18 H 0.079 0.921 19 C 0.074 3.926 20 N -0.786 5.786 21 Si 0.909 3.091 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.217 4.217 26 C -0.100 4.100 27 C 0.109 3.891 28 N -0.297 5.297 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.191 0.809 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.396 0.604 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.282 0.718 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 -23.875 6.222 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.005 3.995 3 N -0.138 5.138 4 C -0.016 4.016 5 C -0.294 4.294 6 C 0.392 3.608 7 O -0.416 6.416 8 O -0.238 6.238 9 C -0.023 4.023 10 C 0.282 3.718 11 O -0.380 6.380 12 N -0.291 5.291 13 C -0.104 4.104 14 C -0.104 4.104 15 C -0.178 4.178 16 C 0.105 3.895 17 C -0.488 4.488 18 H 0.097 0.903 19 C -0.145 4.145 20 N -0.411 5.411 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.237 4.237 26 C -0.120 4.120 27 C -0.079 4.079 28 N -0.116 5.116 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.208 0.792 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.230 0.770 38 H 0.125 0.875 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.564 -24.611 4.763 25.320 hybrid contribution 0.966 0.981 0.736 1.561 sum -2.598 -23.630 5.499 24.400 Atomic orbital electron populations 1.22070 0.93183 1.03233 1.04002 1.21878 0.96631 0.76548 1.04431 1.48736 1.33848 1.10922 1.20247 1.22942 0.91297 0.93071 0.94269 1.19264 1.12006 0.93772 1.04313 1.19984 0.78641 0.80736 0.81395 1.90827 1.45375 1.79399 1.25972 1.86600 1.62328 1.20734 1.54163 1.22706 0.95412 0.88138 0.96018 1.19942 0.80884 0.85166 0.85796 1.90754 1.40922 1.82179 1.24103 1.42731 1.42555 1.08146 1.35671 1.17133 1.19140 0.81479 0.92636 1.20557 0.99653 0.97588 0.92566 1.20996 1.05899 0.90880 1.00043 1.17692 0.87757 0.93516 0.90581 1.19578 1.30586 0.94445 1.04176 0.90307 1.25955 0.92899 0.98264 0.97338 1.69867 1.17953 1.34219 1.19014 0.86288 0.78680 0.81706 0.79984 1.19316 1.20280 1.18560 1.20543 1.13366 0.94720 0.95055 1.20056 1.03262 0.92332 0.96376 1.24406 0.91955 0.97527 0.94022 1.77267 1.24127 0.97013 1.13187 0.90337 0.91851 0.90738 0.89027 0.88119 0.79196 0.88446 0.88305 0.77035 0.87495 0.86261 0.90718 0.88593 0.89127 0.78071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.09 37.16 0.37 -0.34 16 2 C 0.13 0.53 7.21 -4.04 -0.03 0.50 16 3 N -0.36 -2.99 3.65 -60.80 -0.22 -3.21 16 4 C 0.14 1.17 11.25 -16.55 -0.19 0.98 16 5 C -0.28 -3.22 6.13 -105.08 -0.64 -3.87 16 6 C 0.55 7.36 7.95 34.41 0.27 7.63 16 7 O -0.53 -7.59 16.69 -19.29 -0.32 -7.91 16 8 O -0.32 -4.83 9.60 -47.33 -0.45 -5.28 16 9 C 0.05 0.74 5.96 36.00 0.21 0.95 16 10 C 0.50 8.84 7.74 -10.99 -0.09 8.75 16 11 O -0.51 -11.38 13.94 -14.10 -0.20 -11.58 16 12 N -0.65 -11.15 5.30 -9.74 -0.05 -11.21 16 13 C -0.01 -0.27 6.30 -83.57 -0.53 -0.79 16 14 C -0.08 -2.09 8.62 -39.79 -0.34 -2.43 16 15 C -0.16 -4.24 8.63 -39.26 -0.34 -4.58 16 16 C 0.11 2.87 5.57 -106.80 -0.59 2.27 16 17 C -0.46 -12.14 9.03 -37.85 -0.34 -12.48 16 18 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 19 C 0.07 1.87 5.13 -17.33 -0.09 1.78 16 20 N -0.79 -20.75 10.98 55.55 0.61 -20.14 16 21 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 C -0.22 -5.23 9.74 -39.26 -0.38 -5.61 16 26 C -0.10 -2.17 9.90 -39.79 -0.39 -2.57 16 27 C 0.11 1.25 11.87 -16.96 -0.20 1.05 16 28 N -0.30 -3.30 12.33 30.87 0.38 -2.92 16 29 H 0.08 0.17 8.14 -51.92 -0.42 -0.25 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.14 8.06 -51.93 -0.42 -0.28 16 34 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.40 5.10 8.82 -40.82 -0.36 4.74 16 38 H 0.11 2.68 6.24 -52.49 -0.33 2.35 16 39 H 0.12 3.32 6.19 -52.48 -0.32 2.99 16 40 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 41 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.20 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -34.64 381.10 -8.04 -42.68 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.21 Total: 8.88 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -3.29 Total: -8.74 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.72 Total: -37.48 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.97 Total: -24.77 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.64 -8.04 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734046819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.486 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds