Wall clock time and date at job start Wed Apr 1 2020 01:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99751 * 2 1 4 4 N 1.46906 * 109.46645 * 124.15189 * 3 2 1 5 5 C 1.46899 * 111.00149 * 300.33501 * 4 3 2 6 6 C 1.50701 * 109.46838 * 288.21673 * 5 4 3 7 7 H 1.08002 * 120.00201 * 354.75958 * 6 5 4 8 8 C 1.37873 * 119.99868 * 174.75594 * 6 5 4 9 9 N 1.31509 * 120.00150 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00148 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47044 * 59.99622 * 10 8 6 12 12 H 1.48495 * 109.47535 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46970 * 300.00522 * 10 8 6 14 14 C 1.46899 * 110.99579 * 64.28755 * 4 3 2 15 15 C 1.50697 * 109.47578 * 66.04292 * 14 4 3 16 16 N 1.32434 * 118.53517 * 89.99664 * 15 14 4 17 17 C 1.32324 * 121.53618 * 180.02562 * 16 15 14 18 18 O 1.35281 * 120.87457 * 180.02562 * 17 16 15 19 19 C 1.41593 * 118.24915 * 359.97438 * 17 16 15 20 20 C 1.40096 * 121.88511 * 179.97438 * 19 17 16 21 21 C 1.36060 * 119.86699 * 179.97438 * 20 19 17 22 22 C 1.40464 * 120.77906 * 0.03296 * 21 20 19 23 23 C 1.47880 * 119.72055 * 179.97438 * 22 21 20 24 24 O 1.21456 * 119.99425 * 180.02562 * 23 22 21 25 25 O 1.34694 * 120.00320 * 0.02562 * 23 22 21 26 26 C 1.38597 * 120.55429 * 359.97438 * 22 21 20 27 27 C 1.40122 * 119.35940 * 359.97438 * 26 22 21 28 28 N 1.31116 * 118.53956 * 270.02060 * 15 14 4 29 29 H 1.07999 * 119.99677 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.00004 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.00004 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46780 * 4.15847 * 3 2 1 33 33 H 1.09000 * 109.47152 * 244.15093 * 3 2 1 34 34 H 1.08994 * 109.47490 * 48.21610 * 5 4 3 35 35 H 1.08998 * 109.47144 * 168.22155 * 5 4 3 36 36 H 0.97007 * 119.99955 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47607 * 306.04132 * 14 4 3 38 38 H 1.09004 * 109.46967 * 186.04340 * 14 4 3 39 39 H 0.96700 * 113.99685 * 269.97845 * 18 17 16 40 40 H 1.07998 * 120.06633 * 359.97438 * 20 19 17 41 41 H 1.07996 * 119.61136 * 180.02562 * 21 20 19 42 42 H 0.96696 * 116.99673 * 180.02562 * 25 23 22 43 43 H 1.07999 * 120.32437 * 179.70769 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9817 1.3404 1.1462 5 6 2.2481 1.2124 2.4125 6 6 1.4867 2.4845 2.6826 7 1 1.6080 3.3357 2.0291 8 6 0.6349 2.5616 3.7641 9 7 0.4874 1.5253 4.5602 10 14 -0.3096 4.1382 4.0986 11 1 -1.1776 4.4515 2.9351 12 1 -1.1494 3.9645 5.3109 13 1 0.6481 5.2523 4.3158 14 6 4.0122 0.3003 1.0273 15 6 4.8993 0.6045 -0.1523 16 7 5.9759 1.3510 0.0417 17 6 6.7954 1.6550 -0.9517 18 8 7.8917 2.4184 -0.7383 19 6 6.4953 1.1594 -2.2437 20 6 7.3101 1.4348 -3.3496 21 6 6.9830 0.9369 -4.5728 22 6 5.8340 0.1473 -4.7437 23 6 5.5004 -0.3814 -6.0839 24 8 4.5078 -1.0643 -6.2374 25 8 6.2972 -0.1056 -7.1342 26 6 5.0103 -0.1405 -3.6668 27 6 5.3340 0.3640 -2.4003 28 7 4.5708 0.1186 -1.3249 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3574 2.1323 0.0745 33 1 2.6332 1.3958 -0.9248 34 1 1.5498 0.3783 2.3452 35 1 2.9530 1.0316 3.2240 36 1 -0.1121 1.5795 5.3209 37 1 3.5351 -0.6691 0.8827 38 1 4.6123 0.2777 1.9370 39 1 7.7372 3.3670 -0.8447 40 1 8.1960 2.0411 -3.2314 41 1 7.6142 1.1514 -5.4224 42 1 6.0379 -0.4730 -7.9903 43 1 4.1252 -0.7441 -3.8033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:37 Heat of formation + Delta-G solvation = -21.920128 kcal Electronic energy + Delta-G solvation = -29090.059545 eV Core-core repulsion = 24909.052100 eV Total energy + Delta-G solvation = -4181.007446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78369 -40.57121 -38.24743 -38.17234 -36.82570 -36.53571 -33.47599 -32.77342 -32.51937 -31.76732 -30.60195 -27.91293 -26.69704 -26.08199 -24.52329 -23.19230 -22.71144 -22.02831 -20.93104 -19.59855 -18.94386 -18.60081 -18.39243 -17.98634 -16.86025 -16.37981 -16.15849 -16.01720 -15.53442 -15.19784 -14.86897 -14.53712 -14.35696 -14.16478 -14.06791 -13.75553 -13.61153 -13.32688 -12.75547 -12.45440 -12.30630 -12.12511 -12.06868 -11.96672 -11.50913 -11.16620 -11.14356 -11.07831 -10.92857 -10.81980 -10.68030 -10.53028 -10.41314 -9.94989 -9.66179 -9.41450 -9.27361 -8.71524 -8.57044 -8.38508 -7.31958 -5.99343 -4.00069 -0.33655 0.15406 1.36330 1.85262 2.43967 2.74168 2.98795 3.04037 3.35016 3.39202 3.41907 3.69250 3.82304 4.01060 4.24131 4.41675 4.45604 4.47846 4.63919 4.91144 5.03829 5.15584 5.31829 5.36327 5.43569 5.62176 5.66083 5.71991 5.74970 5.87817 5.98097 5.99683 6.07091 6.13990 6.24041 6.50695 6.68920 6.80954 7.06003 7.19129 7.26671 7.36246 7.40730 7.47854 7.80493 7.99176 8.07298 8.16098 8.51372 9.06322 9.63204 11.11176 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.002758 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.419568 B =10150.759901 C =11279.711908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.171 4.171 3 C 0.089 3.911 4 N -0.520 5.520 5 C 0.193 3.807 6 C -0.502 4.502 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.110 3.890 15 C 0.379 3.621 16 N -0.509 5.509 17 C 0.402 3.598 18 O -0.469 6.469 19 C -0.162 4.162 20 C -0.071 4.071 21 C -0.091 4.091 22 C -0.090 4.090 23 C 0.528 3.472 24 O -0.503 6.503 25 O -0.509 6.509 26 C -0.022 4.022 27 C 0.163 3.837 28 N -0.496 5.496 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.011 0.989 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.413 0.587 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.417 0.583 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.905 -1.704 -20.949 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.191 4.191 3 C -0.039 4.039 4 N -0.244 5.244 5 C 0.068 3.932 6 C -0.541 4.541 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.019 4.019 15 C 0.111 3.889 16 N -0.233 5.233 17 C 0.199 3.801 18 O -0.277 6.277 19 C -0.168 4.168 20 C -0.092 4.092 21 C -0.109 4.109 22 C -0.094 4.094 23 C 0.371 3.629 24 O -0.392 6.392 25 O -0.322 6.322 26 C -0.041 4.041 27 C 0.036 3.964 28 N -0.212 5.212 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.274 0.726 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.276 0.724 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 14.524 -2.091 -19.598 24.483 hybrid contribution -0.692 0.431 -0.987 1.280 sum 13.832 -1.659 -20.585 24.856 Atomic orbital electron populations 1.23671 0.96036 1.01029 1.01225 1.23432 0.96484 0.99657 0.99517 1.21274 0.94600 0.94713 0.93279 1.62461 1.13767 1.43237 1.04970 1.19811 0.92263 0.97526 0.83560 1.21028 1.23771 0.98485 1.10792 0.92116 1.24937 0.96892 0.96421 0.96142 1.69941 1.37942 1.29636 1.16173 0.86602 0.79810 0.83717 0.77504 1.20350 1.21409 1.20248 1.20964 0.93071 0.95544 0.92365 1.23217 0.88031 0.85365 0.92331 1.67846 1.04426 1.15422 1.35614 1.19686 0.84386 0.89624 0.86387 1.84603 1.27972 1.22729 1.92428 1.19790 0.98329 1.03343 0.95348 1.20799 0.98787 0.98756 0.90822 1.21041 0.95624 0.95987 0.98294 1.19031 0.97995 1.02125 0.90255 1.20780 0.80035 0.77064 0.85021 1.90938 1.26755 1.36093 1.85380 1.84528 1.54189 1.72716 1.20727 1.21187 0.98560 0.95833 0.88493 1.18704 0.90295 0.93936 0.93506 1.68773 1.30579 1.23129 0.98743 0.89676 0.88661 0.88301 0.89866 0.92119 0.97118 0.95538 0.92925 0.92050 0.88309 0.72604 0.83688 0.83672 0.72370 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 14.32 29.01 0.42 -2.91 16 2 C -0.17 -3.22 7.42 -36.03 -0.27 -3.49 16 3 C 0.09 1.77 5.43 -4.97 -0.03 1.75 16 4 N -0.52 -11.12 4.65 -238.96 -1.11 -12.23 16 5 C 0.19 4.89 4.58 -4.98 -0.02 4.86 16 6 C -0.50 -13.88 8.52 -34.44 -0.29 -14.17 16 7 H 0.06 1.68 7.66 -52.49 -0.40 1.28 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 10 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.11 2.03 5.20 -4.98 -0.03 2.01 16 15 C 0.38 6.38 6.42 -157.22 -1.01 5.37 16 16 N -0.51 -8.23 10.30 -10.38 -0.11 -8.33 16 17 C 0.40 5.12 7.89 -16.06 -0.13 4.99 16 18 O -0.47 -4.45 12.91 -17.54 -0.23 -4.67 16 19 C -0.16 -1.88 5.76 -106.63 -0.61 -2.50 16 20 C -0.07 -0.58 9.58 -39.67 -0.38 -0.96 16 21 C -0.09 -0.70 9.52 -39.53 -0.38 -1.07 16 22 C -0.09 -0.86 5.87 -104.98 -0.62 -1.48 16 23 C 0.53 4.85 8.27 34.68 0.29 5.14 16 24 O -0.50 -6.19 17.09 -19.23 -0.33 -6.51 16 25 O -0.51 -2.89 12.64 -40.48 -0.51 -3.40 16 26 C -0.02 -0.26 9.58 -38.74 -0.37 -0.63 16 27 C 0.16 2.19 6.61 -84.86 -0.56 1.63 16 28 N -0.50 -7.83 9.08 -8.81 -0.08 -7.91 16 29 H 0.08 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.10 1.78 7.84 -52.49 -0.41 1.37 16 31 H 0.10 1.78 6.80 -52.49 -0.36 1.43 16 32 H 0.08 1.79 7.04 -51.93 -0.37 1.42 16 33 H 0.06 1.14 6.30 -51.93 -0.33 0.82 16 34 H 0.01 0.30 6.71 -51.93 -0.35 -0.05 16 35 H 0.03 0.71 7.81 -51.93 -0.41 0.31 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.06 1.09 6.35 -51.93 -0.33 0.76 16 38 H 0.10 1.81 7.86 -51.93 -0.41 1.40 16 39 H 0.41 1.85 9.06 45.56 0.41 2.27 16 40 H 0.15 0.79 7.70 -52.49 -0.40 0.38 16 41 H 0.15 0.75 7.56 -52.49 -0.40 0.36 16 42 H 0.42 0.56 9.11 45.56 0.42 0.97 16 43 H 0.16 1.88 7.62 -52.49 -0.40 1.48 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -34.77 373.03 -8.40 -43.17 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -3.29 Total: 3.24 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -4.09 Total: 0.06 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.56 Total: -54.08 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -1.07 Total: -14.59 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.77 -8.40 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.252 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds