Wall clock time and date at job start Wed Apr 1 2020 03:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00475 * 2 1 4 4 H 1.48490 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46835 * 299.99871 * 3 2 1 6 6 H 1.48503 * 109.47019 * 59.99699 * 3 2 1 7 7 C 1.38816 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99842 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99785 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.65041 * 345.83486 * 9 7 2 11 11 C 1.54914 * 104.83174 * 204.14735 * 10 9 7 12 12 C 1.55157 * 101.58030 * 322.98821 * 11 10 9 13 13 C 1.47025 * 125.64497 * 165.85688 * 9 7 2 14 14 H 1.08996 * 110.01327 * 59.42906 * 13 9 7 15 15 C 1.53008 * 109.88169 * 298.33722 * 13 9 7 16 16 N 1.46499 * 109.46677 * 176.73560 * 15 13 9 17 17 C 1.34779 * 119.99540 * 175.43369 * 16 15 13 18 18 O 1.21555 * 120.00043 * 0.27673 * 17 16 15 19 19 C 1.47881 * 120.00046 * 180.27425 * 17 16 15 20 20 C 1.38810 * 119.32986 * 179.97438 * 19 17 16 21 21 C 1.39855 * 118.37758 * 179.97438 * 20 19 17 22 22 C 1.41394 * 122.95816 * 179.97438 * 21 20 19 23 23 O 1.35229 * 120.99217 * 359.97438 * 22 21 20 24 24 N 1.32493 * 118.01602 * 180.02562 * 22 21 20 25 25 C 1.32360 * 121.48477 * 359.97438 * 24 22 21 26 26 N 1.31303 * 123.09352 * 0.02562 * 25 24 22 27 27 C 1.33691 * 120.36923 * 359.95662 * 26 25 24 28 28 C 1.40616 * 122.61569 * 180.02562 * 27 26 25 29 29 N 1.30917 * 120.15469 * 179.78588 * 28 27 26 30 30 H 0.97006 * 119.99671 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36762 * 85.31171 * 10 9 7 32 32 H 1.09001 * 110.46247 * 323.03347 * 10 9 7 33 33 H 1.09002 * 111.00267 * 204.92048 * 11 10 9 34 34 H 1.08997 * 111.00490 * 81.06823 * 11 10 9 35 35 H 1.08998 * 110.72047 * 277.13734 * 12 11 10 36 36 H 1.09001 * 110.71667 * 153.86270 * 12 11 10 37 37 H 1.08998 * 109.46479 * 56.73866 * 15 13 9 38 38 H 1.08998 * 109.46991 * 296.73748 * 15 13 9 39 39 H 0.96995 * 120.00223 * 355.71236 * 16 15 13 40 40 H 1.08002 * 120.80970 * 0.02562 * 20 19 17 41 41 H 0.96698 * 113.99618 * 90.00571 * 23 22 21 42 42 H 1.07998 * 118.45518 * 179.97438 * 25 24 22 43 43 H 1.08000 * 119.92459 * 0.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 -0.1100 -2.5511 0.2954 11 6 -0.2527 -4.0174 0.7744 12 6 0.7654 -4.7452 -0.1429 13 6 1.9001 -3.7096 -0.2897 14 1 2.6994 -3.9328 0.4170 15 6 2.4468 -3.7359 -1.7185 16 7 3.0862 -5.0292 -1.9730 17 6 3.5608 -5.3161 -3.2014 18 8 3.4627 -4.4999 -4.0968 19 6 4.2008 -6.6240 -3.4599 20 6 4.6842 -6.9051 -4.7303 21 6 5.2862 -8.1477 -4.9525 22 6 5.8106 -8.5351 -6.2072 23 8 5.7524 -7.7044 -7.2727 24 7 6.3598 -9.7366 -6.3081 25 6 6.4215 -10.5577 -5.2718 26 7 5.9513 -10.2507 -4.0849 27 6 5.3765 -9.0625 -3.8722 28 6 4.8579 -8.6846 -2.6210 29 7 4.3085 -7.5065 -2.4654 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7025 -2.3867 -0.6046 32 1 -0.4183 -1.8632 1.0827 33 1 -1.2642 -4.3869 0.6056 34 1 0.0272 -4.1148 1.8233 35 1 0.3198 -4.9691 -1.1121 36 1 1.1323 -5.6543 0.3334 37 1 3.1791 -2.9379 -1.8420 38 1 1.6283 -3.5902 -2.4234 39 1 3.1644 -5.6805 -1.2585 40 1 4.5982 -6.1816 -5.5276 41 1 6.5197 -7.1224 -7.3600 42 1 6.8795 -11.5260 -5.4091 43 1 4.9164 -9.3663 -1.7853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028289921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:40 Heat of formation + Delta-G solvation = 35.977317 kcal Electronic energy + Delta-G solvation = -28729.692610 eV Core-core repulsion = 24583.488537 eV Total energy + Delta-G solvation = -4146.204073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.27075 -40.07412 -38.78378 -38.22523 -37.55403 -34.43791 -33.92912 -33.08496 -32.48075 -31.17969 -29.66133 -28.70400 -26.20981 -25.89265 -24.80523 -23.84364 -23.29856 -21.50902 -20.27715 -20.06994 -19.68937 -19.09199 -18.69289 -17.68890 -16.77056 -16.51825 -16.19720 -15.69778 -15.52098 -15.13535 -14.94670 -14.84055 -14.73253 -14.49200 -14.07026 -13.87276 -13.56281 -13.32706 -12.92114 -12.80498 -12.09942 -11.90008 -11.77431 -11.47984 -11.43018 -11.33493 -10.95902 -10.82583 -10.78520 -10.72813 -10.26450 -10.20138 -10.06421 -9.91806 -9.83398 -9.73777 -9.66146 -9.06879 -8.70261 -8.59359 -6.85988 -5.78249 -3.14914 -0.68935 -0.16846 0.97286 2.04836 2.54495 2.99757 3.09044 3.34904 3.38652 3.44873 3.46761 3.49876 3.54180 3.72990 3.98756 4.12261 4.46190 4.52740 4.56879 4.87841 5.14343 5.17087 5.32417 5.40121 5.48969 5.51055 5.61536 5.70224 5.81160 6.03841 6.11190 6.20279 6.25276 6.45252 6.51077 6.57807 6.64394 6.67782 6.77178 7.02310 7.10583 7.36549 7.51119 7.59885 7.71197 7.78382 8.23116 8.29870 9.15868 9.76381 10.43600 11.33613 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.002268 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.779432 B =12343.596804 C =13251.183857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.106 3.894 16 N -0.697 5.697 17 C 0.562 3.438 18 O -0.533 6.533 19 C 0.062 3.938 20 C -0.048 4.048 21 C -0.161 4.161 22 C 0.423 3.577 23 O -0.464 6.464 24 N -0.536 5.536 25 C 0.329 3.671 26 N -0.495 5.495 27 C 0.128 3.872 28 C 0.158 3.842 29 N -0.428 5.428 30 H 0.253 0.747 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.407 0.593 40 H 0.165 0.835 41 H 0.419 0.581 42 H 0.208 0.792 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.624 -21.476 -8.032 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.019 4.019 16 N -0.347 5.347 17 C 0.345 3.655 18 O -0.410 6.410 19 C -0.065 4.065 20 C -0.072 4.072 21 C -0.172 4.172 22 C 0.221 3.779 23 O -0.273 6.273 24 N -0.262 5.262 25 C 0.040 3.960 26 N -0.211 5.211 27 C -0.002 4.002 28 C -0.017 4.017 29 N -0.139 5.139 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.242 0.758 40 H 0.183 0.817 41 H 0.281 0.719 42 H 0.225 0.775 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 10.952 -21.318 -7.990 25.264 hybrid contribution 0.875 1.292 -0.630 1.683 sum 11.827 -20.026 -8.621 24.804 Atomic orbital electron populations 1.69952 1.05018 1.25205 1.55920 1.24918 0.95689 0.97885 1.01418 0.86069 0.78915 0.83667 0.77260 1.20375 1.21604 1.21706 1.19036 0.90434 0.82160 1.44555 0.90562 1.44495 1.06138 1.00847 1.79777 1.21467 0.84681 0.90285 0.98874 1.23010 0.97530 0.99549 0.98640 1.22611 0.97030 0.97035 0.99771 1.21132 0.94602 0.88101 0.91825 0.94306 1.22383 0.97308 0.82443 0.99758 1.46010 1.57787 1.19796 1.11086 1.17673 0.79283 0.84820 0.83733 1.90831 1.57762 1.48078 1.44319 1.21310 0.99924 0.95257 0.89975 1.22102 0.92030 0.94808 0.98221 1.19745 1.04637 0.97583 0.95254 1.19575 0.86807 0.87592 0.83929 1.84624 1.47162 1.51532 1.43945 1.68064 1.18845 1.04626 1.34679 1.24953 0.90898 0.98110 0.82035 1.68713 1.11228 1.16631 1.24521 1.20120 0.95381 0.89759 0.94989 1.23090 0.91841 0.92343 0.94436 1.67459 1.11496 1.01999 1.32993 0.93637 0.95633 0.90844 0.92340 0.92260 0.91876 0.92214 0.91090 0.91277 0.75769 0.81702 0.71880 0.77537 0.79600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.45 10.56 55.49 0.59 -25.87 16 2 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.33 9.75 -15.06 -0.15 -6.47 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.59 -14.44 3.13 -162.57 -0.51 -14.95 16 10 C 0.17 4.06 5.42 -2.53 -0.01 4.05 16 11 C -0.15 -2.71 7.09 -24.58 -0.17 -2.88 16 12 C -0.13 -2.11 6.13 -24.90 -0.15 -2.26 16 13 C 0.15 2.97 3.21 -66.95 -0.21 2.76 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 15 C 0.11 2.02 5.08 -4.04 -0.02 2.00 16 16 N -0.70 -10.76 5.33 -61.23 -0.33 -11.09 16 17 C 0.56 8.83 7.80 -12.31 -0.10 8.74 16 18 O -0.53 -10.08 16.28 5.32 0.09 -10.00 16 19 C 0.06 0.77 6.74 -83.03 -0.56 0.21 16 20 C -0.05 -0.52 9.23 -38.77 -0.36 -0.88 16 21 C -0.16 -1.56 5.76 -106.71 -0.61 -2.17 16 22 C 0.42 3.65 7.91 -16.07 -0.13 3.53 16 23 O -0.46 -3.18 13.04 -17.38 -0.23 -3.40 16 24 N -0.54 -4.59 10.42 -14.23 -0.15 -4.73 16 25 C 0.33 2.34 12.21 -92.09 -1.12 1.22 16 26 N -0.49 -4.22 10.46 -12.54 -0.13 -4.35 16 27 C 0.13 1.21 6.64 -84.78 -0.56 0.65 16 28 C 0.16 1.40 11.26 -17.04 -0.19 1.20 16 29 N -0.43 -4.69 9.43 -9.47 -0.09 -4.78 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.07 1.93 6.90 -51.93 -0.36 1.58 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.05 7.80 -51.93 -0.40 0.64 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.51 7.90 -51.93 -0.41 1.10 16 38 H 0.07 1.46 8.06 -51.93 -0.42 1.04 16 39 H 0.41 5.42 7.64 -40.82 -0.31 5.11 16 40 H 0.17 1.69 7.38 -52.49 -0.39 1.30 16 41 H 0.42 0.69 9.06 45.56 0.41 1.10 16 42 H 0.21 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -34.21 366.85 -9.09 -43.29 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.38 Total: 3.90 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: -4.45 Total: 9.53 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -0.62 Total: -65.77 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.14 Total: -13.40 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.21 -9.09 -43.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028289921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.269 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds