Wall clock time and date at job start Wed Apr 1 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34784 * 119.99987 * 2 1 4 4 O 1.21526 * 120.00128 * 184.65201 * 3 2 1 5 5 C 1.48017 * 119.99618 * 4.64932 * 3 2 1 6 6 C 1.39468 * 119.92437 * 320.21145 * 5 3 2 7 7 C 1.38448 * 120.30425 * 180.26417 * 6 5 3 8 8 C 1.38583 * 119.90488 * 359.52091 * 7 6 5 9 9 C 1.41003 * 120.05814 * 0.48066 * 8 7 6 10 10 C 1.38429 * 119.95708 * 359.75826 * 9 8 7 11 11 C 1.47836 * 105.88738 * 179.76139 * 9 8 7 12 12 O 1.21448 * 125.68904 * 180.02562 * 11 9 8 13 13 N 1.34508 * 108.62006 * 359.97438 * 11 9 8 14 14 C 1.34509 * 111.11121 * 0.02562 * 13 11 9 15 15 O 1.21421 * 125.72431 * 179.97438 * 14 13 11 16 16 C 1.46494 * 120.00338 * 179.97438 * 2 1 3 17 17 H 1.09003 * 110.64278 * 181.68995 * 16 2 1 18 18 C 1.55160 * 110.71982 * 305.02466 * 16 2 1 19 19 C 1.54917 * 101.58269 * 153.86337 * 18 16 2 20 20 N 1.47429 * 104.82983 * 322.99172 * 19 18 16 21 21 C 1.36936 * 125.64572 * 204.08807 * 20 19 18 22 22 H 1.08003 * 119.99484 * 164.32053 * 21 20 19 23 23 C 1.38808 * 120.00168 * 344.32191 * 21 20 19 24 24 N 1.31621 * 120.00225 * 350.48780 * 23 21 20 25 25 Si 1.86804 * 119.99840 * 170.48718 * 23 21 20 26 26 H 1.48492 * 109.47150 * 94.95649 * 25 23 21 27 27 H 1.48504 * 109.47040 * 214.95748 * 25 23 21 28 28 H 1.48498 * 109.47063 * 334.95444 * 25 23 21 29 29 C 1.47020 * 108.70382 * 24.12866 * 20 19 18 30 30 H 1.09001 * 109.46896 * 86.35504 * 1 2 3 31 31 H 1.09006 * 109.46755 * 206.35414 * 1 2 3 32 32 H 1.09002 * 109.46847 * 326.35174 * 1 2 3 33 33 H 1.07998 * 119.84384 * 0.04797 * 6 5 3 34 34 H 1.08006 * 120.04427 * 179.68215 * 7 6 5 35 35 H 1.07997 * 120.18619 * 179.97438 * 10 9 8 36 36 H 0.96998 * 124.43920 * 179.97438 * 13 11 9 37 37 H 1.08999 * 111.00542 * 271.93755 * 18 16 2 38 38 H 1.08994 * 111.00343 * 35.79367 * 18 16 2 39 39 H 1.08994 * 110.36613 * 204.15408 * 19 18 16 40 40 H 1.09006 * 110.45831 * 81.87335 * 19 18 16 41 41 H 0.97000 * 119.99991 * 179.97438 * 24 23 21 42 42 H 1.08994 * 109.88199 * 239.52129 * 29 20 19 43 43 H 1.09003 * 109.88590 * 118.35589 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3512 1.1690 -0.0854 5 6 1.4024 2.4470 0.1039 6 6 0.1989 2.6146 -0.5806 7 6 -0.4938 3.8102 -0.4934 8 6 0.0050 4.8424 0.2853 9 6 1.2212 4.6791 0.9797 10 6 1.9150 3.4847 0.8874 11 6 1.4547 5.9532 1.6922 12 8 2.4072 6.2033 2.4030 13 7 0.4370 6.7898 1.4208 14 6 -0.4589 6.2126 0.6002 15 8 -1.4774 6.7287 0.1870 16 6 2.1975 -1.2686 0.0006 17 1 3.2727 -1.0916 0.0306 18 6 1.7507 -2.1600 1.1894 19 6 2.0639 -3.5780 0.6498 20 7 1.7325 -3.5173 -0.7854 21 6 1.4005 -4.5867 -1.5737 22 1 0.9332 -4.4252 -2.5339 23 6 1.6647 -5.8781 -1.1387 24 7 2.3978 -6.0733 -0.0631 25 14 0.9796 -7.3391 -2.0798 26 1 1.9999 -7.8323 -3.0394 27 1 0.6319 -8.4232 -1.1263 28 1 -0.2377 -6.9233 -2.8218 29 6 1.8183 -2.1187 -1.2304 30 1 -0.3633 0.0653 -1.0256 31 1 -0.3633 -0.9209 0.4562 32 1 -0.3633 0.8555 0.5694 33 1 -0.1928 1.8093 -1.1843 34 1 -1.4228 3.9373 -1.0293 35 1 2.8471 3.3558 1.4173 36 1 0.3590 7.6907 1.7716 37 1 2.3373 -1.9434 2.0822 38 1 0.6850 -2.0434 1.3861 39 1 1.4431 -4.3203 1.1514 40 1 3.1196 -3.8128 0.7858 41 1 2.5820 -6.9757 0.2410 42 1 0.8542 -1.7945 -1.6220 43 1 2.5849 -2.0205 -1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033595521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:25 Heat of formation + Delta-G solvation = -6.101696 kcal Electronic energy + Delta-G solvation = -29034.134783 eV Core-core repulsion = 24853.813276 eV Total energy + Delta-G solvation = -4180.321507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -42.72753 -40.55028 -39.14151 -38.50357 -37.37808 -36.16223 -35.05310 -32.53523 -31.75579 -31.55162 -29.28804 -27.85962 -27.06970 -25.72607 -25.21732 -24.27941 -23.00661 -21.04363 -20.89627 -20.37430 -19.16998 -18.52809 -18.31103 -17.19970 -17.04886 -16.91061 -16.65862 -15.97057 -15.73165 -15.49062 -14.83272 -14.76819 -14.55054 -14.51920 -14.43367 -14.18482 -13.67272 -13.36725 -13.07115 -12.98058 -12.58856 -12.47996 -12.09056 -11.97291 -11.69277 -11.17278 -11.05286 -10.94519 -10.93329 -10.93093 -10.86680 -10.57538 -10.14397 -10.04700 -9.96352 -9.80243 -9.76955 -9.67433 -8.66477 -8.57770 -6.84681 -5.83045 -3.18611 -0.61117 0.35631 1.29053 2.03288 2.40986 2.48759 2.73290 3.12527 3.17348 3.35040 3.41012 3.42725 3.72683 4.01864 4.08286 4.40329 4.44085 4.61037 4.68672 4.98777 5.18217 5.20032 5.22479 5.32136 5.33550 5.39803 5.43200 5.48761 5.54338 5.59812 5.61646 5.78199 5.85167 5.97014 6.04380 6.22658 6.39488 6.42955 6.61281 6.62173 6.81002 7.20258 7.29207 7.33672 7.52215 7.69098 7.97411 8.18202 9.10372 9.72268 10.40288 11.30325 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.027897 B = 0.002153 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.460747 B =13001.233610 C =13617.661506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.590 5.590 3 C 0.553 3.447 4 O -0.525 6.525 5 C -0.095 4.095 6 C -0.069 4.069 7 C -0.047 4.047 8 C -0.127 4.127 9 C -0.149 4.149 10 C 0.007 3.993 11 C 0.581 3.419 12 O -0.458 6.458 13 N -0.680 5.680 14 C 0.580 3.420 15 O -0.461 6.461 16 C 0.126 3.874 17 H 0.108 0.892 18 C -0.154 4.154 19 C 0.176 3.824 20 N -0.599 5.599 21 C -0.234 4.234 22 H 0.075 0.925 23 C -0.003 4.003 24 N -0.914 5.914 25 Si 0.911 3.089 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.129 3.871 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.431 0.569 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.254 0.746 42 H 0.027 0.973 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.547 22.607 2.991 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.321 5.321 3 C 0.340 3.660 4 O -0.402 6.402 5 C -0.098 4.098 6 C -0.087 4.087 7 C -0.066 4.066 8 C -0.131 4.131 9 C -0.153 4.153 10 C -0.012 4.012 11 C 0.369 3.631 12 O -0.328 6.328 13 N -0.346 5.346 14 C 0.367 3.633 15 O -0.331 6.331 16 C 0.024 3.976 17 H 0.126 0.874 18 C -0.193 4.193 19 C 0.050 3.950 20 N -0.326 5.326 21 C -0.362 4.362 22 H 0.093 0.907 23 C -0.200 4.200 24 N -0.560 5.560 25 Si 0.741 3.259 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.205 1.205 29 C 0.003 3.997 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.176 0.824 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.273 0.727 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.906 22.656 3.078 23.884 hybrid contribution -0.396 -0.346 -0.316 0.614 sum -7.302 22.310 2.761 23.636 Atomic orbital electron populations 1.22199 0.79714 1.04148 1.01830 1.47786 1.07140 1.05788 1.71367 1.18141 0.87103 0.83199 0.77594 1.90829 1.13215 1.86796 1.49365 1.20227 0.95579 0.95098 0.98946 1.22077 0.92409 0.97591 0.96660 1.20749 1.00030 0.90236 0.95571 1.20648 0.96668 0.95049 1.00718 1.20325 0.97502 0.95444 1.02037 1.20719 0.98296 0.88510 0.93685 1.18234 0.81115 0.84276 0.79518 1.90882 1.28732 1.78902 1.34269 1.44425 1.23677 1.19113 1.47435 1.18338 0.82047 0.85860 0.77029 1.90861 1.22645 1.69273 1.50361 1.22339 0.97246 0.80740 0.97301 0.87449 1.23399 1.00742 0.98665 0.96537 1.21334 0.99232 0.90282 0.84133 1.44391 1.81568 1.00875 1.05734 1.18961 1.32715 0.83848 1.00711 0.90750 1.24917 0.99112 0.97586 0.98429 1.69945 1.40254 1.20424 1.25376 0.86132 0.78588 0.82363 0.78821 1.21497 1.21572 1.20522 1.21535 0.97985 0.86466 0.93762 0.91832 0.89435 0.90929 0.82446 0.83159 0.83010 0.72678 0.91679 0.91526 0.91929 0.94643 0.93559 0.95487 0.95470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 7.68 59.85 0.46 1.06 16 2 N -0.59 -7.70 2.88 -172.88 -0.50 -8.20 16 3 C 0.55 7.34 7.34 -12.25 -0.09 7.25 16 4 O -0.53 -8.98 16.30 5.34 0.09 -8.89 16 5 C -0.10 -0.92 5.22 -104.86 -0.55 -1.47 16 6 C -0.07 -0.47 7.55 -39.05 -0.29 -0.77 16 7 C -0.05 -0.29 10.08 -39.38 -0.40 -0.69 16 8 C -0.13 -0.96 6.41 -104.70 -0.67 -1.63 16 9 C -0.15 -1.28 6.39 -104.85 -0.67 -1.95 16 10 C 0.01 0.07 9.67 -38.94 -0.38 -0.31 16 11 C 0.58 5.08 8.45 -12.45 -0.11 4.98 16 12 O -0.46 -5.28 18.04 5.41 0.10 -5.18 16 13 N -0.68 -4.48 5.76 -13.18 -0.08 -4.56 16 14 C 0.58 4.59 8.47 -12.36 -0.10 4.48 16 15 O -0.46 -4.71 18.04 5.44 0.10 -4.61 16 16 C 0.13 2.12 3.36 -66.10 -0.22 1.90 16 17 H 0.11 1.98 7.01 -51.93 -0.36 1.62 16 18 C -0.15 -2.63 6.60 -24.58 -0.16 -2.79 16 19 C 0.18 3.99 5.36 -2.52 -0.01 3.97 16 20 N -0.60 -14.53 3.39 -170.07 -0.58 -15.11 16 21 C -0.23 -6.27 10.21 -15.06 -0.15 -6.42 16 22 H 0.07 1.93 7.85 -52.48 -0.41 1.52 16 23 C 0.00 -0.08 5.38 -17.43 -0.09 -0.17 16 24 N -0.91 -26.08 10.93 55.49 0.61 -25.48 16 25 Si 0.91 21.33 29.56 -169.99 -5.03 16.31 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 C 0.13 2.55 6.88 -3.06 -0.02 2.53 16 30 H 0.06 0.50 6.81 -51.93 -0.35 0.15 16 31 H 0.09 0.92 6.11 -51.93 -0.32 0.60 16 32 H 0.07 0.50 5.79 -51.93 -0.30 0.20 16 33 H 0.16 0.84 5.35 -52.49 -0.28 0.56 16 34 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 35 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.43 1.79 8.96 -40.82 -0.37 1.43 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.04 6.12 -51.93 -0.32 0.72 16 39 H 0.06 1.56 7.34 -51.93 -0.38 1.18 16 40 H 0.04 0.89 7.94 -51.93 -0.41 0.48 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.03 0.50 7.03 -51.93 -0.36 0.13 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -33.82 358.27 -8.05 -41.86 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.70 Total: -1.52 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -3.46 Total: 9.98 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.54 Total: -53.35 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.28 Total: -18.69 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.82 -8.05 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033595521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.763 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds