Wall clock time and date at job start Wed Apr 1 2020 02:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 120.00299 * 2 1 4 4 H 1.48495 * 109.46890 * 239.99802 * 3 2 1 5 5 H 1.48502 * 109.47016 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46998 * 119.99695 * 3 2 1 7 7 C 1.38816 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99842 * 164.88457 * 7 2 1 9 9 N 1.36932 * 120.00122 * 344.89074 * 7 2 1 10 10 C 1.47622 * 120.90397 * 153.12562 * 9 7 2 11 11 C 1.53889 * 107.50295 * 132.48617 * 10 9 7 12 12 H 1.08995 * 112.09525 * 182.65682 * 11 10 9 13 13 C 1.54543 * 108.36879 * 307.00693 * 11 10 9 14 14 C 1.54286 * 104.85024 * 89.29839 * 13 11 10 15 15 C 1.54962 * 104.80734 * 359.81240 * 14 13 11 16 16 H 1.08990 * 112.25728 * 146.61150 * 15 14 13 17 17 C 1.47167 * 120.70669 * 333.80103 * 9 7 2 18 18 N 1.48310 * 104.15437 * 24.98973 * 15 14 13 19 19 C 1.34777 * 128.07655 * 139.03857 * 18 15 14 20 20 O 1.21681 * 119.99931 * 186.53372 * 19 18 15 21 21 C 1.46820 * 119.99768 * 6.53796 * 19 18 15 22 22 C 1.41296 * 126.50390 * 9.54122 * 21 19 18 23 23 N 1.30366 * 108.46523 * 180.02562 * 22 21 19 24 24 N 1.39995 * 109.30763 * 359.97438 * 23 22 21 25 25 C 1.35985 * 108.16455 * 0.02562 * 24 23 22 26 26 N 1.37175 * 120.55776 * 179.97438 * 25 24 23 27 27 H 0.96997 * 119.88667 * 180.02562 * 26 25 24 28 28 C 1.36358 * 120.23578 * 0.02562 * 26 25 24 29 29 C 1.35234 * 119.82969 * 359.73658 * 28 26 25 30 30 C 1.34857 * 131.92869 * 180.02562 * 24 23 22 31 31 O 1.21812 * 120.11654 * 0.02562 * 30 24 23 32 32 H 0.97001 * 119.99209 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.38138 * 13.37478 * 10 9 7 34 34 H 1.08997 * 110.62997 * 252.31316 * 10 9 7 35 35 H 1.09002 * 110.36073 * 208.14008 * 13 11 10 36 36 H 1.08996 * 110.36428 * 330.34196 * 13 11 10 37 37 H 1.08999 * 110.36191 * 118.84062 * 14 13 11 38 38 H 1.09002 * 110.35727 * 241.04787 * 14 13 11 39 39 H 1.09003 * 109.74759 * 107.61760 * 17 9 7 40 40 H 1.09000 * 109.79441 * 346.90767 * 17 9 7 41 41 H 1.07999 * 125.76754 * 0.03956 * 22 21 19 42 42 H 1.08001 * 120.08071 * 179.97438 * 28 26 25 43 43 H 1.08002 * 120.14988 * 180.26318 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0623 -1.2185 -0.2434 9 7 1.3611 -2.3674 0.3102 10 6 1.8339 -3.6622 -0.2181 11 6 1.8787 -4.6535 0.9581 12 1 2.2644 -5.6279 0.6587 13 6 2.7109 -4.0211 2.0965 14 6 1.6896 -3.2314 2.9413 15 6 0.3307 -3.4556 2.2312 16 1 -0.5020 -3.4870 2.9337 17 6 0.1647 -2.3563 1.1671 18 7 0.5053 -4.7403 1.5111 19 6 -0.3796 -5.7490 1.3842 20 8 -0.0410 -6.7928 0.8585 21 6 -1.7521 -5.5881 1.8802 22 6 -2.3459 -4.3900 2.3366 23 7 -3.5728 -4.6474 2.6945 24 7 -3.8384 -6.0069 2.4923 25 6 -2.7161 -6.5880 1.9902 26 7 -2.6961 -7.9279 1.6967 27 1 -1.8902 -8.3324 1.3393 28 6 -3.8051 -8.6932 1.9055 29 6 -4.9266 -8.1293 2.4088 30 6 -4.9432 -6.7505 2.7043 31 8 -5.9508 -6.2339 3.1534 32 1 -0.4849 0.8401 -0.0004 33 1 2.8337 -3.5396 -0.6347 34 1 1.1567 -4.0336 -0.9872 35 1 3.1815 -4.7981 2.6990 36 1 3.4662 -3.3505 1.6867 37 1 1.6580 -3.6201 3.9591 38 1 1.9426 -2.1711 2.9485 39 1 -0.7215 -2.5573 0.5650 40 1 0.0674 -1.3853 1.6527 41 1 -1.8648 -3.4241 2.3812 42 1 -3.7867 -9.7477 1.6731 43 1 -5.8066 -8.7315 2.5802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018036478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:16 Heat of formation + Delta-G solvation = 95.102425 kcal Electronic energy + Delta-G solvation = -30875.731555 eV Core-core repulsion = 26732.091339 eV Total energy + Delta-G solvation = -4143.640216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.84636 -40.23295 -38.96664 -38.20877 -37.58950 -34.14282 -33.14858 -31.89232 -31.39603 -30.86695 -30.48598 -29.38342 -26.38463 -24.67026 -24.47785 -23.69115 -23.26160 -22.12616 -20.89130 -20.22826 -19.32023 -18.51406 -18.29066 -17.34346 -17.20209 -16.81473 -16.24956 -15.64730 -15.37076 -15.18059 -14.56569 -14.50168 -14.09486 -13.79336 -13.74242 -13.66998 -13.44770 -13.29890 -13.08909 -12.85434 -12.66938 -12.01204 -11.96598 -11.65736 -11.19097 -11.11944 -10.87158 -10.69253 -10.57259 -10.50172 -10.36026 -10.21540 -10.05419 -9.86657 -9.74331 -9.72306 -9.63455 -8.61113 -8.44023 -8.11696 -6.77009 -5.87217 -3.30461 0.56865 0.79581 1.72679 2.06505 2.30377 3.06795 3.23736 3.33494 3.40360 3.40854 3.50881 3.86224 4.25168 4.41007 4.47243 4.55221 4.85531 4.94717 5.02950 5.17920 5.18933 5.29587 5.31798 5.38003 5.53633 5.70695 5.76808 5.87818 6.04086 6.05191 6.14117 6.23885 6.32866 6.37506 6.45318 6.52106 6.67838 6.71254 6.77384 6.91048 6.91396 7.11660 7.39521 7.65975 7.68823 8.00394 8.29594 8.43465 9.09107 9.70743 10.28529 11.20914 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.003402 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.465873 B = 8229.215735 C = 9212.067671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.585 5.585 10 C 0.136 3.864 11 C 0.119 3.881 12 H 0.090 0.910 13 C -0.111 4.111 14 C -0.111 4.111 15 C 0.082 3.918 16 H 0.092 0.908 17 C 0.167 3.833 18 N -0.596 5.596 19 C 0.616 3.384 20 O -0.578 6.578 21 C -0.291 4.291 22 C 0.121 3.879 23 N -0.262 5.262 24 N -0.358 5.358 25 C 0.362 3.638 26 N -0.587 5.587 27 H 0.446 0.554 28 C 0.189 3.811 29 C -0.309 4.309 30 C 0.564 3.436 31 O -0.491 6.491 32 H 0.256 0.744 33 H 0.064 0.936 34 H 0.022 0.978 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.027 0.973 40 H 0.097 0.903 41 H 0.220 0.780 42 H 0.190 0.810 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -17.155 5.523 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.308 5.308 10 C 0.009 3.991 11 C 0.015 3.985 12 H 0.108 0.892 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.023 4.023 16 H 0.110 0.890 17 C 0.041 3.959 18 N -0.326 5.326 19 C 0.407 3.593 20 O -0.461 6.461 21 C -0.309 4.309 22 C -0.068 4.068 23 N -0.078 5.078 24 N -0.158 5.158 25 C 0.138 3.862 26 N -0.205 5.205 27 H 0.289 0.711 28 C 0.060 3.940 29 C -0.338 4.338 30 C 0.362 3.638 31 O -0.362 6.362 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.045 0.955 40 H 0.115 0.885 41 H 0.236 0.764 42 H 0.207 0.793 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.599 -16.823 6.011 18.224 hybrid contribution 1.324 0.445 -0.632 1.533 sum -2.275 -16.378 5.378 17.388 Atomic orbital electron populations 1.69973 1.05180 1.25860 1.53885 1.25045 0.95338 0.98350 1.00673 0.86351 0.78852 0.83307 0.78117 1.20985 1.21644 1.20941 1.19119 0.92018 0.84073 1.42990 0.91379 1.44148 1.31269 1.01474 1.53938 1.21565 0.98504 0.86740 0.92316 1.22922 0.80716 0.99203 0.95624 0.89200 1.22283 0.97909 0.98621 0.96085 1.22375 0.93832 1.02002 0.96708 1.23862 0.98164 0.84529 0.95718 0.89015 1.21375 0.89151 0.95709 0.89694 1.48861 1.14929 1.17007 1.51831 1.16299 0.82390 0.82287 0.78347 1.90676 1.79599 1.27595 1.48218 1.19506 0.96414 0.91922 1.23035 1.25062 0.90382 0.99581 0.91812 1.77671 1.17092 0.88023 1.25027 1.48121 1.10640 1.08481 1.48588 1.18679 0.89027 0.84193 0.94285 1.41099 1.16355 1.04355 1.58687 0.71143 1.22413 0.84598 0.97506 0.89470 1.21652 1.01906 0.93321 1.16959 1.17132 0.81028 0.86860 0.78809 1.90911 1.30091 1.73333 1.41861 0.93354 0.91756 0.95978 0.92883 0.89841 0.92932 0.89337 0.95507 0.88481 0.76412 0.79289 0.80431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 11.08 55.49 0.61 -23.78 16 2 C 0.00 0.12 4.98 -17.43 -0.09 0.04 16 3 Si 0.90 20.38 29.58 -169.99 -5.03 15.36 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.25 -6.25 9.66 -15.06 -0.15 -6.39 16 8 H 0.07 1.65 7.87 -52.48 -0.41 1.24 16 9 N -0.59 -13.02 2.27 -170.70 -0.39 -13.41 16 10 C 0.14 2.64 6.11 -2.96 -0.02 2.62 16 11 C 0.12 1.98 4.09 -65.66 -0.27 1.71 16 12 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 13 C -0.11 -1.67 6.18 -25.25 -0.16 -1.82 16 14 C -0.11 -1.71 6.21 -25.02 -0.16 -1.86 16 15 C 0.08 1.34 3.13 -65.44 -0.20 1.14 16 16 H 0.09 1.33 4.81 -51.93 -0.25 1.08 16 17 C 0.17 3.49 4.15 -3.22 -0.01 3.48 16 18 N -0.60 -10.01 2.74 -154.25 -0.42 -10.44 16 19 C 0.62 10.36 7.88 -12.79 -0.10 10.26 16 20 O -0.58 -10.21 16.18 5.21 0.08 -10.13 16 21 C -0.29 -4.50 6.07 -104.86 -0.64 -5.14 16 22 C 0.12 1.90 10.34 -17.01 -0.18 1.73 16 23 N -0.26 -4.52 12.54 30.85 0.39 -4.13 16 24 N -0.36 -5.59 3.79 -13.82 -0.05 -5.65 16 25 C 0.36 4.94 7.79 -153.53 -1.20 3.75 16 26 N -0.59 -5.28 5.39 -11.73 -0.06 -5.35 16 27 H 0.45 3.51 7.84 -40.82 -0.32 3.19 16 28 C 0.19 1.07 11.25 -16.61 -0.19 0.88 16 29 C -0.31 -2.68 9.95 -39.60 -0.39 -3.07 16 30 C 0.56 8.25 7.70 -15.17 -0.12 8.13 16 31 O -0.49 -8.96 17.90 5.09 0.09 -8.87 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.32 7.86 -51.93 -0.41 0.92 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.51 7.85 -51.93 -0.41 1.10 16 39 H 0.03 0.62 8.03 -51.93 -0.42 0.21 16 40 H 0.10 2.24 6.27 -51.93 -0.33 1.91 16 41 H 0.22 3.21 4.63 -52.49 -0.24 2.97 16 42 H 0.19 0.01 8.06 -52.49 -0.42 -0.42 16 43 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 348.14 15.07 5.25 5.25 Total: -1.00 -33.97 348.14 -8.24 -42.21 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.86 Total: 3.49 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: -3.85 Total: 15.44 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.08 Total: -62.74 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.18 Total: -19.00 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.97 -8.24 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018036478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.314 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds