Wall clock time and date at job start Wed Apr 1 2020 04:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47395 * 2 1 4 4 O 1.21284 * 119.99900 * 359.97438 * 3 2 1 5 5 N 1.34781 * 120.00376 * 179.97438 * 3 2 1 6 6 C 1.46492 * 120.00016 * 179.97438 * 5 3 2 7 7 C 1.50705 * 109.47052 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99517 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00316 * 179.97438 * 7 6 5 10 10 C 1.47432 * 125.64722 * 359.97438 * 9 7 6 11 11 C 1.54911 * 104.83384 * 155.90544 * 10 9 7 12 12 C 1.55161 * 101.58127 * 37.00508 * 11 10 9 13 13 H 1.09007 * 110.71790 * 83.04151 * 12 11 10 14 14 N 1.46496 * 110.72361 * 206.13277 * 12 11 10 15 15 C 1.34777 * 120.00266 * 273.55396 * 14 12 11 16 16 O 1.21274 * 120.00135 * 0.27234 * 15 14 12 17 17 C 1.50706 * 119.99766 * 179.97438 * 15 14 12 18 18 S 1.81003 * 109.46851 * 179.97438 * 17 15 14 19 19 C 1.76196 * 99.99843 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99637 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00514 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99567 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46941 * 90.00284 * 23 21 19 25 25 H 1.48505 * 109.46872 * 209.99797 * 23 21 19 26 26 H 1.48493 * 109.47194 * 329.99916 * 23 21 19 27 27 C 1.47019 * 125.65147 * 180.02562 * 9 7 6 28 28 H 1.08996 * 109.47095 * 300.00503 * 1 2 3 29 29 H 1.09000 * 109.46799 * 60.00081 * 1 2 3 30 30 H 1.09000 * 109.47414 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47095 * 239.99497 * 2 1 3 32 32 H 1.09000 * 109.46799 * 119.99919 * 2 1 3 33 33 H 0.97004 * 119.99410 * 0.02562 * 5 3 2 34 34 H 1.08996 * 109.47511 * 60.00042 * 6 5 3 35 35 H 1.09000 * 109.47338 * 299.99878 * 6 5 3 36 36 H 1.09000 * 110.36458 * 37.06932 * 10 9 7 37 37 H 1.08996 * 110.36334 * 274.74159 * 10 9 7 38 38 H 1.09002 * 111.00460 * 278.93495 * 11 10 9 39 39 H 1.08989 * 111.00830 * 155.08195 * 11 10 9 40 40 H 0.96999 * 119.99691 * 93.54382 * 14 12 11 41 41 H 1.09000 * 109.47161 * 299.99737 * 17 15 14 42 42 H 1.09001 * 109.46740 * 59.99879 * 17 15 14 43 43 H 0.96995 * 120.00407 * 179.97438 * 22 21 19 44 44 H 1.09004 * 109.88378 * 61.61123 * 27 9 7 45 45 H 1.08999 * 109.88735 * 300.44900 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0482 0.0000 7 6 5.3529 3.0482 0.0013 8 8 5.9592 1.9978 0.0022 9 7 6.0268 4.2153 0.0006 10 6 5.4189 5.5585 -0.0021 11 6 6.5000 6.4843 0.6094 12 6 7.8008 5.8714 0.0265 13 1 7.9865 6.2464 -0.9800 14 7 8.9426 6.1513 0.9006 15 6 9.6285 7.3035 0.7652 16 8 9.2975 8.1108 -0.0771 17 6 10.8028 7.5916 1.6648 18 16 11.5085 9.2029 1.2383 19 6 12.8231 9.2806 2.4089 20 1 12.9785 8.4665 3.1013 21 6 13.6583 10.3887 2.4418 22 7 13.4681 11.3817 1.5989 23 14 15.0516 10.4715 3.6834 24 1 16.2769 9.8755 3.0928 25 1 15.3132 11.8891 4.0401 26 1 14.6724 9.7157 4.9041 27 6 7.4898 4.3600 0.0012 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9878 0.9297 0.0005 34 1 3.4821 3.5626 0.8894 35 1 3.4830 3.5615 -0.8905 36 1 4.5189 5.5687 0.6127 37 1 5.1869 5.8677 -1.0212 38 1 6.4942 6.4259 1.6978 39 1 6.3685 7.5130 0.2742 40 1 9.2049 5.5074 1.5770 41 1 10.4709 7.6033 2.7030 42 1 11.5592 6.8178 1.5338 43 1 14.0515 12.1562 1.6222 44 1 7.9072 3.9106 -0.8999 45 1 7.9094 3.8804 0.8855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736995148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:15 Heat of formation + Delta-G solvation = -110.182003 kcal Electronic energy + Delta-G solvation = -26245.612731 eV Core-core repulsion = 22196.221914 eV Total energy + Delta-G solvation = -4049.390816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.92297 -40.03324 -39.25108 -37.69703 -34.94036 -34.31957 -33.26973 -32.46789 -31.42576 -29.85316 -29.15487 -27.54556 -25.52516 -24.62879 -23.52473 -21.68440 -20.86106 -20.59443 -19.88437 -18.19513 -17.90950 -17.26083 -16.93115 -16.65885 -16.46692 -16.11851 -15.67340 -15.37263 -14.99704 -14.84109 -14.76256 -14.24574 -14.02193 -13.93060 -13.76397 -13.32384 -13.22307 -12.94114 -12.78011 -12.68956 -12.62588 -12.46115 -12.21695 -12.08894 -11.74035 -11.63854 -11.25184 -11.09427 -11.06331 -10.79899 -10.50781 -10.38242 -9.86217 -9.68050 -9.54863 -9.24935 -9.11414 -9.04535 -8.29603 -6.55057 -6.25678 -3.96750 2.00016 2.09729 2.17548 2.78530 2.94176 2.98952 3.19862 3.25236 3.28831 3.61284 3.77853 4.13959 4.16676 4.24096 4.31839 4.58918 4.59750 4.68689 4.76580 4.80607 4.81952 4.85727 5.05872 5.07956 5.09867 5.09967 5.32163 5.34411 5.43362 5.46495 5.53830 5.61192 5.72524 5.74878 5.81038 5.83291 5.85921 6.07375 6.45055 6.86933 6.98484 7.48960 7.53869 7.56283 7.72654 8.31246 8.46581 9.19931 10.81741 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.041044 B = 0.001481 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.038516 B =18897.400711 C =19144.143535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.514 3.486 4 O -0.541 6.541 5 N -0.722 5.722 6 C 0.105 3.895 7 C 0.526 3.474 8 O -0.538 6.538 9 N -0.612 5.612 10 C 0.094 3.906 11 C -0.146 4.146 12 C 0.138 3.862 13 H 0.107 0.893 14 N -0.731 5.731 15 C 0.536 3.464 16 O -0.513 6.513 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.073 0.927 21 C 0.075 3.925 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.104 3.896 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.413 0.587 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.400 0.600 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.269 0.731 44 H 0.081 0.919 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.939 -21.848 -2.426 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.417 6.417 5 N -0.378 5.378 6 C -0.023 4.023 7 C 0.314 3.686 8 O -0.415 6.415 9 N -0.346 5.346 10 C -0.028 4.028 11 C -0.185 4.185 12 C 0.032 3.968 13 H 0.125 0.875 14 N -0.386 5.386 15 C 0.322 3.678 16 O -0.387 6.387 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.019 4.019 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.250 0.750 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.235 0.765 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.696 -20.276 -3.908 30.684 hybrid contribution 1.843 -1.401 2.125 3.143 sum -20.852 -21.677 -1.784 30.131 Atomic orbital electron populations 1.21540 0.92760 1.01778 1.03451 1.21623 0.98769 0.93181 1.04706 1.20863 0.81399 0.92267 0.75395 1.90723 1.55260 1.46548 1.49215 1.45804 1.07834 1.08072 1.76111 1.21008 0.90430 0.85829 1.05010 1.20148 0.89554 0.82558 0.76356 1.90720 1.69895 1.30440 1.50432 1.48305 1.07399 1.06042 1.72893 1.22534 0.97326 0.80915 1.02064 1.23269 0.93416 1.00185 1.01638 1.21825 0.86096 0.92620 0.96298 0.87518 1.45975 1.32121 1.21965 1.38555 1.20343 0.83015 0.80416 0.83984 1.90707 1.67451 1.45654 1.34846 1.23542 0.97949 1.07489 1.01512 1.85390 1.36290 1.13185 1.48357 1.22864 1.16575 1.07780 1.21294 0.90900 1.24985 0.97609 0.94614 0.96274 1.70007 1.37794 1.07227 1.35235 0.86171 0.81169 0.77581 0.80604 1.20244 1.20721 1.19692 1.22126 0.80291 0.96103 1.03382 0.91905 0.91912 0.91906 0.88653 0.88655 0.74960 0.88226 0.88170 0.89755 0.90128 0.89877 0.88443 0.76507 0.89102 0.89095 0.92137 0.90093 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.20 37.16 0.34 -0.37 16 2 C -0.14 -0.66 6.42 -27.88 -0.18 -0.84 16 3 C 0.51 4.06 7.83 -10.99 -0.09 3.97 16 4 O -0.54 -6.22 15.98 5.55 0.09 -6.13 16 5 N -0.72 -5.12 5.53 -61.48 -0.34 -5.46 16 6 C 0.10 0.73 5.16 -5.20 -0.03 0.71 16 7 C 0.53 4.59 7.92 -10.99 -0.09 4.50 16 8 O -0.54 -6.24 15.99 5.56 0.09 -6.15 16 9 N -0.61 -4.80 3.33 -170.52 -0.57 -5.36 16 10 C 0.09 0.58 6.69 -2.52 -0.02 0.56 16 11 C -0.15 -1.20 6.77 -24.58 -0.17 -1.37 16 12 C 0.14 1.34 3.23 -66.09 -0.21 1.12 16 13 H 0.11 1.19 7.70 -51.92 -0.40 0.79 16 14 N -0.73 -8.39 5.20 -52.03 -0.27 -8.66 16 15 C 0.54 9.04 7.85 -10.98 -0.09 8.95 16 16 O -0.51 -10.62 15.59 5.56 0.09 -10.53 16 17 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 18 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 19 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.72 13.22 55.49 0.73 -24.98 16 23 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 27 C 0.10 0.87 6.62 -3.07 -0.02 0.85 16 28 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 29 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.41 2.64 7.44 -40.82 -0.30 2.33 16 34 H 0.10 0.64 7.85 -51.93 -0.41 0.23 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.38 7.48 -51.93 -0.39 0.00 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 3.56 8.31 -40.82 -0.34 3.22 16 41 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 42 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.64 7.69 -51.93 -0.40 0.24 16 LS Contribution 395.31 15.07 5.96 5.96 Total: -1.00 -36.92 395.31 -8.43 -45.34 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.85 Total: 0.99 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.12 Total: 2.72 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.44 Total: -44.46 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.26 Total: -22.82 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.92 -8.43 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736995148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.838 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds