Wall clock time and date at job start Wed Apr 1 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.70109 * 2 1 4 4 C 1.53193 * 109.58341 * 120.35179 * 2 1 3 5 5 C 1.53040 * 109.31024 * 174.42031 * 4 2 1 6 6 C 1.53044 * 109.54248 * 298.63733 * 5 4 2 7 7 H 1.08997 * 109.49404 * 301.41899 * 6 5 4 8 8 N 1.46496 * 109.52637 * 181.33492 * 6 5 4 9 9 C 1.34774 * 120.00261 * 155.14800 * 8 6 5 10 10 O 1.21278 * 119.99495 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00058 * 179.97438 * 9 8 6 12 12 C 1.50699 * 109.47190 * 179.97438 * 11 9 8 13 13 N 1.34776 * 120.00206 * 180.02562 * 12 11 9 14 14 O 1.21284 * 119.99990 * 0.02562 * 12 11 9 15 15 C 1.53192 * 109.31009 * 61.36495 * 6 5 4 16 16 N 1.46927 * 109.58703 * 239.64385 * 2 1 3 17 17 C 1.34774 * 120.63186 * 6.88065 * 16 2 1 18 18 O 1.21284 * 120.00037 * 354.65996 * 17 16 2 19 19 C 1.50698 * 119.99949 * 174.66362 * 17 16 2 20 20 S 1.80997 * 109.46905 * 180.02562 * 19 17 16 21 21 C 1.76204 * 99.99810 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00495 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99871 * 179.97438 * 21 20 19 24 24 N 1.31631 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00066 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47378 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47275 * 119.99892 * 25 23 21 28 28 H 1.48503 * 109.47561 * 240.00063 * 25 23 21 29 29 H 1.08997 * 109.47694 * 175.85853 * 1 2 3 30 30 H 1.09001 * 109.47360 * 295.86565 * 1 2 3 31 31 H 1.09009 * 109.47145 * 55.86082 * 1 2 3 32 32 H 1.09007 * 109.49610 * 54.47748 * 4 2 1 33 33 H 1.08999 * 109.52894 * 294.39313 * 4 2 1 34 34 H 1.09003 * 109.45722 * 178.61744 * 5 4 2 35 35 H 1.09001 * 109.45967 * 58.66224 * 5 4 2 36 36 H 0.97008 * 119.99616 * 335.14497 * 8 6 5 37 37 H 1.08998 * 109.47238 * 300.00181 * 11 9 8 38 38 H 1.09000 * 109.46813 * 60.00104 * 11 9 8 39 39 H 0.96999 * 120.00163 * 0.02562 * 13 12 11 40 40 H 0.97001 * 119.99874 * 180.02562 * 13 12 11 41 41 H 1.08994 * 109.58703 * 185.57931 * 15 6 5 42 42 H 1.08994 * 109.58764 * 65.15442 * 15 6 5 43 43 H 1.09004 * 109.46768 * 299.99950 * 19 17 16 44 44 H 1.08992 * 109.47224 * 59.99782 * 19 17 16 45 45 H 0.97004 * 120.00022 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0434 -0.7293 1.2455 5 6 3.5674 -0.8480 1.1702 6 6 3.9569 -1.6658 -0.0634 7 1 3.4982 -2.6528 -0.0051 8 7 5.4141 -1.8061 -0.1177 9 6 5.9669 -2.8475 -0.7705 10 8 5.2580 -3.6687 -1.3127 11 6 7.4659 -2.9916 -0.8269 12 6 7.8226 -4.2292 -1.6092 13 7 9.1159 -4.5624 -1.7906 14 8 6.9459 -4.9255 -2.0755 15 6 3.4650 -0.9470 -1.3236 16 7 2.0225 -0.6996 -1.1945 17 6 1.1680 -1.1017 -2.1560 18 8 -0.0276 -0.9745 -1.9967 19 6 1.6981 -1.7095 -3.4290 20 16 0.3145 -2.1427 -4.5125 21 6 1.1970 -2.8107 -5.8835 22 1 2.2761 -2.8503 -5.8637 23 6 0.5053 -3.2861 -6.9890 24 7 -0.8099 -3.2384 -7.0130 25 14 1.4409 -3.9937 -8.4427 26 1 2.8993 -3.9331 -8.1697 27 1 1.0344 -5.4064 -8.6528 28 1 1.1329 -3.2035 -9.6617 29 1 -0.3634 -1.0249 -0.0742 30 1 -0.3634 0.4483 0.9247 31 1 -0.3634 0.5768 -0.8506 32 1 1.6028 -1.7253 1.2914 33 1 1.7658 -0.1673 2.1372 34 1 3.9376 -1.3448 2.0670 35 1 4.0060 0.1474 1.0994 36 1 5.9811 -1.1494 0.3162 37 1 7.8970 -2.1168 -1.3137 38 1 7.8611 -3.0756 0.1855 39 1 9.8171 -4.0058 -1.4174 40 1 9.3454 -5.3588 -2.2945 41 1 3.6518 -1.5718 -2.1970 42 1 3.9903 0.0019 -1.4316 43 1 2.3431 -0.9903 -3.9339 44 1 2.2697 -2.6069 -3.1926 45 1 -1.2933 -3.5703 -7.7858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739189607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:32 Heat of formation + Delta-G solvation = -94.854908 kcal Electronic energy + Delta-G solvation = -28269.749087 eV Core-core repulsion = 24221.022903 eV Total energy + Delta-G solvation = -4048.726184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.74728 -40.05890 -38.75489 -37.14518 -34.70205 -33.89788 -33.16991 -32.32715 -31.85127 -30.20637 -28.76063 -26.86511 -25.36864 -24.69891 -22.58462 -21.68835 -21.10573 -20.31685 -18.94773 -17.89387 -17.58484 -17.45887 -16.69564 -16.31587 -16.00630 -15.83327 -15.66053 -15.28990 -14.71502 -14.70383 -14.16480 -14.11185 -13.92476 -13.66205 -13.58030 -13.28073 -13.02343 -12.77299 -12.50450 -12.35284 -12.15087 -12.07179 -11.87334 -11.30654 -11.13737 -11.02560 -10.97675 -10.89718 -10.82719 -10.65339 -10.40907 -9.92332 -9.68974 -9.65995 -9.43097 -8.97205 -8.61759 -8.35481 -8.12313 -6.38855 -6.11991 -3.81096 2.35047 2.53319 2.58016 3.02522 3.12557 3.29591 3.33127 3.38048 3.42781 3.71097 4.22448 4.30360 4.42634 4.57010 4.59888 4.68560 4.76993 4.84451 4.91485 5.07447 5.10697 5.22529 5.23497 5.32330 5.48266 5.59408 5.63176 5.71378 5.74742 5.82346 5.92269 5.99865 6.01690 6.20981 6.29345 6.36315 6.50613 6.56691 6.90139 6.99566 7.24077 7.62362 7.71514 7.99658 8.14890 8.46871 8.66081 9.34163 10.95627 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007135 B = 0.004116 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3923.350370 B = 6801.634615 C =10472.800466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.144 3.856 3 H 0.067 0.933 4 C -0.129 4.129 5 C -0.123 4.123 6 C 0.132 3.868 7 H 0.095 0.905 8 N -0.730 5.730 9 C 0.506 3.494 10 O -0.480 6.480 11 C -0.165 4.165 12 C 0.511 3.489 13 N -0.862 5.862 14 O -0.489 6.489 15 C 0.100 3.900 16 N -0.615 5.615 17 C 0.538 3.462 18 O -0.507 6.507 19 C -0.154 4.154 20 S -0.061 6.061 21 C -0.530 4.530 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.869 5.869 25 Si 0.917 3.083 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.398 0.602 40 H 0.403 0.597 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.086 7.546 20.784 31.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 H 0.085 0.915 4 C -0.168 4.168 5 C -0.161 4.161 6 C 0.027 3.973 7 H 0.113 0.887 8 N -0.384 5.384 9 C 0.290 3.710 10 O -0.350 6.350 11 C -0.209 4.209 12 C 0.292 3.708 13 N -0.428 5.428 14 O -0.360 6.360 15 C -0.025 4.025 16 N -0.352 5.352 17 C 0.327 3.673 18 O -0.381 6.381 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.679 4.679 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.505 5.505 25 Si 0.743 3.257 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.206 1.206 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.232 0.768 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.226 0.774 40 H 0.234 0.766 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.852 6.710 20.253 28.471 hybrid contribution 3.112 -0.228 -0.873 3.240 sum 21.963 6.483 19.380 30.000 Atomic orbital electron populations 1.22226 0.92209 1.04495 1.00532 1.21254 0.96270 0.94598 0.83786 0.91483 1.21999 0.94363 1.02219 0.98179 1.21785 0.97044 1.00175 0.97131 1.21307 0.79890 1.01063 0.95071 0.88672 1.45937 1.07246 1.27950 1.57265 1.20019 0.89729 0.81787 0.79505 1.90961 1.62413 1.40095 1.41568 1.21575 0.95962 0.99598 1.03722 1.19999 0.82967 0.86729 0.81064 1.43858 1.07343 1.31630 1.59974 1.90982 1.46919 1.51360 1.46727 1.22042 0.80980 1.00286 0.99186 1.48066 1.06625 1.59714 1.20834 1.20290 0.86228 0.76929 0.83880 1.90742 1.15214 1.53471 1.78671 1.23621 1.06405 1.03138 0.97246 1.85250 1.05308 1.79450 1.13429 1.22919 0.95081 1.46790 1.03089 0.90923 1.24968 0.95007 0.95372 0.98181 1.70034 1.06022 1.44316 1.30135 0.86136 0.79762 0.78685 0.81080 1.19576 1.20547 1.20636 0.90600 0.94322 0.90656 0.90918 0.90280 0.91008 0.91205 0.76776 0.85971 0.86122 0.77446 0.76557 0.88685 0.91545 0.89596 0.89055 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.59 37.15 0.28 -1.67 16 2 C 0.14 1.74 3.49 -67.60 -0.24 1.50 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.13 -1.18 5.37 -26.61 -0.14 -1.32 16 5 C -0.12 -0.89 5.35 -26.69 -0.14 -1.04 16 6 C 0.13 1.34 2.60 -67.81 -0.18 1.16 16 7 H 0.10 1.29 7.58 -51.93 -0.39 0.90 16 8 N -0.73 -5.49 5.08 -53.69 -0.27 -5.77 16 9 C 0.51 5.44 7.79 -10.99 -0.09 5.35 16 10 O -0.48 -8.40 13.84 -18.96 -0.26 -8.66 16 11 C -0.17 -0.97 6.19 -29.04 -0.18 -1.15 16 12 C 0.51 5.08 8.09 -10.99 -0.09 4.99 16 13 N -0.86 -4.51 8.87 31.22 0.28 -4.24 16 14 O -0.49 -8.31 15.02 -18.96 -0.28 -8.59 16 15 C 0.10 1.24 5.90 -3.71 -0.02 1.22 16 16 N -0.62 -9.16 2.97 -165.23 -0.49 -9.65 16 17 C 0.54 10.74 7.62 -10.99 -0.08 10.66 16 18 O -0.51 -11.41 11.27 5.55 0.06 -11.35 16 19 C -0.15 -3.44 4.56 36.00 0.16 -3.28 16 20 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 21 C -0.53 -16.07 9.50 30.94 0.29 -15.78 16 22 H 0.07 2.14 7.80 -52.49 -0.41 1.73 16 23 C 0.07 2.21 5.49 -17.43 -0.10 2.11 16 24 N -0.87 -27.25 13.22 55.49 0.73 -26.52 16 25 Si 0.92 22.71 29.55 -169.99 -5.02 17.69 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H 0.08 1.28 6.73 -51.93 -0.35 0.93 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 1.26 6.77 -51.92 -0.35 0.90 16 32 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.40 1.36 8.60 -40.82 -0.35 1.01 16 37 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.40 0.49 8.83 -40.82 -0.36 0.13 16 40 H 0.40 2.12 8.93 -40.82 -0.36 1.76 16 41 H 0.09 1.44 5.96 -51.93 -0.31 1.13 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.81 8.11 -51.91 -0.42 1.39 16 44 H 0.09 2.06 7.47 -51.92 -0.39 1.67 16 45 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -42.91 379.67 -8.90 -51.81 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.64 Total: 0.77 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.51 Total: 2.75 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.25 Total: -46.17 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.48 Total: -28.61 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -42.91 -8.90 -51.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739189607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.046 kcal (2) G-P(sol) polarization free energy of solvation -42.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds