Wall clock time and date at job start Wed Apr 1 2020 05:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.70109 * 2 1 4 4 C 1.53193 * 109.58341 * 120.35179 * 2 1 3 5 5 C 1.53040 * 109.31024 * 174.42031 * 4 2 1 6 6 C 1.53044 * 109.54248 * 298.63733 * 5 4 2 7 7 H 1.08997 * 109.49404 * 301.41899 * 6 5 4 8 8 N 1.46496 * 109.52637 * 181.33492 * 6 5 4 9 9 C 1.34774 * 120.00261 * 155.14800 * 8 6 5 10 10 O 1.21278 * 119.99495 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00058 * 179.97438 * 9 8 6 12 12 C 1.50699 * 109.47190 * 179.97438 * 11 9 8 13 13 N 1.34776 * 120.00206 * 180.02562 * 12 11 9 14 14 O 1.21284 * 119.99990 * 0.02562 * 12 11 9 15 15 C 1.53192 * 109.31009 * 61.36495 * 6 5 4 16 16 N 1.46927 * 109.58703 * 239.64385 * 2 1 3 17 17 C 1.34774 * 120.63186 * 6.88065 * 16 2 1 18 18 O 1.21284 * 120.00037 * 354.65996 * 17 16 2 19 19 C 1.50698 * 119.99949 * 174.66362 * 17 16 2 20 20 S 1.80997 * 109.46905 * 180.02562 * 19 17 16 21 21 C 1.76204 * 99.99810 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00495 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99871 * 179.97438 * 21 20 19 24 24 N 1.31631 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00066 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47378 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47275 * 119.99892 * 25 23 21 28 28 H 1.48503 * 109.47561 * 240.00063 * 25 23 21 29 29 H 1.08997 * 109.47694 * 175.85853 * 1 2 3 30 30 H 1.09001 * 109.47360 * 295.86565 * 1 2 3 31 31 H 1.09009 * 109.47145 * 55.86082 * 1 2 3 32 32 H 1.09007 * 109.49610 * 54.47748 * 4 2 1 33 33 H 1.08999 * 109.52894 * 294.39313 * 4 2 1 34 34 H 1.09003 * 109.45722 * 178.61744 * 5 4 2 35 35 H 1.09001 * 109.45967 * 58.66224 * 5 4 2 36 36 H 0.97008 * 119.99616 * 335.14497 * 8 6 5 37 37 H 1.08998 * 109.47238 * 300.00181 * 11 9 8 38 38 H 1.09000 * 109.46813 * 60.00104 * 11 9 8 39 39 H 0.96999 * 120.00163 * 0.02562 * 13 12 11 40 40 H 0.97001 * 119.99874 * 180.02562 * 13 12 11 41 41 H 1.08994 * 109.58703 * 185.57931 * 15 6 5 42 42 H 1.08994 * 109.58764 * 65.15442 * 15 6 5 43 43 H 1.09004 * 109.46768 * 299.99950 * 19 17 16 44 44 H 1.08992 * 109.47224 * 59.99782 * 19 17 16 45 45 H 0.97004 * 120.00022 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0434 -0.7293 1.2455 5 6 3.5674 -0.8480 1.1702 6 6 3.9569 -1.6658 -0.0634 7 1 3.4982 -2.6528 -0.0051 8 7 5.4141 -1.8061 -0.1177 9 6 5.9669 -2.8475 -0.7705 10 8 5.2580 -3.6687 -1.3127 11 6 7.4659 -2.9916 -0.8269 12 6 7.8226 -4.2292 -1.6092 13 7 9.1159 -4.5624 -1.7906 14 8 6.9459 -4.9255 -2.0755 15 6 3.4650 -0.9470 -1.3236 16 7 2.0225 -0.6996 -1.1945 17 6 1.1680 -1.1017 -2.1560 18 8 -0.0276 -0.9745 -1.9967 19 6 1.6981 -1.7095 -3.4290 20 16 0.3145 -2.1427 -4.5125 21 6 1.1970 -2.8107 -5.8835 22 1 2.2761 -2.8503 -5.8637 23 6 0.5053 -3.2861 -6.9890 24 7 -0.8099 -3.2384 -7.0130 25 14 1.4409 -3.9937 -8.4427 26 1 2.8993 -3.9331 -8.1697 27 1 1.0344 -5.4064 -8.6528 28 1 1.1329 -3.2035 -9.6617 29 1 -0.3634 -1.0249 -0.0742 30 1 -0.3634 0.4483 0.9247 31 1 -0.3634 0.5768 -0.8506 32 1 1.6028 -1.7253 1.2914 33 1 1.7658 -0.1673 2.1372 34 1 3.9376 -1.3448 2.0670 35 1 4.0060 0.1474 1.0994 36 1 5.9811 -1.1494 0.3162 37 1 7.8970 -2.1168 -1.3137 38 1 7.8611 -3.0756 0.1855 39 1 9.8171 -4.0058 -1.4174 40 1 9.3454 -5.3588 -2.2945 41 1 3.6518 -1.5718 -2.1970 42 1 3.9903 0.0019 -1.4316 43 1 2.3431 -0.9903 -3.9339 44 1 2.2697 -2.6069 -3.1926 45 1 -1.2933 -3.5703 -7.7858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739189607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:29 Heat of formation + Delta-G solvation = -131.226088 kcal Electronic energy + Delta-G solvation = -28271.326260 eV Core-core repulsion = 24221.022903 eV Total energy + Delta-G solvation = -4050.303356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.77419 -41.08767 -39.67853 -38.30834 -35.68192 -34.65070 -34.61222 -34.36732 -32.68799 -30.96338 -30.29234 -28.00596 -27.65130 -25.66962 -23.54635 -22.59610 -21.97525 -21.08866 -20.41078 -19.48005 -18.54674 -18.21871 -17.83957 -17.43060 -16.95104 -16.93049 -16.76086 -16.71993 -16.43088 -15.91258 -15.60520 -15.06766 -14.95784 -14.77614 -14.57351 -14.54264 -14.39754 -14.23829 -13.67712 -13.51603 -13.26475 -13.17989 -13.12381 -12.95669 -12.89594 -12.66143 -12.29745 -12.04344 -11.92905 -11.75662 -11.67776 -11.22310 -11.20823 -10.56897 -10.56211 -10.37884 -10.31508 -10.11410 -9.51779 -8.72743 -8.40840 -6.18932 1.19123 1.35082 1.37661 1.49315 1.52827 1.68143 1.78736 1.86905 2.18682 2.22143 2.81800 2.92521 3.19578 3.57544 3.61316 3.72209 3.81950 3.86837 4.05727 4.13715 4.18634 4.23461 4.34039 4.38261 4.43309 4.46315 4.51725 4.66833 4.68765 4.82309 4.86648 5.01744 5.09095 5.17293 5.34409 5.35078 5.37957 5.51451 5.73783 5.96772 6.13682 6.23207 6.56079 6.66582 7.00203 7.13973 7.39122 7.53461 8.68971 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007135 B = 0.004116 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3923.350370 B = 6801.634615 C =10472.800466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.138 3.862 3 H 0.102 0.898 4 C -0.124 4.124 5 C -0.110 4.110 6 C 0.137 3.863 7 H 0.050 0.950 8 N -0.704 5.704 9 C 0.496 3.504 10 O -0.559 6.559 11 C -0.150 4.150 12 C 0.499 3.501 13 N -0.838 5.838 14 O -0.575 6.575 15 C 0.095 3.905 16 N -0.603 5.603 17 C 0.534 3.466 18 O -0.542 6.542 19 C -0.126 4.126 20 S -0.136 6.136 21 C -0.551 4.551 22 H 0.071 0.929 23 C 0.018 3.982 24 N -0.907 5.907 25 Si 0.997 3.003 26 H -0.265 1.265 27 H -0.271 1.271 28 H -0.264 1.264 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.425 0.575 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.421 0.579 40 H 0.404 0.596 41 H 0.058 0.942 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.333 10.026 23.123 36.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.037 3.963 3 H 0.120 0.880 4 C -0.163 4.163 5 C -0.148 4.148 6 C 0.031 3.969 7 H 0.068 0.932 8 N -0.359 5.359 9 C 0.282 3.718 10 O -0.435 6.435 11 C -0.192 4.192 12 C 0.283 3.717 13 N -0.404 5.404 14 O -0.452 6.452 15 C -0.029 4.029 16 N -0.338 5.338 17 C 0.321 3.679 18 O -0.419 6.419 19 C -0.278 4.278 20 S 0.091 5.909 21 C -0.699 4.699 22 H 0.089 0.911 23 C -0.187 4.187 24 N -0.544 5.544 25 Si 0.818 3.182 26 H -0.190 1.190 27 H -0.196 1.196 28 H -0.188 1.188 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.265 0.735 37 H 0.185 0.815 38 H 0.189 0.811 39 H 0.253 0.747 40 H 0.234 0.766 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 23.236 9.282 22.686 33.775 hybrid contribution 1.881 -0.951 -1.474 2.572 sum 25.117 8.331 21.213 33.915 Atomic orbital electron populations 1.22054 0.94206 1.01857 1.00865 1.21621 0.94806 0.96385 0.83480 0.87986 1.21988 0.95769 1.00881 0.97621 1.21762 0.95448 1.01645 0.95940 1.21077 0.81256 0.99108 0.95505 0.93181 1.45670 1.06320 1.27732 1.56216 1.20975 0.91685 0.81033 0.78088 1.90957 1.64543 1.43068 1.44942 1.21657 0.92249 0.99033 1.06282 1.20808 0.83217 0.87255 0.80379 1.43699 1.06653 1.31508 1.58528 1.90965 1.49484 1.54292 1.50465 1.22260 0.79581 1.01730 0.99304 1.48045 1.07202 1.58203 1.20321 1.19902 0.86292 0.77485 0.84205 1.90751 1.16592 1.55260 1.79328 1.23411 1.03431 1.03209 0.97703 1.85264 1.10153 1.80010 1.15467 1.23178 0.95047 1.47778 1.03891 0.91127 1.26085 0.96046 0.95244 1.01340 1.70170 1.07868 1.44926 1.31402 0.84943 0.78220 0.78100 0.76912 1.18950 1.19588 1.18828 0.94306 0.90832 0.93785 0.93543 0.86740 0.88700 0.87496 0.73526 0.81508 0.81141 0.74683 0.76587 0.92309 0.87730 0.88399 0.90058 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 7.59 71.98 0.55 -3.22 16 2 C 0.14 3.05 3.49 44.97 0.16 3.20 16 3 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.12 -1.87 5.37 30.67 0.16 -1.71 16 5 C -0.11 -1.08 5.35 30.62 0.16 -0.92 16 6 C 0.14 2.55 2.60 45.07 0.12 2.66 16 7 H 0.05 1.42 7.58 -2.39 -0.02 1.40 16 8 N -0.70 -8.38 5.08 -442.18 -2.25 -10.63 16 9 C 0.50 10.05 7.79 87.66 0.68 10.73 16 10 O -0.56 -20.81 13.84 20.42 0.28 -20.53 16 11 C -0.15 -1.23 6.19 29.10 0.18 -1.05 16 12 C 0.50 9.43 8.09 87.66 0.71 10.14 16 13 N -0.84 -7.00 8.87 -173.53 -1.54 -8.54 16 14 O -0.57 -20.69 15.02 20.40 0.31 -20.38 16 15 C 0.10 2.27 5.90 86.36 0.51 2.78 16 16 N -0.60 -17.90 2.97 -795.04 -2.36 -20.26 16 17 C 0.53 22.53 7.62 87.66 0.67 23.20 16 18 O -0.54 -26.17 11.27 -3.04 -0.03 -26.20 16 19 C -0.13 -6.04 4.56 71.24 0.32 -5.72 16 20 S -0.14 -8.32 20.57 -56.49 -1.16 -9.48 16 21 C -0.55 -34.92 9.50 67.95 0.65 -34.27 16 22 H 0.07 4.34 7.80 -2.91 -0.02 4.32 16 23 C 0.02 1.10 5.49 84.86 0.47 1.57 16 24 N -0.91 -58.74 13.22 21.65 0.29 -58.46 16 25 Si 1.00 47.55 29.55 68.60 2.03 49.58 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 28 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 29 H 0.04 1.38 6.73 -2.39 -0.02 1.36 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.51 6.77 -2.38 -0.02 1.50 16 32 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.43 0.47 8.60 -92.70 -0.80 -0.33 16 37 H 0.17 -0.09 8.14 -2.39 -0.02 -0.10 16 38 H 0.17 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.42 -0.56 8.83 -92.71 -0.82 -1.37 16 40 H 0.40 3.80 8.93 -92.71 -0.83 2.97 16 41 H 0.06 1.86 5.96 -2.39 -0.01 1.85 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.10 4.35 8.11 -2.39 -0.02 4.33 16 44 H 0.08 4.01 7.47 -2.40 -0.02 3.99 16 45 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -108.52 379.67 -0.50 -109.02 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -1.39 Total: 8.49 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.34 Total: 7.39 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -5.86 Total: -97.88 kcal Atomic # 8 Polarization: -67.67 SS G_CDS: 0.55 Total: -67.11 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -108.52 -0.50 -109.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739189607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.207 kcal (2) G-P(sol) polarization free energy of solvation -108.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds