Wall clock time and date at job start Wed Apr 1 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47251 * 2 1 4 4 C 1.46493 * 120.00111 * 274.43346 * 3 2 1 5 5 C 1.50704 * 109.47030 * 262.31911 * 4 3 2 6 6 H 1.07996 * 120.00028 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00106 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00171 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99998 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47426 * 90.00376 * 9 7 5 11 11 H 1.48505 * 109.47275 * 210.00269 * 9 7 5 12 12 H 1.48498 * 109.47276 * 330.00131 * 9 7 5 13 13 C 1.34777 * 119.99515 * 94.42944 * 3 2 1 14 14 O 1.21362 * 120.00617 * 1.53566 * 13 3 2 15 15 C 1.49341 * 119.99512 * 181.53140 * 13 3 2 16 16 O 1.21378 * 120.00234 * 355.84212 * 15 13 3 17 17 N 1.34780 * 119.99631 * 175.83726 * 15 13 3 18 18 C 1.39744 * 120.00003 * 185.91618 * 17 15 13 19 19 C 1.38828 * 120.10385 * 31.55596 * 18 17 15 20 20 C 1.38136 * 119.98891 * 179.97438 * 19 18 17 21 21 C 1.38344 * 120.20002 * 0.02705 * 20 19 18 22 22 C 1.38186 * 120.21356 * 359.67150 * 21 20 19 23 23 C 1.38687 * 120.00661 * 0.60271 * 22 21 20 24 24 N 1.40272 * 120.10063 * 179.69215 * 23 22 21 25 25 C 1.36097 * 125.94034 * 355.12331 * 24 23 22 26 26 C 1.35393 * 106.05004 * 180.23715 * 25 24 23 27 27 N 1.33765 * 106.52872 * 359.58335 * 26 25 24 28 28 N 1.28595 * 109.06564 * 0.43015 * 27 26 25 29 29 H 1.08994 * 109.47252 * 59.99880 * 1 2 3 30 30 H 1.09006 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46634 * 299.99657 * 1 2 3 32 32 H 1.09004 * 109.47104 * 240.00347 * 2 1 3 33 33 H 1.08999 * 109.47662 * 120.00705 * 2 1 3 34 34 H 1.08999 * 109.47720 * 22.32156 * 4 3 2 35 35 H 1.08999 * 109.47382 * 142.32438 * 4 3 2 36 36 H 0.96996 * 120.00413 * 179.97438 * 8 7 5 37 37 H 0.97003 * 120.00183 * 5.92123 * 17 15 13 38 38 H 1.08003 * 120.00852 * 359.95673 * 19 18 17 39 39 H 1.07991 * 119.90172 * 180.02562 * 20 19 18 40 40 H 1.07999 * 119.89519 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.99385 * 180.31983 * 22 21 20 42 42 H 1.07999 * 126.97453 * 359.97113 * 25 24 23 43 43 H 1.07997 * 126.72828 * 179.71820 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1701 2.1045 -1.2649 5 6 3.6074 2.0371 -1.7127 6 1 4.3350 1.5081 -1.1152 7 6 3.9934 2.6500 -2.8860 8 7 3.1073 3.2939 -3.6140 9 14 5.7749 2.5659 -3.4414 10 1 5.9713 1.3663 -4.2945 11 1 6.1092 3.7862 -4.2189 12 1 6.6605 2.4783 -2.2527 13 6 2.3279 1.9864 1.1638 14 8 2.2288 1.3782 2.2093 15 6 2.7932 3.4055 1.1667 16 8 2.9648 3.9901 0.1169 17 7 3.0223 4.0371 2.3351 18 6 3.3375 5.3985 2.3433 19 6 2.8159 6.2399 1.3700 20 6 3.1285 7.5854 1.3807 21 6 3.9613 8.0985 2.3590 22 6 4.4801 7.2697 3.3355 23 6 4.1766 5.9165 3.3297 24 7 4.7074 5.0722 4.3162 25 6 5.6028 5.4301 5.2766 26 6 5.8406 4.3120 6.0020 27 7 5.0873 3.3443 5.4676 28 7 4.4318 3.8243 4.4709 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5318 1.6497 -2.0224 35 1 1.8818 3.1463 -1.1246 36 1 3.3789 3.7254 -4.4391 37 1 2.9686 3.5467 3.1702 38 1 2.1660 5.8426 0.6044 39 1 2.7217 8.2387 0.6232 40 1 4.2022 9.1513 2.3630 41 1 5.1257 7.6750 4.1005 42 1 6.0387 6.4068 5.4266 43 1 6.5061 4.2201 6.8476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123904416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:37 Heat of formation + Delta-G solvation = 98.759284 kcal Electronic energy + Delta-G solvation = -30351.572670 eV Core-core repulsion = 26208.091028 eV Total energy + Delta-G solvation = -4143.481642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.56806 -40.68729 -39.33692 -37.75973 -35.75571 -34.83426 -34.24389 -32.65857 -31.32199 -30.51675 -30.30355 -29.54153 -27.06339 -25.20238 -24.30443 -23.65804 -23.04032 -22.14142 -21.64503 -21.00604 -19.18042 -18.70226 -17.44606 -16.96674 -16.61914 -16.55346 -15.95379 -15.55092 -15.36278 -15.17336 -15.07137 -14.63791 -14.29406 -14.19972 -13.94016 -13.66948 -13.51140 -13.01012 -12.95415 -12.33782 -12.24784 -11.99807 -11.88261 -11.81389 -11.64413 -11.49136 -11.14773 -11.08884 -10.93860 -10.86457 -10.56960 -10.46702 -10.31307 -9.96264 -9.66812 -9.61841 -8.94852 -8.71336 -8.30271 -8.10288 -7.81156 -6.03972 -4.05786 0.46419 1.05564 1.85515 2.11517 2.14164 2.43544 2.80251 3.29799 3.35943 3.41219 3.50478 3.91253 4.03164 4.18694 4.32563 4.45184 4.70445 4.82098 4.87495 4.94919 5.04277 5.16091 5.18766 5.32592 5.47300 5.54261 5.60038 5.71061 5.81522 5.89219 5.98965 6.13097 6.18759 6.24645 6.30092 6.37788 6.54061 6.57346 6.70898 6.83245 7.33901 7.39664 7.55785 7.86449 8.09458 8.19282 8.29149 8.35194 8.67543 8.95677 9.57040 11.04758 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.004287 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.987106 B = 6529.902521 C = 7673.308733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.559 5.559 4 C 0.225 3.775 5 C -0.516 4.516 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.508 3.492 14 O -0.551 6.551 15 C 0.492 3.508 16 O -0.432 6.432 17 N -0.656 5.656 18 C 0.192 3.808 19 C -0.110 4.110 20 C -0.080 4.080 21 C -0.126 4.126 22 C -0.095 4.095 23 C 0.072 3.928 24 N -0.230 5.230 25 C -0.050 4.050 26 C -0.046 4.046 27 N -0.258 5.258 28 N -0.087 5.087 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.261 0.739 37 H 0.430 0.570 38 H 0.155 0.845 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.194 0.806 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.150 9.815 14.315 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.290 5.290 4 C 0.106 3.894 5 C -0.555 4.555 6 H 0.071 0.929 7 C -0.132 4.132 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.289 3.711 14 O -0.431 6.431 15 C 0.274 3.726 16 O -0.299 6.299 17 N -0.309 5.309 18 C 0.092 3.908 19 C -0.131 4.131 20 C -0.100 4.100 21 C -0.146 4.146 22 C -0.116 4.116 23 C -0.022 4.022 24 N -0.017 5.017 25 C -0.199 4.199 26 C -0.203 4.203 27 N -0.123 5.123 28 N -0.065 5.065 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.275 0.725 38 H 0.172 0.828 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.210 0.790 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.654 8.625 13.352 15.909 hybrid contribution 1.869 0.773 0.270 2.041 sum 1.215 9.398 13.622 16.594 Atomic orbital electron populations 1.22109 0.96214 1.01637 1.02201 1.21447 0.93872 0.82860 1.03221 1.48283 1.59196 1.13468 1.08023 1.20011 0.97651 0.93711 0.77994 1.21236 0.93795 1.33828 1.06607 0.92868 1.24778 0.97226 0.94847 0.96341 1.69912 1.33582 1.34803 1.14614 0.86600 0.85357 0.77446 0.78614 1.20670 1.21118 1.20143 1.19584 0.79938 0.86869 0.84668 1.90693 1.54967 1.65910 1.31546 1.20592 0.79627 0.88919 0.83480 1.90948 1.43200 1.66539 1.29242 1.43859 1.67968 1.07116 1.11950 1.17508 0.93920 0.84586 0.94779 1.21352 1.00410 0.92604 0.98728 1.21273 0.96271 0.94746 0.97672 1.20954 0.98949 0.99970 0.94702 1.20644 1.00985 0.89586 1.00425 1.17493 1.01941 0.89943 0.92868 1.44725 1.28342 1.08078 1.20578 1.23794 0.99170 1.03289 0.93670 1.23656 1.03732 0.89204 1.03687 1.75147 1.07348 1.26181 1.03631 1.77951 1.21701 0.91312 1.15570 0.92211 0.91962 0.92786 0.89928 0.90331 0.94865 0.91310 0.92884 0.72540 0.82762 0.84450 0.84576 0.84646 0.78954 0.78824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.24 37.16 0.38 -2.14 16 2 C 0.11 2.00 6.15 -4.04 -0.02 1.97 16 3 N -0.56 -12.26 2.48 -175.61 -0.44 -12.70 16 4 C 0.23 5.61 4.80 -5.20 -0.02 5.58 16 5 C -0.52 -14.25 8.08 -34.44 -0.28 -14.53 16 6 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 8 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.51 11.26 7.66 -11.64 -0.09 11.17 16 14 O -0.55 -12.49 15.99 5.49 0.09 -12.41 16 15 C 0.49 10.54 7.48 -11.63 -0.09 10.45 16 16 O -0.43 -10.15 9.85 5.47 0.05 -10.10 16 17 N -0.66 -12.24 4.81 -10.19 -0.05 -12.29 16 18 C 0.19 3.10 6.32 -83.57 -0.53 2.58 16 19 C -0.11 -1.64 8.66 -39.40 -0.34 -1.98 16 20 C -0.08 -0.90 10.04 -39.58 -0.40 -1.29 16 21 C -0.13 -1.15 10.04 -39.56 -0.40 -1.55 16 22 C -0.10 -0.94 9.45 -39.43 -0.37 -1.31 16 23 C 0.07 0.98 6.69 -83.37 -0.56 0.42 16 24 N -0.23 -3.25 3.56 -10.34 -0.04 -3.29 16 25 C -0.05 -0.52 10.91 -16.67 -0.18 -0.70 16 26 C -0.05 -0.52 12.05 -17.72 -0.21 -0.73 16 27 N -0.26 -4.12 12.39 30.24 0.37 -3.75 16 28 N -0.09 -1.48 9.87 60.35 0.60 -0.89 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 33 H 0.08 1.43 7.27 -51.93 -0.38 1.05 16 34 H 0.03 0.85 8.01 -51.93 -0.42 0.43 16 35 H 0.07 1.83 5.58 -51.93 -0.29 1.54 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.43 8.09 5.58 -40.82 -0.23 7.86 16 38 H 0.15 2.57 6.30 -52.48 -0.33 2.24 16 39 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.14 0.85 6.79 -52.49 -0.36 0.49 16 42 H 0.19 1.04 7.13 -52.49 -0.37 0.67 16 43 H 0.19 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -34.45 366.62 -6.25 -40.71 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.88 Total: 7.24 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -3.21 Total: 9.82 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 1.19 Total: -57.72 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.14 Total: -22.51 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.45 -6.25 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123904416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.469 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds