Wall clock time and date at job start Wed Apr 1 2020 02:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47251 * 2 1 4 4 C 1.46493 * 120.00111 * 274.43346 * 3 2 1 5 5 C 1.50704 * 109.47030 * 262.31911 * 4 3 2 6 6 H 1.07996 * 120.00028 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00106 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00171 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99998 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47426 * 90.00376 * 9 7 5 11 11 H 1.48505 * 109.47275 * 210.00269 * 9 7 5 12 12 H 1.48498 * 109.47276 * 330.00131 * 9 7 5 13 13 C 1.34777 * 119.99515 * 94.42944 * 3 2 1 14 14 O 1.21362 * 120.00617 * 1.53566 * 13 3 2 15 15 C 1.49341 * 119.99512 * 181.53140 * 13 3 2 16 16 O 1.21378 * 120.00234 * 355.84212 * 15 13 3 17 17 N 1.34780 * 119.99631 * 175.83726 * 15 13 3 18 18 C 1.39744 * 120.00003 * 185.91618 * 17 15 13 19 19 C 1.38828 * 120.10385 * 31.55596 * 18 17 15 20 20 C 1.38136 * 119.98891 * 179.97438 * 19 18 17 21 21 C 1.38344 * 120.20002 * 0.02705 * 20 19 18 22 22 C 1.38186 * 120.21356 * 359.67150 * 21 20 19 23 23 C 1.38687 * 120.00661 * 0.60271 * 22 21 20 24 24 N 1.40272 * 120.10063 * 179.69215 * 23 22 21 25 25 C 1.36097 * 125.94034 * 355.12331 * 24 23 22 26 26 C 1.35393 * 106.05004 * 180.23715 * 25 24 23 27 27 N 1.33765 * 106.52872 * 359.58335 * 26 25 24 28 28 N 1.28595 * 109.06564 * 0.43015 * 27 26 25 29 29 H 1.08994 * 109.47252 * 59.99880 * 1 2 3 30 30 H 1.09006 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46634 * 299.99657 * 1 2 3 32 32 H 1.09004 * 109.47104 * 240.00347 * 2 1 3 33 33 H 1.08999 * 109.47662 * 120.00705 * 2 1 3 34 34 H 1.08999 * 109.47720 * 22.32156 * 4 3 2 35 35 H 1.08999 * 109.47382 * 142.32438 * 4 3 2 36 36 H 0.96996 * 120.00413 * 179.97438 * 8 7 5 37 37 H 0.97003 * 120.00183 * 5.92123 * 17 15 13 38 38 H 1.08003 * 120.00852 * 359.95673 * 19 18 17 39 39 H 1.07991 * 119.90172 * 180.02562 * 20 19 18 40 40 H 1.07999 * 119.89519 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.99385 * 180.31983 * 22 21 20 42 42 H 1.07999 * 126.97453 * 359.97113 * 25 24 23 43 43 H 1.07997 * 126.72828 * 179.71820 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1701 2.1045 -1.2649 5 6 3.6074 2.0371 -1.7127 6 1 4.3350 1.5081 -1.1152 7 6 3.9934 2.6500 -2.8860 8 7 3.1073 3.2939 -3.6140 9 14 5.7749 2.5659 -3.4414 10 1 5.9713 1.3663 -4.2945 11 1 6.1092 3.7862 -4.2189 12 1 6.6605 2.4783 -2.2527 13 6 2.3279 1.9864 1.1638 14 8 2.2288 1.3782 2.2093 15 6 2.7932 3.4055 1.1667 16 8 2.9648 3.9901 0.1169 17 7 3.0223 4.0371 2.3351 18 6 3.3375 5.3985 2.3433 19 6 2.8159 6.2399 1.3700 20 6 3.1285 7.5854 1.3807 21 6 3.9613 8.0985 2.3590 22 6 4.4801 7.2697 3.3355 23 6 4.1766 5.9165 3.3297 24 7 4.7074 5.0722 4.3162 25 6 5.6028 5.4301 5.2766 26 6 5.8406 4.3120 6.0020 27 7 5.0873 3.3443 5.4676 28 7 4.4318 3.8243 4.4709 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5318 1.6497 -2.0224 35 1 1.8818 3.1463 -1.1246 36 1 3.3789 3.7254 -4.4391 37 1 2.9686 3.5467 3.1702 38 1 2.1660 5.8426 0.6044 39 1 2.7217 8.2387 0.6232 40 1 4.2022 9.1513 2.3630 41 1 5.1257 7.6750 4.1005 42 1 6.0387 6.4068 5.4266 43 1 6.5061 4.2201 6.8476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123904416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:36 Heat of formation + Delta-G solvation = 75.200942 kcal Electronic energy + Delta-G solvation = -30352.594237 eV Core-core repulsion = 26208.091028 eV Total energy + Delta-G solvation = -4144.503209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.53076 -42.16316 -40.66197 -39.26435 -37.45383 -35.95925 -35.51738 -34.72655 -32.25585 -32.09694 -31.28748 -30.61607 -29.07214 -26.65731 -25.25200 -25.04212 -24.82528 -23.36081 -22.65064 -22.19940 -20.72482 -19.67645 -18.99768 -18.49064 -18.43540 -17.63351 -17.54256 -16.94954 -16.80867 -16.32550 -16.31742 -16.11987 -15.64409 -15.52223 -15.11361 -14.94028 -14.72537 -14.53579 -14.36057 -14.13958 -13.71493 -13.51644 -13.20371 -13.04649 -12.82898 -12.80760 -12.75437 -12.60832 -12.34611 -12.15604 -12.08429 -12.04829 -11.84264 -11.73771 -11.54354 -10.68553 -10.52108 -10.24608 -9.83725 -9.68567 -9.22352 -8.18191 -6.26716 -0.50903 0.01211 0.56477 0.95201 1.20396 1.32632 1.34328 1.35389 1.44850 1.52410 2.12591 2.35932 2.54175 2.64825 3.14666 3.24292 3.34556 3.54582 3.86106 4.04611 4.08427 4.10519 4.23049 4.26976 4.30035 4.31052 4.46931 4.58903 4.66570 4.71737 4.88927 4.97437 5.02186 5.10436 5.18642 5.23037 5.25766 5.37161 5.41676 5.52291 5.54069 5.72810 5.85996 6.02217 6.08777 6.24906 6.67977 6.76522 6.99608 7.35788 7.38949 8.89966 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.004287 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.987106 B = 6529.902521 C = 7673.308733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.100 3.900 3 N -0.562 5.562 4 C 0.244 3.756 5 C -0.525 4.525 6 H 0.036 0.964 7 C 0.028 3.972 8 N -0.915 5.915 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.286 1.286 13 C 0.500 3.500 14 O -0.561 6.561 15 C 0.489 3.511 16 O -0.465 6.465 17 N -0.648 5.648 18 C 0.143 3.857 19 C -0.133 4.133 20 C -0.080 4.080 21 C -0.102 4.102 22 C -0.080 4.080 23 C 0.062 3.938 24 N -0.239 5.239 25 C -0.029 4.029 26 C -0.051 4.051 27 N -0.299 5.299 28 N -0.147 5.147 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.025 0.975 35 H 0.051 0.949 36 H 0.265 0.735 37 H 0.426 0.574 38 H 0.122 0.878 39 H 0.160 0.840 40 H 0.187 0.813 41 H 0.186 0.814 42 H 0.250 0.750 43 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 12.715 15.770 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 N -0.293 5.293 4 C 0.124 3.876 5 C -0.564 4.564 6 H 0.054 0.946 7 C -0.173 4.173 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.201 1.201 12 H -0.211 1.211 13 C 0.282 3.718 14 O -0.442 6.442 15 C 0.271 3.729 16 O -0.336 6.336 17 N -0.301 5.301 18 C 0.046 3.954 19 C -0.154 4.154 20 C -0.099 4.099 21 C -0.121 4.121 22 C -0.100 4.100 23 C -0.031 4.031 24 N -0.026 5.026 25 C -0.177 4.177 26 C -0.209 4.209 27 N -0.164 5.164 28 N -0.125 5.125 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.271 0.729 38 H 0.140 0.860 39 H 0.178 0.822 40 H 0.204 0.796 41 H 0.203 0.797 42 H 0.266 0.734 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.349 11.517 14.827 18.822 hybrid contribution 1.300 0.026 -0.020 1.300 sum 2.648 11.542 14.807 18.960 Atomic orbital electron populations 1.22027 0.93691 1.03719 1.01589 1.21721 0.95975 0.81013 1.03424 1.48310 1.59281 1.14670 1.07032 1.19569 0.96193 0.93048 0.78782 1.21343 0.94593 1.33804 1.06670 0.94593 1.25454 1.00869 0.94511 0.96417 1.69996 1.35167 1.35299 1.14978 0.85715 0.80712 0.78189 0.77912 1.19225 1.20124 1.21121 1.19890 0.79770 0.87531 0.84582 1.90664 1.55529 1.66372 1.31668 1.20483 0.79691 0.88584 0.84127 1.90920 1.45433 1.66962 1.30249 1.43717 1.67316 1.08514 1.10562 1.17872 0.96908 0.83321 0.97309 1.21262 1.01254 0.94558 0.98368 1.21620 0.96312 0.93083 0.98906 1.21545 0.96071 1.02060 0.92440 1.21282 1.00167 0.87414 1.01173 1.17868 1.01703 0.91403 0.92174 1.44920 1.28927 1.07556 1.21232 1.24752 0.96719 1.05122 0.91153 1.24457 1.03349 0.88537 1.04530 1.75074 1.08683 1.28331 1.04276 1.77914 1.24103 0.93215 1.17247 0.92669 0.88483 0.93464 0.89527 0.90224 0.95657 0.93105 0.92565 0.72899 0.86018 0.82222 0.79619 0.79693 0.73398 0.74989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 10.24 71.98 0.74 -3.99 16 2 C 0.10 3.80 6.15 86.38 0.53 4.33 16 3 N -0.56 -26.10 2.48 -827.87 -2.05 -28.16 16 4 C 0.24 12.85 4.80 85.64 0.41 13.26 16 5 C -0.53 -30.22 8.08 25.60 0.21 -30.01 16 6 H 0.04 2.14 7.81 -2.91 -0.02 2.12 16 7 C 0.03 1.57 5.46 84.65 0.46 2.03 16 8 N -0.91 -53.64 13.29 21.45 0.28 -53.35 16 9 Si 0.95 45.64 29.54 68.60 2.03 47.67 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 13 C 0.50 23.75 7.66 87.24 0.67 24.42 16 14 O -0.56 -27.02 15.99 -3.28 -0.05 -27.07 16 15 C 0.49 22.74 7.48 87.23 0.65 23.39 16 16 O -0.47 -23.69 9.85 -3.33 -0.03 -23.72 16 17 N -0.65 -26.17 4.81 -304.49 -1.47 -27.63 16 18 C 0.14 4.84 6.32 38.32 0.24 5.08 16 19 C -0.13 -4.18 8.66 22.39 0.19 -3.98 16 20 C -0.08 -1.64 10.04 22.27 0.22 -1.42 16 21 C -0.10 -1.36 10.04 22.28 0.22 -1.14 16 22 C -0.08 -1.19 9.45 22.36 0.21 -0.98 16 23 C 0.06 1.62 6.69 38.20 0.26 1.87 16 24 N -0.24 -6.47 3.56 -186.63 -0.66 -7.13 16 25 C -0.03 -0.48 10.91 83.37 0.91 0.43 16 26 C -0.05 -1.03 12.05 83.74 1.01 -0.02 16 27 N -0.30 -9.68 12.39 -58.24 -0.72 -10.40 16 28 N -0.15 -5.19 9.87 37.02 0.37 -4.83 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 3.17 8.11 -2.39 -0.02 3.16 16 33 H 0.08 2.99 7.27 -2.39 -0.02 2.97 16 34 H 0.03 1.36 8.01 -2.39 -0.02 1.34 16 35 H 0.05 2.90 5.58 -2.39 -0.01 2.89 16 36 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.43 17.46 5.58 -92.71 -0.52 16.95 16 38 H 0.12 4.53 6.30 -2.91 -0.02 4.51 16 39 H 0.16 2.46 8.06 -2.92 -0.02 2.43 16 40 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 41 H 0.19 0.89 6.79 -2.91 -0.02 0.87 16 42 H 0.25 0.94 7.13 -2.91 -0.02 0.91 16 43 H 0.23 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -82.78 366.62 5.18 -77.60 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.55 Total: 23.76 kcal Atomic # 6 Polarization: 26.33 SS G_CDS: 6.94 Total: 33.27 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -4.25 Total: -131.51 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.09 Total: -50.79 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -82.78 5.18 -77.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123904416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.798 kcal (2) G-P(sol) polarization free energy of solvation -82.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds