Wall clock time and date at job start Wed Apr 1 2020 02:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46991 * 2 1 4 4 C 1.46501 * 120.00323 * 274.46732 * 3 2 1 5 5 C 1.50691 * 109.47228 * 264.95181 * 4 3 2 6 6 H 1.08004 * 120.00263 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00166 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99837 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47189 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46657 * 120.00435 * 9 7 5 12 12 H 1.48497 * 109.47200 * 240.00221 * 9 7 5 13 13 C 1.34779 * 120.00007 * 94.46501 * 3 2 1 14 14 O 1.21363 * 119.99690 * 354.63738 * 13 3 2 15 15 C 1.49336 * 120.00262 * 174.62992 * 13 3 2 16 16 O 1.21388 * 120.00154 * 354.44814 * 15 13 3 17 17 N 1.34774 * 120.00092 * 174.44206 * 15 13 3 18 18 C 1.39760 * 119.99905 * 185.00427 * 17 15 13 19 19 C 1.38966 * 120.01012 * 215.15151 * 18 17 15 20 20 C 1.38000 * 119.98929 * 179.74359 * 19 18 17 21 21 C 1.38867 * 120.01100 * 0.25756 * 20 19 18 22 22 N 1.40287 * 119.98602 * 180.02562 * 21 20 19 23 23 C 1.36106 * 125.93658 * 179.97438 * 22 21 20 24 24 C 1.35380 * 106.04652 * 179.97438 * 23 22 21 25 25 N 1.33771 * 106.53803 * 0.02562 * 24 23 22 26 26 N 1.28606 * 109.05673 * 359.75616 * 25 24 23 27 27 C 1.38866 * 120.02111 * 359.97438 * 21 20 19 28 28 C 1.38001 * 120.01270 * 0.02965 * 27 21 20 29 29 H 1.09005 * 109.46852 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47143 * 299.99687 * 1 2 3 31 31 H 1.08998 * 109.47136 * 59.99924 * 1 2 3 32 32 H 1.08996 * 109.46900 * 240.00663 * 2 1 3 33 33 H 1.08998 * 109.47136 * 120.00076 * 2 1 3 34 34 H 1.09004 * 109.46831 * 24.95647 * 4 3 2 35 35 H 1.09003 * 109.47108 * 144.94980 * 4 3 2 36 36 H 0.97003 * 119.99605 * 179.97438 * 8 7 5 37 37 H 0.96998 * 120.00377 * 5.00107 * 17 15 13 38 38 H 1.08002 * 120.00378 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.99170 * 180.27637 * 20 19 18 40 40 H 1.08000 * 126.97668 * 359.97438 * 23 22 21 41 41 H 1.08002 * 126.73603 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.99235 * 180.02562 * 27 21 20 43 43 H 1.07997 * 120.00588 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1693 2.1048 -1.2648 5 6 3.5920 1.9831 -1.7464 6 1 4.3118 1.4224 -1.1684 7 6 3.9748 2.5867 -2.9255 8 7 3.0983 3.2690 -3.6297 9 14 5.7386 2.4363 -3.5221 10 1 6.5203 1.6233 -2.5562 11 1 5.7565 1.7765 -4.8524 12 1 6.3408 3.7892 -3.6324 13 6 2.3286 1.9863 1.1637 14 8 2.1123 1.4233 2.2168 15 6 2.9387 3.3493 1.1571 16 8 3.2481 3.8708 0.1056 17 7 3.1457 4.0006 2.3188 18 6 3.6187 5.3156 2.3080 19 6 4.4880 5.7498 3.3015 20 6 4.9590 7.0468 3.2874 21 6 4.5602 7.9197 2.2837 22 7 5.0398 9.2380 2.2696 23 6 4.7305 10.1907 1.3481 24 6 5.4086 11.3027 1.7174 25 7 6.0877 10.9843 2.8250 26 7 5.8450 9.7583 3.1285 27 6 3.6878 7.4878 1.2934 28 6 3.2162 6.1909 1.3066 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.4960 1.6797 -2.0092 35 1 1.9258 3.1564 -1.1131 36 1 3.3676 3.6939 -4.4590 37 1 2.9663 3.5566 3.1624 38 1 4.7985 5.0708 4.0819 39 1 5.6381 7.3830 4.0570 40 1 4.0768 10.0817 0.4953 41 1 5.4031 12.2591 1.2157 42 1 3.3783 8.1669 0.5128 43 1 2.5374 5.8552 0.5367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123983815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:39 Heat of formation + Delta-G solvation = 86.870891 kcal Electronic energy + Delta-G solvation = -29267.022083 eV Core-core repulsion = 25123.024921 eV Total energy + Delta-G solvation = -4143.997162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.54475 -40.79342 -39.42691 -37.94128 -36.01297 -35.12792 -33.45500 -32.73844 -31.83591 -30.83872 -30.59589 -29.17966 -27.18319 -25.39864 -24.01867 -23.79032 -23.15680 -22.10745 -21.86579 -20.93369 -19.34790 -18.83859 -17.77898 -17.03915 -16.67710 -16.60093 -16.06632 -15.62752 -15.37167 -15.21040 -15.01933 -14.52230 -14.36199 -14.15695 -13.86909 -13.73302 -13.49219 -13.11252 -13.07464 -13.00687 -12.43997 -12.08405 -12.06344 -11.77453 -11.70154 -11.58307 -11.24492 -11.15872 -11.03240 -10.89982 -10.72281 -10.58296 -10.07749 -9.96374 -9.75912 -9.63004 -9.30977 -8.86542 -8.43151 -8.12189 -7.96705 -6.11611 -4.13144 0.41645 1.09772 1.68826 2.06432 2.11859 2.37978 2.68369 3.24736 3.33082 3.36236 3.44731 3.77312 3.92566 4.19556 4.35744 4.39028 4.61760 4.76753 4.85925 4.93011 5.00918 5.05842 5.22645 5.25699 5.43706 5.46402 5.59999 5.63638 5.71427 5.78854 5.88207 6.06696 6.07416 6.12297 6.19224 6.24946 6.46803 6.51560 6.57392 6.79288 7.16119 7.23166 7.36796 7.77440 7.95346 8.08165 8.16406 8.28125 8.51111 8.86242 9.49888 10.97307 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.003153 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.575123 B = 8878.331692 C =10570.248581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.557 5.557 4 C 0.231 3.769 5 C -0.512 4.512 6 H 0.054 0.946 7 C 0.070 3.930 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.507 3.493 14 O -0.560 6.560 15 C 0.486 3.514 16 O -0.422 6.422 17 N -0.664 5.664 18 C 0.178 3.822 19 C -0.131 4.131 20 C -0.076 4.076 21 C 0.087 3.913 22 N -0.231 5.231 23 C -0.048 4.048 24 C -0.049 4.049 25 N -0.270 5.270 26 N -0.084 5.084 27 C -0.088 4.088 28 C -0.100 4.100 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.059 0.941 36 H 0.262 0.738 37 H 0.419 0.581 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.194 0.806 41 H 0.194 0.806 42 H 0.138 0.862 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 6.596 9.859 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.287 5.287 4 C 0.112 3.888 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.132 4.132 8 N -0.530 5.530 9 Si 0.720 3.280 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.289 3.711 14 O -0.441 6.441 15 C 0.268 3.732 16 O -0.288 6.288 17 N -0.313 5.313 18 C 0.082 3.918 19 C -0.152 4.152 20 C -0.097 4.097 21 C -0.005 4.005 22 N -0.019 5.019 23 C -0.197 4.197 24 C -0.205 4.205 25 N -0.136 5.136 26 N -0.063 5.063 27 C -0.110 4.110 28 C -0.121 4.121 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.257 0.743 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.211 0.789 41 H 0.211 0.789 42 H 0.156 0.844 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.031 6.506 10.613 12.613 hybrid contribution 0.329 -0.071 -1.266 1.310 sum -1.702 6.435 9.348 11.476 Atomic orbital electron populations 1.22106 0.96128 1.01697 1.02273 1.21452 0.94024 0.82598 1.03139 1.48310 1.58723 1.13543 1.08149 1.19886 0.97807 0.93060 0.78018 1.21202 0.94820 1.32675 1.06327 0.92741 1.24775 0.97209 0.94790 0.96426 1.69915 1.33928 1.33984 1.15196 0.86538 0.85047 0.77882 0.78497 1.19938 1.21018 1.20967 1.19663 0.80355 0.86412 0.84659 1.90663 1.55903 1.66549 1.30999 1.20549 0.81078 0.87800 0.83806 1.91055 1.42643 1.66283 1.28804 1.43364 1.65656 1.11714 1.10590 1.17884 0.93778 0.84157 0.95986 1.20846 0.97527 0.96071 1.00784 1.20679 0.99503 0.92144 0.97359 1.17610 1.02034 0.80679 1.00145 1.44722 1.29752 1.09555 1.17821 1.23886 1.07134 0.89131 0.99535 1.23626 0.99516 1.00439 0.96888 1.75094 1.20225 1.04535 1.13743 1.78319 1.08898 1.04476 1.14570 1.20741 0.96437 0.96730 0.97059 1.21103 1.00575 0.91040 0.99423 0.91958 0.92687 0.92190 0.89796 0.90511 0.94731 0.92309 0.92881 0.74299 0.84077 0.83781 0.78886 0.78945 0.84409 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.83 6.12 -4.04 -0.02 1.80 16 3 N -0.56 -11.02 2.47 -175.61 -0.43 -11.46 16 4 C 0.23 5.36 4.77 -5.20 -0.02 5.33 16 5 C -0.51 -13.27 7.74 -34.44 -0.27 -13.54 16 6 H 0.05 1.45 7.81 -52.48 -0.41 1.04 16 7 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 8 N -0.89 -24.65 13.29 55.43 0.74 -23.92 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.51 9.70 7.68 -11.64 -0.09 9.61 16 14 O -0.56 -10.67 16.05 5.49 0.09 -10.59 16 15 C 0.49 8.86 7.42 -11.64 -0.09 8.77 16 16 O -0.42 -9.05 9.97 5.46 0.05 -9.00 16 17 N -0.66 -9.37 5.32 -10.28 -0.05 -9.42 16 18 C 0.18 2.36 6.24 -83.71 -0.52 1.84 16 19 C -0.13 -1.45 9.96 -39.40 -0.39 -1.84 16 20 C -0.08 -0.87 9.61 -39.44 -0.38 -1.25 16 21 C 0.09 1.07 6.68 -83.52 -0.56 0.51 16 22 N -0.23 -2.93 3.56 -10.44 -0.04 -2.97 16 23 C -0.05 -0.49 10.92 -16.67 -0.18 -0.67 16 24 C -0.05 -0.51 12.05 -17.73 -0.21 -0.72 16 25 N -0.27 -3.77 12.39 30.24 0.37 -3.39 16 26 N -0.08 -1.21 12.41 60.35 0.75 -0.46 16 27 C -0.09 -1.05 9.45 -39.44 -0.37 -1.42 16 28 C -0.10 -1.38 8.64 -39.40 -0.34 -1.72 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 33 H 0.08 1.23 7.37 -51.93 -0.38 0.85 16 34 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 35 H 0.06 1.46 5.92 -51.93 -0.31 1.15 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.42 4.97 8.30 -40.82 -0.34 4.63 16 38 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.14 1.52 7.69 -52.49 -0.40 1.11 16 40 H 0.19 1.26 7.10 -52.49 -0.37 0.89 16 41 H 0.19 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.14 1.30 6.76 -52.49 -0.35 0.94 16 43 H 0.15 2.31 6.56 -52.49 -0.34 1.97 16 LS Contribution 371.77 15.07 5.60 5.60 Total: -1.00 -32.24 371.77 -6.11 -38.35 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.00 Total: 4.55 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -3.17 Total: 6.59 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 1.33 Total: -51.61 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.14 Total: -19.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.24 -6.11 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123983815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.218 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds