Wall clock time and date at job start Wed Apr 1 2020 02:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46991 * 2 1 4 4 C 1.46501 * 120.00323 * 274.46732 * 3 2 1 5 5 C 1.50691 * 109.47228 * 264.95181 * 4 3 2 6 6 H 1.08004 * 120.00263 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00166 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99837 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47189 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46657 * 120.00435 * 9 7 5 12 12 H 1.48497 * 109.47200 * 240.00221 * 9 7 5 13 13 C 1.34779 * 120.00007 * 94.46501 * 3 2 1 14 14 O 1.21363 * 119.99690 * 354.63738 * 13 3 2 15 15 C 1.49336 * 120.00262 * 174.62992 * 13 3 2 16 16 O 1.21388 * 120.00154 * 354.44814 * 15 13 3 17 17 N 1.34774 * 120.00092 * 174.44206 * 15 13 3 18 18 C 1.39760 * 119.99905 * 185.00427 * 17 15 13 19 19 C 1.38966 * 120.01012 * 215.15151 * 18 17 15 20 20 C 1.38000 * 119.98929 * 179.74359 * 19 18 17 21 21 C 1.38867 * 120.01100 * 0.25756 * 20 19 18 22 22 N 1.40287 * 119.98602 * 180.02562 * 21 20 19 23 23 C 1.36106 * 125.93658 * 179.97438 * 22 21 20 24 24 C 1.35380 * 106.04652 * 179.97438 * 23 22 21 25 25 N 1.33771 * 106.53803 * 0.02562 * 24 23 22 26 26 N 1.28606 * 109.05673 * 359.75616 * 25 24 23 27 27 C 1.38866 * 120.02111 * 359.97438 * 21 20 19 28 28 C 1.38001 * 120.01270 * 0.02965 * 27 21 20 29 29 H 1.09005 * 109.46852 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47143 * 299.99687 * 1 2 3 31 31 H 1.08998 * 109.47136 * 59.99924 * 1 2 3 32 32 H 1.08996 * 109.46900 * 240.00663 * 2 1 3 33 33 H 1.08998 * 109.47136 * 120.00076 * 2 1 3 34 34 H 1.09004 * 109.46831 * 24.95647 * 4 3 2 35 35 H 1.09003 * 109.47108 * 144.94980 * 4 3 2 36 36 H 0.97003 * 119.99605 * 179.97438 * 8 7 5 37 37 H 0.96998 * 120.00377 * 5.00107 * 17 15 13 38 38 H 1.08002 * 120.00378 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.99170 * 180.27637 * 20 19 18 40 40 H 1.08000 * 126.97668 * 359.97438 * 23 22 21 41 41 H 1.08002 * 126.73603 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.99235 * 180.02562 * 27 21 20 43 43 H 1.07997 * 120.00588 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1693 2.1048 -1.2648 5 6 3.5920 1.9831 -1.7464 6 1 4.3118 1.4224 -1.1684 7 6 3.9748 2.5867 -2.9255 8 7 3.0983 3.2690 -3.6297 9 14 5.7386 2.4363 -3.5221 10 1 6.5203 1.6233 -2.5562 11 1 5.7565 1.7765 -4.8524 12 1 6.3408 3.7892 -3.6324 13 6 2.3286 1.9863 1.1637 14 8 2.1123 1.4233 2.2168 15 6 2.9387 3.3493 1.1571 16 8 3.2481 3.8708 0.1056 17 7 3.1457 4.0006 2.3188 18 6 3.6187 5.3156 2.3080 19 6 4.4880 5.7498 3.3015 20 6 4.9590 7.0468 3.2874 21 6 4.5602 7.9197 2.2837 22 7 5.0398 9.2380 2.2696 23 6 4.7305 10.1907 1.3481 24 6 5.4086 11.3027 1.7174 25 7 6.0877 10.9843 2.8250 26 7 5.8450 9.7583 3.1285 27 6 3.6878 7.4878 1.2934 28 6 3.2162 6.1909 1.3066 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.4960 1.6797 -2.0092 35 1 1.9258 3.1564 -1.1131 36 1 3.3676 3.6939 -4.4590 37 1 2.9663 3.5566 3.1624 38 1 4.7985 5.0708 4.0819 39 1 5.6381 7.3830 4.0570 40 1 4.0768 10.0817 0.4953 41 1 5.4031 12.2591 1.2157 42 1 3.3783 8.1669 0.5128 43 1 2.5374 5.8552 0.5367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123983815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:39 Heat of formation + Delta-G solvation = 66.390186 kcal Electronic energy + Delta-G solvation = -29267.910193 eV Core-core repulsion = 25123.024921 eV Total energy + Delta-G solvation = -4144.885272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.44385 -42.11860 -40.64117 -39.27778 -37.47127 -36.36143 -34.67045 -34.54190 -32.74302 -32.04029 -31.72594 -30.23628 -29.01997 -26.67011 -25.03993 -24.99345 -24.81019 -23.28232 -22.81071 -22.01957 -20.70172 -19.73377 -19.10952 -18.56329 -18.42407 -17.53467 -17.52120 -16.92374 -16.69629 -16.31897 -16.26161 -16.01064 -15.53987 -15.31181 -14.98738 -14.94041 -14.54034 -14.47547 -14.30578 -14.14635 -14.05320 -13.57455 -13.35590 -13.14392 -12.98621 -12.75914 -12.70557 -12.60591 -12.33122 -12.19088 -12.10670 -12.05342 -11.78932 -11.66454 -11.10146 -10.61616 -10.48490 -10.32496 -10.14061 -9.64317 -9.15166 -8.13834 -6.20318 -0.56484 0.15647 0.42675 0.95680 1.21466 1.36918 1.38841 1.41415 1.49204 1.51746 2.17871 2.39893 2.57773 2.61833 3.20812 3.33226 3.39883 3.55773 3.71056 3.94908 4.03268 4.16091 4.17036 4.26068 4.33809 4.36033 4.52741 4.53922 4.65644 4.77211 4.85787 4.94769 5.03118 5.07430 5.10407 5.15286 5.25869 5.28165 5.37102 5.49943 5.57085 5.77198 5.83263 6.06482 6.12662 6.32127 6.74759 6.83448 7.06374 7.36712 7.45230 8.94426 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.003153 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.575123 B = 8878.331692 C =10570.248581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 N -0.565 5.565 4 C 0.251 3.749 5 C -0.512 4.512 6 H 0.043 0.957 7 C 0.027 3.973 8 N -0.919 5.919 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.275 1.275 12 H -0.286 1.286 13 C 0.504 3.496 14 O -0.558 6.558 15 C 0.488 3.512 16 O -0.462 6.462 17 N -0.645 5.645 18 C 0.157 3.843 19 C -0.114 4.114 20 C -0.079 4.079 21 C 0.084 3.916 22 N -0.240 5.240 23 C -0.044 4.044 24 C -0.049 4.049 25 N -0.299 5.299 26 N -0.117 5.117 27 C -0.085 4.085 28 C -0.114 4.114 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.023 0.977 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.431 0.569 38 H 0.170 0.830 39 H 0.154 0.846 40 H 0.229 0.771 41 H 0.229 0.771 42 H 0.161 0.839 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 6.860 10.435 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.295 5.295 4 C 0.130 3.870 5 C -0.550 4.550 6 H 0.061 0.939 7 C -0.173 4.173 8 N -0.559 5.559 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.212 1.212 13 C 0.287 3.713 14 O -0.439 6.439 15 C 0.270 3.730 16 O -0.332 6.332 17 N -0.295 5.295 18 C 0.061 3.939 19 C -0.135 4.135 20 C -0.100 4.100 21 C -0.007 4.007 22 N -0.027 5.027 23 C -0.193 4.193 24 C -0.205 4.205 25 N -0.165 5.165 26 N -0.095 5.095 27 C -0.106 4.106 28 C -0.135 4.135 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.271 0.729 38 H 0.188 0.812 39 H 0.172 0.828 40 H 0.245 0.755 41 H 0.245 0.755 42 H 0.178 0.822 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.773 6.758 11.260 13.251 hybrid contribution 0.234 -0.072 -1.364 1.386 sum -1.539 6.686 9.896 12.042 Atomic orbital electron populations 1.22029 0.94051 1.03527 1.01587 1.21685 0.95758 0.80936 1.03424 1.48290 1.59333 1.14656 1.07242 1.19400 0.96098 0.92423 0.79055 1.21354 0.95754 1.31886 1.06045 0.93919 1.25401 1.00240 0.94808 0.96825 1.69997 1.35344 1.34964 1.15626 0.85722 0.81340 0.77538 0.78273 1.19935 1.20085 1.21249 1.19867 0.80150 0.86863 0.84461 1.90652 1.55882 1.66743 1.30670 1.20455 0.80703 0.87463 0.84382 1.91044 1.44829 1.66998 1.30299 1.43124 1.64540 1.11975 1.09819 1.18053 0.95202 0.83534 0.97073 1.21056 0.95918 0.96226 1.00293 1.20886 0.99477 0.92164 0.97445 1.17780 1.01787 0.80906 1.00259 1.44848 1.29754 1.09855 1.18246 1.24591 1.06739 0.88331 0.99605 1.24305 0.98383 1.01975 0.95841 1.75049 1.21360 1.04672 1.15401 1.78289 1.10404 1.04995 1.15807 1.20865 0.95933 0.96311 0.97492 1.21034 1.01023 0.92126 0.99333 0.88860 0.93129 0.93022 0.89843 0.89835 0.95905 0.94018 0.92828 0.72947 0.81245 0.82840 0.75459 0.75456 0.82167 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 10.24 71.98 0.74 -3.38 16 2 C 0.10 3.35 6.12 86.38 0.53 3.88 16 3 N -0.56 -22.47 2.47 -827.87 -2.04 -24.51 16 4 C 0.25 11.88 4.77 85.63 0.41 12.29 16 5 C -0.51 -26.89 7.74 25.60 0.20 -26.69 16 6 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 7 C 0.03 1.44 5.46 84.65 0.46 1.90 16 8 N -0.92 -51.47 13.29 21.45 0.28 -51.19 16 9 Si 0.94 43.42 29.54 68.60 2.03 45.45 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 13 C 0.50 19.24 7.68 87.23 0.67 19.91 16 14 O -0.56 -20.73 16.05 -3.29 -0.05 -20.79 16 15 C 0.49 17.95 7.42 87.23 0.65 18.60 16 16 O -0.46 -20.36 9.97 -3.36 -0.03 -20.40 16 17 N -0.64 -17.82 5.32 -304.77 -1.62 -19.45 16 18 C 0.16 4.04 6.24 38.22 0.24 4.28 16 19 C -0.11 -2.32 9.96 22.39 0.22 -2.10 16 20 C -0.08 -1.70 9.61 22.36 0.21 -1.48 16 21 C 0.08 1.95 6.68 38.09 0.25 2.21 16 22 N -0.24 -5.72 3.56 -186.95 -0.67 -6.39 16 23 C -0.04 -0.80 10.92 83.37 0.91 0.11 16 24 C -0.05 -0.91 12.05 83.74 1.01 0.10 16 25 N -0.30 -8.05 12.39 -58.24 -0.72 -8.77 16 26 N -0.12 -3.28 12.41 37.02 0.46 -2.82 16 27 C -0.09 -1.92 9.45 22.36 0.21 -1.71 16 28 C -0.11 -3.12 8.64 22.39 0.19 -2.93 16 29 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 33 H 0.08 2.58 7.37 -2.39 -0.02 2.56 16 34 H 0.02 1.13 8.03 -2.38 -0.02 1.11 16 35 H 0.04 2.15 5.92 -2.39 -0.01 2.14 16 36 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 37 H 0.43 9.67 8.30 -92.71 -0.77 8.90 16 38 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.15 3.01 7.69 -2.91 -0.02 2.99 16 40 H 0.23 2.19 7.10 -2.91 -0.02 2.17 16 41 H 0.23 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.16 2.73 6.76 -2.91 -0.02 2.71 16 43 H 0.13 4.16 6.56 -2.91 -0.02 4.14 16 Total: -1.00 -70.25 371.77 4.84 -65.41 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.30 Total: 18.46 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 6.91 Total: 24.98 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -4.31 Total: -113.12 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -0.09 Total: -41.19 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -70.25 4.84 -65.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123983815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.802 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds