Wall clock time and date at job start Wed Apr 1 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47148 * 2 1 4 4 C 1.50703 * 109.47174 * 240.00531 * 2 1 3 5 5 H 1.08000 * 119.99834 * 240.00589 * 4 2 1 6 6 C 1.37881 * 119.99939 * 59.99250 * 4 2 1 7 7 N 1.31508 * 120.00257 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99481 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47354 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46614 * 120.00454 * 8 6 4 11 11 H 1.48500 * 109.46674 * 240.00176 * 8 6 4 12 12 N 1.46497 * 109.47436 * 120.00258 * 2 1 3 13 13 C 1.46497 * 119.99738 * 59.99604 * 12 2 1 14 14 C 1.34777 * 120.00000 * 239.99868 * 12 2 1 15 15 O 1.21363 * 120.00084 * 354.34288 * 14 12 2 16 16 C 1.49340 * 120.00093 * 174.34033 * 14 12 2 17 17 O 1.21389 * 119.99777 * 359.87377 * 16 14 12 18 18 N 1.34770 * 120.00165 * 179.88357 * 16 14 12 19 19 C 1.39765 * 119.99964 * 185.11022 * 18 16 14 20 20 C 1.38960 * 120.00997 * 144.56958 * 19 18 16 21 21 C 1.38000 * 119.98556 * 179.97438 * 20 19 18 22 22 C 1.38871 * 120.01161 * 359.97438 * 21 20 19 23 23 N 1.40290 * 119.98506 * 179.97438 * 22 21 20 24 24 C 1.36100 * 125.93888 * 179.97438 * 23 22 21 25 25 C 1.35383 * 106.04975 * 179.97438 * 24 23 22 26 26 N 1.33764 * 106.53649 * 359.97438 * 25 24 23 27 27 N 1.28611 * 109.05945 * 0.02562 * 26 25 24 28 28 C 1.38862 * 120.02232 * 0.27746 * 22 21 20 29 29 C 1.38003 * 120.01164 * 359.48427 * 28 22 21 30 30 H 1.08999 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46573 * 300.00044 * 1 2 3 32 32 H 1.09001 * 109.47246 * 59.99655 * 1 2 3 33 33 H 0.96997 * 120.00290 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47570 * 264.05457 * 13 12 2 35 35 H 1.08999 * 109.47283 * 24.06360 * 13 12 2 36 36 H 1.09000 * 109.46848 * 144.06223 * 13 12 2 37 37 H 0.97001 * 120.00411 * 5.10313 * 18 16 14 38 38 H 1.07996 * 120.00960 * 359.95980 * 20 19 18 39 39 H 1.08001 * 119.99169 * 180.02562 * 21 20 19 40 40 H 1.07999 * 126.97378 * 359.70846 * 24 23 22 41 41 H 1.07997 * 126.73261 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.99553 * 179.75099 * 28 22 21 43 43 H 1.07997 * 120.00567 * 180.23242 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1455 -2.2874 -3.6039 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.1714 1.0921 1.8423 16 6 3.1867 -0.6977 3.3628 17 8 2.8067 -1.8248 3.6048 18 7 3.9635 -0.0436 4.2488 19 6 4.4199 -0.6993 5.3957 20 6 5.6838 -0.4184 5.9004 21 6 6.1336 -1.0657 7.0331 22 6 5.3234 -1.9973 7.6688 23 7 5.7815 -2.6554 8.8199 24 6 5.0922 -3.5850 9.5363 25 6 5.9053 -3.9507 10.5551 26 7 7.0315 -3.2424 10.4165 27 7 6.9272 -2.4859 9.3817 28 6 4.0624 -2.2822 7.1618 29 6 3.6096 -1.6318 6.0320 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 0.7093 1.1619 -3.4843 34 1 0.7980 -2.1451 2.0871 35 1 1.4267 -2.5698 0.4769 36 1 2.5055 -2.6082 1.8921 37 1 4.2060 0.8822 4.0907 38 1 6.3139 0.3062 5.4062 39 1 7.1158 -0.8472 7.4256 40 1 4.0968 -3.9527 9.3355 41 1 5.6874 -4.6728 11.3280 42 1 3.4342 -3.0097 7.6542 43 1 2.6274 -1.8507 5.6399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131900025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:04 Heat of formation + Delta-G solvation = 88.066768 kcal Electronic energy + Delta-G solvation = -28583.504408 eV Core-core repulsion = 24439.559104 eV Total energy + Delta-G solvation = -4143.945305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.74599 -41.12959 -39.58418 -38.15065 -36.22307 -35.40823 -33.80089 -32.86034 -32.06688 -31.05914 -29.73521 -29.35688 -26.44651 -25.47020 -25.24437 -24.23286 -23.66525 -22.21761 -21.73153 -20.76398 -19.42650 -19.06616 -18.00596 -17.34558 -16.80654 -16.53060 -16.14621 -15.99463 -15.60590 -15.50716 -15.24593 -14.70449 -14.55863 -14.33209 -14.07138 -13.73756 -13.40987 -13.35225 -13.22622 -12.64339 -12.49437 -12.28537 -11.99153 -11.76969 -11.72405 -11.48646 -11.35628 -11.18109 -10.94326 -10.88771 -10.86708 -10.37400 -10.29967 -10.28062 -9.82682 -9.56143 -9.32142 -8.99594 -8.55642 -8.43182 -7.87527 -6.19867 -4.28368 0.15274 0.83205 1.41323 1.78613 1.89530 2.19671 2.44718 3.19599 3.20844 3.28151 3.31355 3.52925 3.81254 3.97920 4.12996 4.29657 4.37200 4.53986 4.62868 4.69796 4.75920 4.84125 4.98301 5.12313 5.21713 5.35064 5.53634 5.68041 5.79228 5.84824 5.90355 5.97909 6.09357 6.23310 6.44580 6.52126 6.59332 6.64488 6.83421 6.90303 7.11755 7.27198 7.56692 7.64715 7.85162 7.99282 8.09039 8.22018 8.45196 8.76251 9.38188 10.85660 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.027963 B = 0.001954 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.092437 B =14323.024806 C =14378.398025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.254 3.746 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.550 5.550 13 C 0.078 3.922 14 C 0.493 3.507 15 O -0.533 6.533 16 C 0.511 3.489 17 O -0.497 6.497 18 N -0.653 5.653 19 C 0.165 3.835 20 C -0.124 4.124 21 C -0.077 4.077 22 C 0.094 3.906 23 N -0.234 5.234 24 C -0.050 4.050 25 C -0.046 4.046 26 N -0.267 5.267 27 N -0.082 5.082 28 C -0.094 4.094 29 C -0.103 4.103 30 H 0.033 0.967 31 H 0.013 0.987 32 H 0.097 0.903 33 H 0.265 0.735 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.426 0.574 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.194 0.806 41 H 0.195 0.805 42 H 0.139 0.861 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 -6.301 20.659 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 H 0.085 0.915 4 C -0.567 4.567 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.280 5.280 13 C -0.065 4.065 14 C 0.273 3.727 15 O -0.411 6.411 16 C 0.295 3.705 17 O -0.371 6.371 18 N -0.300 5.300 19 C 0.069 3.931 20 C -0.145 4.145 21 C -0.098 4.098 22 C 0.002 3.998 23 N -0.022 5.022 24 C -0.198 4.198 25 C -0.202 4.202 26 N -0.133 5.133 27 N -0.060 5.060 28 C -0.115 4.115 29 C -0.123 4.123 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.265 0.735 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.211 0.789 41 H 0.211 0.789 42 H 0.156 0.844 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.057 -5.672 20.428 21.795 hybrid contribution -0.742 -0.716 -0.930 1.389 sum 4.314 -6.389 19.498 20.966 Atomic orbital electron populations 1.22107 0.97433 0.99899 1.01099 1.19209 0.91310 0.94589 0.79407 0.91526 1.21294 1.32246 1.13245 0.89940 0.91908 1.24891 0.94793 0.94953 0.99058 1.69870 1.36100 1.22472 1.23937 0.86385 0.78654 0.79597 0.82467 1.19723 1.20826 1.20814 1.48292 1.45296 1.12495 1.21905 1.22017 1.00931 0.81626 1.01950 1.19519 0.82070 0.86703 0.84403 1.90741 1.54520 1.18684 1.77204 1.21071 0.78057 0.85944 0.85468 1.90691 1.51594 1.18185 1.76584 1.43342 1.50251 1.16809 1.19590 1.17957 0.92639 0.95324 0.87141 1.20922 0.93936 1.02398 0.97247 1.20734 1.00062 0.94328 0.94630 1.17654 0.95768 0.98757 0.87600 1.44744 1.11677 1.26724 1.19035 1.23868 1.02335 0.97381 0.96208 1.23658 0.91316 1.04016 1.01255 1.75120 1.21989 1.06181 1.10031 1.78357 1.01888 1.20344 1.05421 1.20767 0.93429 1.00621 0.96667 1.21233 1.01105 0.96502 0.93488 0.94744 0.96832 0.88413 0.92544 0.93233 0.90238 0.90352 0.73473 0.83757 0.83529 0.78898 0.78853 0.84364 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.97 37.16 0.33 -2.98 16 2 C 0.25 6.13 2.62 -69.08 -0.18 5.95 16 3 H 0.07 1.83 6.91 -51.93 -0.36 1.47 16 4 C -0.53 -13.66 7.95 -34.44 -0.27 -13.93 16 5 H 0.06 1.61 7.43 -52.49 -0.39 1.22 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -23.95 11.32 55.43 0.63 -23.32 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.55 -11.24 2.75 -175.82 -0.48 -11.73 16 13 C 0.08 1.35 8.20 59.85 0.49 1.84 16 14 C 0.49 9.40 7.72 -11.64 -0.09 9.31 16 15 O -0.53 -11.37 15.83 5.49 0.09 -11.28 16 16 C 0.51 7.68 7.61 -11.64 -0.09 7.59 16 17 O -0.50 -7.59 10.71 5.46 0.06 -7.53 16 18 N -0.65 -7.67 5.32 -10.27 -0.05 -7.73 16 19 C 0.17 1.71 6.29 -83.71 -0.53 1.18 16 20 C -0.12 -1.07 9.96 -39.40 -0.39 -1.46 16 21 C -0.08 -0.69 9.61 -39.43 -0.38 -1.07 16 22 C 0.09 0.88 6.68 -83.52 -0.56 0.33 16 23 N -0.23 -2.37 3.56 -10.44 -0.04 -2.40 16 24 C -0.05 -0.37 10.92 -16.68 -0.18 -0.55 16 25 C -0.05 -0.38 12.05 -17.73 -0.21 -0.59 16 26 N -0.27 -3.19 12.39 30.24 0.37 -2.81 16 27 N -0.08 -1.00 12.41 60.35 0.75 -0.25 16 28 C -0.09 -0.78 9.45 -39.44 -0.37 -1.15 16 29 C -0.10 -1.02 8.69 -39.40 -0.34 -1.36 16 30 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 35 H 0.08 1.43 7.12 -51.93 -0.37 1.06 16 36 H 0.08 1.29 5.84 -51.93 -0.30 0.98 16 37 H 0.43 4.45 8.30 -40.82 -0.34 4.11 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.15 1.23 7.69 -52.49 -0.40 0.83 16 40 H 0.19 0.68 7.10 -52.49 -0.37 0.30 16 41 H 0.19 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 0.77 6.76 -52.49 -0.35 0.41 16 43 H 0.16 1.66 6.23 -52.49 -0.33 1.33 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -31.51 364.99 -5.83 -37.34 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.76 Total: 4.19 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -2.87 Total: 4.71 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 1.18 Total: -48.24 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.15 Total: -18.81 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.51 -5.83 -37.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131900025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.405 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds