Wall clock time and date at job start Wed Apr 1 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47148 * 2 1 4 4 C 1.50703 * 109.47174 * 240.00531 * 2 1 3 5 5 H 1.08000 * 119.99834 * 240.00589 * 4 2 1 6 6 C 1.37881 * 119.99939 * 59.99250 * 4 2 1 7 7 N 1.31508 * 120.00257 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99481 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47354 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46614 * 120.00454 * 8 6 4 11 11 H 1.48500 * 109.46674 * 240.00176 * 8 6 4 12 12 N 1.46497 * 109.47436 * 120.00258 * 2 1 3 13 13 C 1.46497 * 119.99738 * 59.99604 * 12 2 1 14 14 C 1.34777 * 120.00000 * 239.99868 * 12 2 1 15 15 O 1.21363 * 120.00084 * 354.34288 * 14 12 2 16 16 C 1.49340 * 120.00093 * 174.34033 * 14 12 2 17 17 O 1.21389 * 119.99777 * 359.87377 * 16 14 12 18 18 N 1.34770 * 120.00165 * 179.88357 * 16 14 12 19 19 C 1.39765 * 119.99964 * 185.11022 * 18 16 14 20 20 C 1.38960 * 120.00997 * 144.56958 * 19 18 16 21 21 C 1.38000 * 119.98556 * 179.97438 * 20 19 18 22 22 C 1.38871 * 120.01161 * 359.97438 * 21 20 19 23 23 N 1.40290 * 119.98506 * 179.97438 * 22 21 20 24 24 C 1.36100 * 125.93888 * 179.97438 * 23 22 21 25 25 C 1.35383 * 106.04975 * 179.97438 * 24 23 22 26 26 N 1.33764 * 106.53649 * 359.97438 * 25 24 23 27 27 N 1.28611 * 109.05945 * 0.02562 * 26 25 24 28 28 C 1.38862 * 120.02232 * 0.27746 * 22 21 20 29 29 C 1.38003 * 120.01164 * 359.48427 * 28 22 21 30 30 H 1.08999 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46573 * 300.00044 * 1 2 3 32 32 H 1.09001 * 109.47246 * 59.99655 * 1 2 3 33 33 H 0.96997 * 120.00290 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47570 * 264.05457 * 13 12 2 35 35 H 1.08999 * 109.47283 * 24.06360 * 13 12 2 36 36 H 1.09000 * 109.46848 * 144.06223 * 13 12 2 37 37 H 0.97001 * 120.00411 * 5.10313 * 18 16 14 38 38 H 1.07996 * 120.00960 * 359.95980 * 20 19 18 39 39 H 1.08001 * 119.99169 * 180.02562 * 21 20 19 40 40 H 1.07999 * 126.97378 * 359.70846 * 24 23 22 41 41 H 1.07997 * 126.73261 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.99553 * 179.75099 * 28 22 21 43 43 H 1.07997 * 120.00567 * 180.23242 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1455 -2.2874 -3.6039 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.1714 1.0921 1.8423 16 6 3.1867 -0.6977 3.3628 17 8 2.8067 -1.8248 3.6048 18 7 3.9635 -0.0436 4.2488 19 6 4.4199 -0.6993 5.3957 20 6 5.6838 -0.4184 5.9004 21 6 6.1336 -1.0657 7.0331 22 6 5.3234 -1.9973 7.6688 23 7 5.7815 -2.6554 8.8199 24 6 5.0922 -3.5850 9.5363 25 6 5.9053 -3.9507 10.5551 26 7 7.0315 -3.2424 10.4165 27 7 6.9272 -2.4859 9.3817 28 6 4.0624 -2.2822 7.1618 29 6 3.6096 -1.6318 6.0320 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 0.7093 1.1619 -3.4843 34 1 0.7980 -2.1451 2.0871 35 1 1.4267 -2.5698 0.4769 36 1 2.5055 -2.6082 1.8921 37 1 4.2060 0.8822 4.0907 38 1 6.3139 0.3062 5.4062 39 1 7.1158 -0.8472 7.4256 40 1 4.0968 -3.9527 9.3355 41 1 5.6874 -4.6728 11.3280 42 1 3.4342 -3.0097 7.6542 43 1 2.6274 -1.8507 5.6399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131900025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:04 Heat of formation + Delta-G solvation = 67.595361 kcal Electronic energy + Delta-G solvation = -28584.392115 eV Core-core repulsion = 24439.559104 eV Total energy + Delta-G solvation = -4144.833012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.43102 -42.25438 -40.65939 -39.38645 -37.61711 -36.59686 -34.86847 -34.50391 -32.73916 -31.73594 -31.47164 -30.25917 -27.86214 -27.33910 -26.50321 -24.96297 -24.67238 -23.03924 -22.68602 -21.92930 -20.79340 -19.72752 -19.12450 -18.67566 -18.31341 -17.63431 -17.51587 -17.16582 -16.86491 -16.31788 -16.26933 -16.05857 -15.60922 -15.16420 -15.06355 -14.82065 -14.56794 -14.44010 -14.19819 -14.09901 -13.96815 -13.56470 -13.27603 -13.02391 -12.95153 -12.76090 -12.72387 -12.58452 -12.36725 -12.24342 -12.18347 -12.10946 -12.03628 -11.23962 -11.16168 -10.59260 -10.46975 -10.40699 -10.17918 -9.55412 -9.21787 -8.17833 -6.33579 -0.60063 0.14997 0.29263 0.93440 1.19345 1.31901 1.41376 1.44441 1.53793 1.54840 2.07935 2.37688 2.55094 2.57304 3.11181 3.23525 3.37469 3.56302 3.71867 3.93662 4.01041 4.17631 4.26887 4.31202 4.47200 4.53110 4.64597 4.71784 4.73645 4.85942 4.88019 4.97437 5.00776 5.05136 5.11626 5.18938 5.28207 5.38972 5.40707 5.49156 5.61662 5.80115 5.86229 5.97836 6.10159 6.44079 6.62838 6.72888 6.97122 7.37058 7.38681 8.86880 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.027963 B = 0.001954 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.092437 B =14323.024806 C =14378.398025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.258 3.742 3 H 0.024 0.976 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.275 1.275 11 H -0.284 1.284 12 N -0.562 5.562 13 C 0.083 3.917 14 C 0.486 3.514 15 O -0.563 6.563 16 C 0.523 3.477 17 O -0.499 6.499 18 N -0.638 5.638 19 C 0.145 3.855 20 C -0.114 4.114 21 C -0.084 4.084 22 C 0.088 3.912 23 N -0.241 5.241 24 C -0.039 4.039 25 C -0.052 4.052 26 N -0.302 5.302 27 N -0.121 5.121 28 C -0.083 4.083 29 C -0.108 4.108 30 H 0.046 0.954 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.266 0.734 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.432 0.568 38 H 0.163 0.837 39 H 0.149 0.851 40 H 0.236 0.764 41 H 0.228 0.772 42 H 0.170 0.830 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -8.297 22.061 23.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.157 3.843 3 H 0.042 0.958 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.200 1.200 11 H -0.210 1.210 12 N -0.292 5.292 13 C -0.059 4.059 14 C 0.268 3.732 15 O -0.444 6.444 16 C 0.306 3.694 17 O -0.373 6.373 18 N -0.285 5.285 19 C 0.050 3.950 20 C -0.134 4.134 21 C -0.104 4.104 22 C -0.003 4.003 23 N -0.029 5.029 24 C -0.188 4.188 25 C -0.208 4.208 26 N -0.167 5.167 27 N -0.098 5.098 28 C -0.104 4.104 29 C -0.128 4.128 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.272 0.728 38 H 0.180 0.820 39 H 0.166 0.834 40 H 0.252 0.748 41 H 0.244 0.756 42 H 0.188 0.812 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.828 -7.675 21.879 23.683 hybrid contribution -0.635 -0.103 -1.218 1.378 sum 4.193 -7.778 20.661 22.471 Atomic orbital electron populations 1.21900 0.96398 1.00437 1.00488 1.18822 0.92068 0.92662 0.80723 0.95792 1.21531 1.32216 1.13196 0.90929 0.92154 1.25668 0.94995 0.95618 1.01829 1.69992 1.36967 1.23600 1.24568 0.85421 0.78221 0.78487 0.78978 1.19177 1.20034 1.21003 1.48234 1.45915 1.13646 1.21390 1.22102 1.02104 0.79763 1.01895 1.20198 0.81030 0.86394 0.85569 1.90715 1.55343 1.20127 1.78198 1.20074 0.79120 0.85757 0.84495 1.90686 1.52205 1.17996 1.76418 1.43115 1.49057 1.16918 1.19369 1.18104 0.93588 0.96305 0.86970 1.21042 0.93409 1.02177 0.96798 1.20854 1.00329 0.94497 0.94731 1.17877 0.96211 0.98682 0.87528 1.44893 1.11626 1.27183 1.19189 1.24633 1.03474 0.95691 0.94962 1.24338 0.90242 1.03981 1.02232 1.75068 1.23988 1.07197 1.10482 1.78328 1.03304 1.21805 1.06411 1.20979 0.93098 1.00446 0.95829 1.21260 1.00901 0.96580 0.94095 0.93481 0.95553 0.90839 0.92454 0.91443 0.91131 0.89207 0.72838 0.81970 0.83360 0.74769 0.75576 0.81217 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 8.97 71.98 0.65 -5.45 16 2 C 0.26 12.73 2.62 44.25 0.12 12.85 16 3 H 0.02 1.38 6.91 -2.39 -0.02 1.37 16 4 C -0.54 -28.25 7.95 25.60 0.20 -28.05 16 5 H 0.06 3.11 7.43 -2.91 -0.02 3.09 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -50.25 11.32 21.45 0.24 -50.01 16 8 Si 0.96 41.75 29.54 68.60 2.03 43.77 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 N -0.56 -23.03 2.75 -828.51 -2.28 -25.31 16 13 C 0.08 2.79 8.20 127.77 1.05 3.84 16 14 C 0.49 18.61 7.72 87.23 0.67 19.29 16 15 O -0.56 -24.67 15.83 -3.29 -0.05 -24.72 16 16 C 0.52 15.19 7.61 87.24 0.66 15.86 16 17 O -0.50 -14.33 10.71 -3.37 -0.04 -14.36 16 18 N -0.64 -14.24 5.32 -304.77 -1.62 -15.86 16 19 C 0.15 2.74 6.29 38.22 0.24 2.98 16 20 C -0.11 -1.77 9.96 22.39 0.22 -1.55 16 21 C -0.08 -1.38 9.61 22.36 0.21 -1.17 16 22 C 0.09 1.47 6.68 38.09 0.25 1.73 16 23 N -0.24 -4.38 3.56 -186.95 -0.67 -5.05 16 24 C -0.04 -0.46 10.92 83.37 0.91 0.45 16 25 C -0.05 -0.72 12.05 83.74 1.01 0.29 16 26 N -0.30 -6.93 12.39 -58.24 -0.72 -7.66 16 27 N -0.12 -2.87 12.41 37.02 0.46 -2.41 16 28 C -0.08 -1.11 9.45 22.36 0.21 -0.90 16 29 C -0.11 -1.89 8.69 22.39 0.19 -1.69 16 30 H 0.05 1.97 7.67 -2.39 -0.02 1.95 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 33 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 34 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 35 H 0.07 2.48 7.12 -2.39 -0.02 2.46 16 36 H 0.09 2.81 5.84 -2.39 -0.01 2.80 16 37 H 0.43 8.68 8.30 -92.71 -0.77 7.91 16 38 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.15 2.39 7.69 -2.91 -0.02 2.37 16 40 H 0.24 0.44 7.10 -2.91 -0.02 0.42 16 41 H 0.23 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.17 1.11 6.76 -2.91 -0.02 1.09 16 43 H 0.15 2.86 6.23 -2.91 -0.02 2.84 16 Total: -1.00 -70.18 364.99 4.72 -65.46 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.31 Total: 16.21 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 7.06 Total: 19.93 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -4.59 Total: -106.29 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.09 Total: -39.08 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -70.18 4.72 -65.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131900025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.057 kcal (2) G-P(sol) polarization free energy of solvation -70.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds