Wall clock time and date at job start Wed Apr 1 2020 01:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47511 * 2 1 4 4 C 1.50702 * 109.47060 * 119.99918 * 2 1 3 5 5 H 1.08003 * 120.00147 * 119.99118 * 4 2 1 6 6 C 1.37880 * 119.99860 * 300.00099 * 4 2 1 7 7 N 1.31521 * 119.99692 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99895 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47048 * 90.00711 * 8 6 4 10 10 H 1.48509 * 109.46749 * 210.00189 * 8 6 4 11 11 H 1.48499 * 109.47153 * 330.00006 * 8 6 4 12 12 N 1.46499 * 109.46902 * 239.99389 * 2 1 3 13 13 C 1.46499 * 120.00669 * 300.00438 * 12 2 1 14 14 C 1.34781 * 119.99824 * 120.00527 * 12 2 1 15 15 O 1.21365 * 119.99574 * 356.43298 * 14 12 2 16 16 C 1.49339 * 120.00344 * 176.43395 * 14 12 2 17 17 O 1.21385 * 119.99569 * 5.92135 * 16 14 12 18 18 N 1.34771 * 120.00240 * 185.92119 * 16 14 12 19 19 C 1.39741 * 120.00066 * 175.31675 * 18 16 14 20 20 C 1.38971 * 120.00870 * 214.84215 * 19 18 16 21 21 C 1.37983 * 119.98899 * 179.74489 * 20 19 18 22 22 C 1.38890 * 120.00608 * 0.53107 * 21 20 19 23 23 N 1.40232 * 119.99007 * 179.70297 * 22 21 20 24 24 N 1.28598 * 124.61306 * 179.71844 * 23 22 21 25 25 C 1.31438 * 108.72251 * 179.89150 * 24 23 22 26 26 C 1.39709 * 105.88659 * 0.35529 * 25 24 23 27 27 N 1.28603 * 124.60661 * 0.02562 * 23 22 21 28 28 C 1.38881 * 120.02169 * 359.72066 * 22 21 20 29 29 C 1.37984 * 120.01220 * 0.02562 * 28 22 21 30 30 H 1.09004 * 109.46943 * 60.00245 * 1 2 3 31 31 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46999 * 300.00116 * 1 2 3 33 33 H 0.97002 * 119.99183 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47485 * 95.97360 * 13 12 2 35 35 H 1.08995 * 109.47319 * 215.98248 * 13 12 2 36 36 H 1.09006 * 109.46882 * 335.97832 * 13 12 2 37 37 H 0.97007 * 120.00161 * 355.32177 * 18 16 14 38 38 H 1.07997 * 120.00381 * 359.97438 * 20 19 18 39 39 H 1.07995 * 119.99880 * 180.27561 * 21 20 19 40 40 H 1.08000 * 127.05879 * 180.17642 * 25 24 23 41 41 H 1.08001 * 127.05272 * 179.81758 * 26 25 24 42 42 H 1.08006 * 119.99515 * 180.02562 * 28 22 21 43 43 H 1.08001 * 120.00845 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1380 -0.8590 3.5566 8 14 0.6258 1.2799 2.6540 9 1 -0.8021 0.8745 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1773 1.4922 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0933 -1.4280 14 6 2.7932 -0.0358 -2.0833 15 8 3.0332 1.1433 -1.9251 16 6 3.3566 -0.7610 -3.2610 17 8 3.0310 -1.9099 -3.4788 18 7 4.2264 -0.1399 -4.0819 19 6 4.8285 -0.8470 -5.1261 20 6 6.1364 -0.5590 -5.4971 21 6 6.7323 -1.2611 -6.5247 22 6 6.0214 -2.2479 -7.1954 23 7 6.6252 -2.9569 -8.2438 24 7 6.0530 -3.8891 -8.9200 25 6 6.8981 -4.3353 -9.8224 26 6 8.0709 -3.5969 -9.6462 27 7 7.8285 -2.7671 -8.6561 28 6 4.7125 -2.5324 -6.8284 29 6 4.1175 -1.8344 -5.7975 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.9039 -0.5273 4.4376 34 1 0.7981 -2.1452 -2.0876 35 1 2.5055 -2.6085 -1.8916 36 1 1.4259 -2.5698 -0.4770 37 1 4.4346 0.7981 -3.9480 38 1 6.6876 0.2116 -4.9788 39 1 7.7502 -1.0405 -6.8102 40 1 6.7230 -5.1149 -10.5490 41 1 8.9884 -3.6886 -10.2085 42 1 4.1602 -3.3001 -7.3500 43 1 3.0995 -2.0554 -5.5124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132163446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:23 Heat of formation + Delta-G solvation = 112.065853 kcal Electronic energy + Delta-G solvation = -28666.596966 eV Core-core repulsion = 24523.692340 eV Total energy + Delta-G solvation = -4142.904626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.09960 -41.12381 -39.55277 -38.17187 -36.22510 -35.27385 -33.23684 -33.02495 -32.74502 -31.34871 -30.53560 -29.21478 -26.48721 -25.53110 -25.12436 -24.17244 -23.64958 -22.41868 -21.60478 -20.77936 -19.42483 -18.75343 -17.95721 -17.39494 -17.04147 -16.82732 -16.24765 -15.92512 -15.67810 -15.60416 -15.19973 -14.75116 -14.67058 -14.43218 -13.98499 -13.72788 -13.37870 -13.29151 -13.12627 -12.94452 -12.52361 -12.31750 -12.08630 -11.96349 -11.89637 -11.71563 -11.28686 -11.22090 -11.05559 -10.89610 -10.78728 -10.76504 -10.24953 -9.95173 -9.72919 -9.45629 -9.43094 -8.99883 -8.73266 -8.26287 -7.97506 -6.23822 -4.26419 0.30805 0.95080 1.49827 1.90280 1.91124 2.08009 2.42432 3.16994 3.28963 3.30438 3.31370 3.51026 3.74855 3.76549 4.26059 4.42573 4.51079 4.53123 4.61848 4.79801 4.94676 5.01678 5.08486 5.16839 5.39485 5.61901 5.65009 5.70056 5.86162 5.89750 5.98878 6.01440 6.05216 6.11770 6.20281 6.31624 6.32815 6.54060 6.67358 6.69471 6.79659 6.99046 7.09554 7.45017 7.64369 7.91997 7.93395 8.24992 8.43262 8.76895 9.34865 10.88390 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.031370 B = 0.002006 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.356411 B =13956.327114 C =14115.777430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.226 3.774 3 H 0.066 0.934 4 C -0.533 4.533 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.890 5.890 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.543 5.543 13 C 0.066 3.934 14 C 0.497 3.503 15 O -0.536 6.536 16 C 0.512 3.488 17 O -0.493 6.493 18 N -0.651 5.651 19 C 0.161 3.839 20 C -0.126 4.126 21 C -0.080 4.080 22 C 0.116 3.884 23 N -0.098 5.098 24 N -0.287 5.287 25 C -0.022 4.022 26 C -0.022 4.022 27 N -0.289 5.289 28 C -0.080 4.080 29 C -0.105 4.105 30 H 0.035 0.965 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.268 0.732 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.426 0.574 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.202 0.798 41 H 0.202 0.798 42 H 0.146 0.854 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 -3.175 -24.945 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.125 3.875 3 H 0.084 0.916 4 C -0.571 4.571 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.713 3.287 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.273 5.273 13 C -0.077 4.077 14 C 0.278 3.722 15 O -0.415 6.415 16 C 0.296 3.704 17 O -0.367 6.367 18 N -0.298 5.298 19 C 0.066 3.934 20 C -0.147 4.147 21 C -0.102 4.102 22 C 0.025 3.975 23 N 0.010 4.990 24 N -0.126 5.126 25 C -0.205 4.205 26 C -0.205 4.205 27 N -0.128 5.128 28 C -0.101 4.101 29 C -0.126 4.126 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.264 0.736 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.219 0.781 41 H 0.219 0.781 42 H 0.163 0.837 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.950 -2.728 -23.703 24.851 hybrid contribution 0.043 0.479 -0.463 0.668 sum 6.993 -2.249 -24.166 25.258 Atomic orbital electron populations 1.22449 0.98365 1.01552 0.99518 1.19520 0.90553 0.95226 0.82164 0.91625 1.21091 1.33282 1.14558 0.88205 0.90036 1.24857 0.95577 0.96638 0.95530 1.69870 1.44739 1.40020 0.98037 0.86914 0.80506 0.83659 0.77626 1.20237 1.21975 1.18764 1.47883 1.45356 1.12868 1.21209 1.22270 1.01625 0.81279 1.02528 1.19523 0.81722 0.87140 0.83840 1.90729 1.60207 1.15070 1.75473 1.20865 0.79063 0.86624 0.83841 1.90668 1.57394 1.17043 1.71579 1.43285 1.43372 1.15189 1.27941 1.17936 0.91783 0.94889 0.88830 1.20842 0.92697 1.02310 0.98839 1.20667 1.00616 0.93938 0.94947 1.17417 0.93589 0.96533 0.89926 1.44886 1.06325 1.23780 1.24037 1.74120 1.27045 1.04362 1.07123 1.24941 0.91200 1.03844 1.00472 1.24932 1.01594 0.96147 0.97788 1.74099 1.00644 1.24090 1.13998 1.20821 0.92190 1.00104 0.97000 1.21245 1.01572 0.96038 0.93754 0.94610 0.92208 0.92828 0.92244 0.93165 0.88953 0.89843 0.73563 0.83838 0.83617 0.78082 0.78092 0.83663 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 8.67 37.16 0.32 -3.01 16 2 C 0.23 5.25 2.22 -69.08 -0.15 5.09 16 3 H 0.07 1.65 5.96 -51.93 -0.31 1.34 16 4 C -0.53 -14.27 8.53 -34.44 -0.29 -14.56 16 5 H 0.08 2.36 7.68 -52.48 -0.40 1.96 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 8 Si 0.88 21.01 24.37 -169.99 -4.14 16.87 16 9 H -0.28 -6.28 6.87 56.52 0.39 -5.90 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.26 -6.10 6.53 56.52 0.37 -5.74 16 12 N -0.54 -10.98 2.75 -175.82 -0.48 -11.47 16 13 C 0.07 1.15 8.49 59.85 0.51 1.65 16 14 C 0.50 9.36 7.73 -11.64 -0.09 9.27 16 15 O -0.54 -11.07 15.82 5.48 0.09 -10.98 16 16 C 0.51 7.86 7.61 -11.64 -0.09 7.77 16 17 O -0.49 -7.80 10.56 5.47 0.06 -7.75 16 18 N -0.65 -7.92 5.32 -10.28 -0.05 -7.97 16 19 C 0.16 1.81 6.30 -83.71 -0.53 1.28 16 20 C -0.13 -1.17 9.96 -39.40 -0.39 -1.57 16 21 C -0.08 -0.79 9.58 -39.43 -0.38 -1.17 16 22 C 0.12 1.30 6.72 -83.53 -0.56 0.74 16 23 N -0.10 -1.14 4.13 32.51 0.13 -1.00 16 24 N -0.29 -3.18 11.21 30.69 0.34 -2.83 16 25 C -0.02 -0.17 12.20 -17.17 -0.21 -0.38 16 26 C -0.02 -0.17 12.20 -17.17 -0.21 -0.38 16 27 N -0.29 -3.11 11.21 30.69 0.34 -2.77 16 28 C -0.08 -0.87 9.58 -39.44 -0.38 -1.25 16 29 C -0.11 -1.20 8.69 -39.40 -0.34 -1.55 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.16 7.67 -51.93 -0.40 0.77 16 32 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 33 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.57 5.36 -51.94 -0.28 1.29 16 36 H 0.08 1.55 7.12 -51.93 -0.37 1.18 16 37 H 0.43 4.51 8.30 -40.82 -0.34 4.17 16 38 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.15 1.27 7.62 -52.49 -0.40 0.87 16 40 H 0.20 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.20 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.15 1.48 7.62 -52.48 -0.40 1.08 16 43 H 0.16 1.86 6.22 -52.49 -0.33 1.53 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -33.00 359.35 -5.11 -38.11 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.69 Total: 5.71 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.89 Total: 4.00 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 1.06 Total: -51.37 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.14 Total: -18.73 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.14 Total: 16.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.00 -5.11 -38.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132163446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.176 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds