Wall clock time and date at job start Wed Apr 1 2020 01:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47511 * 2 1 4 4 C 1.50702 * 109.47060 * 119.99918 * 2 1 3 5 5 H 1.08003 * 120.00147 * 119.99118 * 4 2 1 6 6 C 1.37880 * 119.99860 * 300.00099 * 4 2 1 7 7 N 1.31521 * 119.99692 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99895 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47048 * 90.00711 * 8 6 4 10 10 H 1.48509 * 109.46749 * 210.00189 * 8 6 4 11 11 H 1.48499 * 109.47153 * 330.00006 * 8 6 4 12 12 N 1.46499 * 109.46902 * 239.99389 * 2 1 3 13 13 C 1.46499 * 120.00669 * 300.00438 * 12 2 1 14 14 C 1.34781 * 119.99824 * 120.00527 * 12 2 1 15 15 O 1.21365 * 119.99574 * 356.43298 * 14 12 2 16 16 C 1.49339 * 120.00344 * 176.43395 * 14 12 2 17 17 O 1.21385 * 119.99569 * 5.92135 * 16 14 12 18 18 N 1.34771 * 120.00240 * 185.92119 * 16 14 12 19 19 C 1.39741 * 120.00066 * 175.31675 * 18 16 14 20 20 C 1.38971 * 120.00870 * 214.84215 * 19 18 16 21 21 C 1.37983 * 119.98899 * 179.74489 * 20 19 18 22 22 C 1.38890 * 120.00608 * 0.53107 * 21 20 19 23 23 N 1.40232 * 119.99007 * 179.70297 * 22 21 20 24 24 N 1.28598 * 124.61306 * 179.71844 * 23 22 21 25 25 C 1.31438 * 108.72251 * 179.89150 * 24 23 22 26 26 C 1.39709 * 105.88659 * 0.35529 * 25 24 23 27 27 N 1.28603 * 124.60661 * 0.02562 * 23 22 21 28 28 C 1.38881 * 120.02169 * 359.72066 * 22 21 20 29 29 C 1.37984 * 120.01220 * 0.02562 * 28 22 21 30 30 H 1.09004 * 109.46943 * 60.00245 * 1 2 3 31 31 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46999 * 300.00116 * 1 2 3 33 33 H 0.97002 * 119.99183 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47485 * 95.97360 * 13 12 2 35 35 H 1.08995 * 109.47319 * 215.98248 * 13 12 2 36 36 H 1.09006 * 109.46882 * 335.97832 * 13 12 2 37 37 H 0.97007 * 120.00161 * 355.32177 * 18 16 14 38 38 H 1.07997 * 120.00381 * 359.97438 * 20 19 18 39 39 H 1.07995 * 119.99880 * 180.27561 * 21 20 19 40 40 H 1.08000 * 127.05879 * 180.17642 * 25 24 23 41 41 H 1.08001 * 127.05272 * 179.81758 * 26 25 24 42 42 H 1.08006 * 119.99515 * 180.02562 * 28 22 21 43 43 H 1.08001 * 120.00845 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1380 -0.8590 3.5566 8 14 0.6258 1.2799 2.6540 9 1 -0.8021 0.8745 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1773 1.4922 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0933 -1.4280 14 6 2.7932 -0.0358 -2.0833 15 8 3.0332 1.1433 -1.9251 16 6 3.3566 -0.7610 -3.2610 17 8 3.0310 -1.9099 -3.4788 18 7 4.2264 -0.1399 -4.0819 19 6 4.8285 -0.8470 -5.1261 20 6 6.1364 -0.5590 -5.4971 21 6 6.7323 -1.2611 -6.5247 22 6 6.0214 -2.2479 -7.1954 23 7 6.6252 -2.9569 -8.2438 24 7 6.0530 -3.8891 -8.9200 25 6 6.8981 -4.3353 -9.8224 26 6 8.0709 -3.5969 -9.6462 27 7 7.8285 -2.7671 -8.6561 28 6 4.7125 -2.5324 -6.8284 29 6 4.1175 -1.8344 -5.7975 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.9039 -0.5273 4.4376 34 1 0.7981 -2.1452 -2.0876 35 1 2.5055 -2.6085 -1.8916 36 1 1.4259 -2.5698 -0.4770 37 1 4.4346 0.7981 -3.9480 38 1 6.6876 0.2116 -4.9788 39 1 7.7502 -1.0405 -6.8102 40 1 6.7230 -5.1149 -10.5490 41 1 8.9884 -3.6886 -10.2085 42 1 4.1602 -3.3001 -7.3500 43 1 3.0995 -2.0554 -5.5124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132163446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:22 Heat of formation + Delta-G solvation = 88.658660 kcal Electronic energy + Delta-G solvation = -28667.611978 eV Core-core repulsion = 24523.692340 eV Total energy + Delta-G solvation = -4143.919638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.77640 -42.30747 -40.69655 -39.40369 -37.71454 -36.43559 -34.73386 -34.00208 -33.73026 -32.36252 -32.12138 -30.06858 -27.92274 -27.24104 -26.56099 -24.94083 -24.67849 -23.22583 -22.67681 -21.90362 -20.82675 -19.50836 -19.21777 -18.83582 -18.49995 -17.77086 -17.74173 -17.23063 -16.99679 -16.42024 -16.23350 -16.15481 -15.54202 -15.28222 -15.16457 -15.00295 -14.74516 -14.54167 -14.22383 -14.16617 -14.04836 -13.90197 -13.65391 -13.36687 -13.05817 -12.74125 -12.60755 -12.59838 -12.36409 -12.08465 -12.02553 -11.77815 -11.55444 -11.50154 -11.40095 -10.81939 -10.78320 -10.45315 -10.18253 -9.62071 -9.07749 -8.36330 -6.43084 -0.53700 0.15549 0.29408 1.04591 1.15180 1.26686 1.28962 1.37423 1.45962 1.52329 2.04023 2.27132 2.44544 2.57095 2.98146 3.14469 3.19240 3.72747 3.74944 3.98945 4.00379 4.23750 4.28168 4.39094 4.40307 4.44239 4.51750 4.60435 4.71578 4.74734 4.86872 4.92175 4.97205 5.02276 5.04027 5.07147 5.19669 5.23736 5.35352 5.39294 5.49721 5.54838 5.83384 5.90128 6.11544 6.39151 6.56397 6.62124 6.86717 7.22686 7.26395 8.79369 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.031370 B = 0.002006 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.356411 B =13956.327114 C =14115.777430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.229 3.771 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.937 5.937 8 Si 0.943 3.057 9 H -0.255 1.255 10 H -0.295 1.295 11 H -0.254 1.254 12 N -0.557 5.557 13 C 0.072 3.928 14 C 0.493 3.507 15 O -0.557 6.557 16 C 0.521 3.479 17 O -0.500 6.500 18 N -0.633 5.633 19 C 0.142 3.858 20 C -0.109 4.109 21 C -0.082 4.082 22 C 0.111 3.889 23 N -0.121 5.121 24 N -0.322 5.322 25 C -0.013 4.013 26 C -0.012 4.012 27 N -0.317 5.317 28 C -0.087 4.087 29 C -0.108 4.108 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.270 0.730 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.434 0.566 38 H 0.170 0.830 39 H 0.158 0.842 40 H 0.240 0.760 41 H 0.242 0.758 42 H 0.146 0.854 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 -2.805 -27.599 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.127 3.873 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.576 5.576 8 Si 0.769 3.231 9 H -0.180 1.180 10 H -0.223 1.223 11 H -0.178 1.178 12 N -0.286 5.286 13 C -0.070 4.070 14 C 0.276 3.724 15 O -0.437 6.437 16 C 0.303 3.697 17 O -0.375 6.375 18 N -0.281 5.281 19 C 0.047 3.953 20 C -0.130 4.130 21 C -0.104 4.104 22 C 0.020 3.980 23 N -0.012 5.012 24 N -0.160 5.160 25 C -0.196 4.196 26 C -0.195 4.195 27 N -0.156 5.156 28 C -0.108 4.108 29 C -0.128 4.128 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.274 0.726 38 H 0.188 0.812 39 H 0.175 0.825 40 H 0.257 0.743 41 H 0.258 0.742 42 H 0.164 0.836 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.314 -2.354 -26.397 27.493 hybrid contribution 0.138 0.226 0.143 0.301 sum 7.452 -2.128 -26.254 27.374 Atomic orbital electron populations 1.22327 0.96020 1.02518 1.00424 1.19230 0.92316 0.93864 0.81937 0.93472 1.21276 1.32290 1.13373 0.90077 0.93741 1.25679 0.97066 0.99708 0.95143 1.70007 1.46771 1.42103 0.98686 0.85950 0.79679 0.79915 0.77536 1.18030 1.22269 1.17790 1.47893 1.46119 1.13780 1.20844 1.22306 1.02794 0.79831 1.02025 1.20071 0.80840 0.87035 0.84501 1.90704 1.60606 1.16108 1.76281 1.20088 0.79926 0.86287 0.83368 1.90668 1.58076 1.17100 1.71674 1.43054 1.42225 1.15469 1.27324 1.18024 0.92653 0.95579 0.89070 1.21066 0.91804 1.02039 0.98059 1.20828 1.01063 0.93623 0.94837 1.17673 0.93742 0.96569 0.89983 1.44946 1.06757 1.24699 1.24839 1.74103 1.28485 1.05075 1.08352 1.25711 0.90526 1.03671 0.99696 1.25715 1.02783 0.94468 0.96524 1.74071 1.00638 1.25477 1.15366 1.20788 0.92452 1.00397 0.97160 1.21189 1.01342 0.96252 0.94058 0.92056 0.91308 0.93407 0.92119 0.90746 0.88487 0.91585 0.72608 0.81237 0.82476 0.74342 0.74180 0.83587 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.16 8.67 71.98 0.62 -5.53 16 2 C 0.23 10.58 2.22 44.25 0.10 10.67 16 3 H 0.05 2.36 5.96 -2.39 -0.01 2.35 16 4 C -0.53 -29.18 8.53 25.60 0.22 -28.96 16 5 H 0.04 2.70 7.68 -2.91 -0.02 2.68 16 6 C 0.02 1.31 5.45 84.65 0.46 1.77 16 7 N -0.94 -56.46 13.96 21.45 0.30 -56.16 16 8 Si 0.94 43.19 24.37 68.60 1.67 44.86 16 9 H -0.25 -10.77 6.87 99.48 0.68 -10.09 16 10 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.25 -11.16 6.53 99.48 0.65 -10.51 16 12 N -0.56 -22.43 2.75 -828.52 -2.28 -24.71 16 13 C 0.07 2.51 8.49 127.77 1.08 3.59 16 14 C 0.49 18.43 7.73 87.23 0.67 19.10 16 15 O -0.56 -22.84 15.82 -3.29 -0.05 -22.90 16 16 C 0.52 15.64 7.61 87.24 0.66 16.31 16 17 O -0.50 -15.55 10.56 -3.35 -0.04 -15.59 16 18 N -0.63 -14.75 5.32 -304.78 -1.62 -16.37 16 19 C 0.14 3.02 6.30 38.23 0.24 3.26 16 20 C -0.11 -1.85 9.96 22.39 0.22 -1.63 16 21 C -0.08 -1.51 9.58 22.37 0.21 -1.30 16 22 C 0.11 2.43 6.72 38.11 0.26 2.69 16 23 N -0.12 -2.71 4.13 -51.06 -0.21 -2.92 16 24 N -0.32 -6.74 11.21 -56.81 -0.64 -7.38 16 25 C -0.01 -0.17 12.20 85.11 1.04 0.87 16 26 C -0.01 -0.15 12.20 85.11 1.04 0.89 16 27 N -0.32 -6.31 11.21 -56.81 -0.64 -6.95 16 28 C -0.09 -1.89 9.58 22.36 0.21 -1.67 16 29 C -0.11 -2.43 8.69 22.38 0.19 -2.23 16 30 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.07 2.57 7.67 -2.39 -0.02 2.56 16 32 H 0.05 1.95 3.27 -2.39 -0.01 1.94 16 33 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.10 3.30 5.36 -2.48 -0.01 3.28 16 36 H 0.07 2.50 7.12 -2.38 -0.02 2.49 16 37 H 0.43 8.63 8.30 -92.70 -0.77 7.86 16 38 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.16 2.49 7.62 -2.91 -0.02 2.47 16 40 H 0.24 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.24 0.66 8.06 -2.91 -0.02 0.63 16 42 H 0.15 3.04 7.62 -2.91 -0.02 3.02 16 43 H 0.15 3.52 6.22 -2.91 -0.02 3.50 16 Total: -1.00 -73.49 359.35 3.98 -69.51 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.24 Total: 20.75 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 7.24 Total: 17.84 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -5.09 Total: -114.48 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.09 Total: -38.48 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.67 Total: 44.86 kcal Total: -73.49 3.98 -69.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132163446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.173 kcal (2) G-P(sol) polarization free energy of solvation -73.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds