Wall clock time and date at job start Wed Apr 1 2020 02:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46983 * 2 1 4 4 C 1.46503 * 120.00049 * 275.00198 * 3 2 1 5 5 C 1.50705 * 109.46989 * 274.99912 * 4 3 2 6 6 H 1.07998 * 119.99732 * 359.97438 * 5 4 3 7 7 C 1.37868 * 119.99943 * 180.02562 * 5 4 3 8 8 N 1.31522 * 120.00355 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00071 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47235 * 59.99853 * 9 7 5 11 11 H 1.48500 * 109.47345 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47037 * 299.99856 * 9 7 5 13 13 S 1.65600 * 120.00110 * 95.00148 * 3 2 1 14 14 O 1.42093 * 106.40565 * 156.45909 * 13 3 2 15 15 O 1.42106 * 106.39983 * 23.53725 * 13 3 2 16 16 C 1.76198 * 107.21743 * 270.00220 * 13 3 2 17 17 C 1.39873 * 126.03692 * 269.99653 * 16 13 3 18 18 N 1.30846 * 108.20187 * 179.74476 * 17 16 13 19 19 N 1.40090 * 108.20009 * 0.40121 * 18 17 16 20 20 C 1.46502 * 126.03208 * 179.85614 * 19 18 17 21 21 C 1.53177 * 109.54366 * 264.69248 * 20 19 18 22 22 C 1.53098 * 109.21356 * 183.18424 * 21 20 19 23 23 O 1.42899 * 109.40993 * 57.57693 * 22 21 20 24 24 C 1.42898 * 114.10053 * 298.83671 * 23 22 21 25 25 C 1.53097 * 109.41405 * 61.16391 * 24 23 22 26 26 C 1.34942 * 107.92803 * 359.59444 * 19 18 17 27 27 H 1.08997 * 109.46820 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47164 * 299.99886 * 1 2 3 29 29 H 1.09003 * 109.47039 * 59.99959 * 1 2 3 30 30 H 1.08996 * 109.46692 * 240.00343 * 2 1 3 31 31 H 1.08997 * 109.47352 * 120.00309 * 2 1 3 32 32 H 1.09000 * 109.47369 * 34.99886 * 4 3 2 33 33 H 1.09001 * 109.47076 * 155.00584 * 4 3 2 34 34 H 0.96998 * 120.00400 * 179.97438 * 8 7 5 35 35 H 1.08001 * 125.90000 * 359.97438 * 17 16 13 36 36 H 1.09005 * 109.61268 * 24.91256 * 20 19 18 37 37 H 1.09002 * 109.52487 * 63.24635 * 21 20 19 38 38 H 1.09004 * 109.52023 * 303.12255 * 21 20 19 39 39 H 1.08999 * 109.47354 * 177.55660 * 22 21 20 40 40 H 1.08999 * 109.48099 * 297.59428 * 22 21 20 41 41 H 1.09007 * 109.48578 * 181.14563 * 24 23 22 42 42 H 1.09003 * 109.48319 * 301.17106 * 24 23 22 43 43 H 1.09002 * 109.52138 * 62.29619 * 25 24 23 44 44 H 1.09005 * 109.52063 * 182.42027 * 25 24 23 45 45 H 1.08000 * 126.12425 * 180.22194 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7889 -1.8824 6 1 4.1724 1.1118 -1.3836 7 6 3.8529 2.3614 -3.0843 8 7 3.0284 3.1872 -3.6910 9 14 5.5093 1.9644 -3.8513 10 1 5.5986 0.5047 -4.1086 11 1 5.6512 2.7019 -5.1324 12 1 6.5948 2.3707 -2.9228 13 16 2.4122 2.1202 1.4287 14 8 3.3284 3.1570 1.1050 15 8 2.7096 1.0799 2.3499 16 6 0.9555 2.9117 2.0254 17 6 0.5552 4.2214 1.7407 18 7 -0.5766 4.4460 2.3577 19 7 -0.9279 3.2877 3.0629 20 6 -2.1236 3.1124 3.8911 21 6 -1.7803 3.4044 5.3551 22 6 -3.0134 3.1422 6.2238 23 8 -3.4427 1.7912 6.0435 24 6 -3.8234 1.4738 4.7032 25 6 -2.6229 1.6690 3.7734 26 6 0.0265 2.3601 2.8400 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3617 1.8098 -1.9453 33 1 2.0922 3.1803 -1.0756 34 1 3.2805 3.5903 -4.5365 35 1 1.0864 4.9244 1.1162 36 1 -2.9040 3.7958 3.5563 37 1 -1.4775 4.4465 5.4574 38 1 -0.9649 2.7552 5.6744 39 1 -2.7615 3.3069 7.2714 40 1 -3.8149 3.8205 5.9313 41 1 -4.1553 0.4366 4.6554 42 1 -4.6357 2.1302 4.3909 43 1 -1.8249 0.9840 4.0601 44 1 -2.9226 1.4689 2.7446 45 1 0.0455 1.3573 3.2403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133007262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:12 Heat of formation + Delta-G solvation = -43.669515 kcal Electronic energy + Delta-G solvation = -29053.200223 eV Core-core repulsion = 25006.693604 eV Total energy + Delta-G solvation = -4046.506618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.49445 -39.60526 -36.52454 -35.99678 -35.15808 -35.04662 -32.63040 -31.79067 -30.72569 -30.33882 -29.92849 -26.56073 -25.44234 -24.24355 -23.10375 -22.37559 -21.72998 -21.30504 -20.17221 -18.59404 -17.72834 -16.87890 -16.62488 -16.49398 -16.23487 -15.52033 -15.43309 -15.38586 -15.09034 -14.92945 -14.39874 -14.00602 -13.93714 -13.73200 -13.32342 -13.02954 -12.89815 -12.87154 -12.20569 -12.05860 -11.97395 -11.94338 -11.65233 -11.62016 -11.47163 -11.26770 -11.22334 -10.99859 -10.96372 -10.87849 -10.50398 -10.42502 -10.35327 -10.21666 -9.94826 -9.72150 -9.57248 -9.11226 -8.39411 -8.01350 -6.01704 -4.05410 1.14832 1.58396 2.19399 2.45163 3.31212 3.37261 3.40786 3.45556 3.82607 3.90029 4.09205 4.29552 4.38986 4.41505 4.46589 4.52364 4.58820 4.70403 4.81308 4.90807 5.03193 5.12267 5.14171 5.20097 5.32697 5.37952 5.39642 5.43154 5.53331 5.61772 5.65208 5.72372 5.81314 5.98672 6.27868 6.47039 6.58223 6.60403 6.66993 6.73602 7.29544 7.45877 7.46563 7.66689 7.95874 8.25522 8.96788 9.59480 11.06824 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.002973 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.263262 B = 9415.766349 C = 9620.869438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.982 5.982 4 C 0.258 3.742 5 C -0.527 4.527 6 H 0.061 0.939 7 C 0.063 3.937 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.274 1.274 13 S 2.714 3.286 14 O -0.944 6.944 15 O -0.985 6.985 16 C -0.804 4.804 17 C 0.140 3.860 18 N -0.298 5.298 19 N -0.361 5.361 20 C 0.156 3.844 21 C -0.170 4.170 22 C 0.066 3.934 23 O -0.379 6.379 24 C 0.068 3.932 25 C -0.173 4.173 26 C 0.170 3.830 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.199 0.801 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.698 -2.939 16.554 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 N -0.821 5.821 4 C 0.136 3.864 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.199 1.199 13 S 2.800 3.200 14 O -0.934 6.934 15 O -0.975 6.975 16 C -0.900 4.900 17 C -0.049 4.049 18 N -0.117 5.117 19 N -0.139 5.139 20 C 0.054 3.946 21 C -0.209 4.209 22 C -0.011 4.011 23 O -0.298 6.298 24 C -0.010 4.010 25 C -0.212 4.212 26 C 0.017 3.983 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.216 0.784 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.075 0.925 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.038 -2.057 17.258 23.650 hybrid contribution 0.811 -0.227 -1.074 1.365 sum -15.227 -2.285 16.184 22.339 Atomic orbital electron populations 1.22254 0.97605 1.01239 1.01860 1.21157 0.92814 0.83264 1.03700 1.57439 1.81234 1.21024 1.22445 1.19047 0.97291 0.91311 0.78733 1.21465 1.02065 1.27669 1.05485 0.92126 1.24914 0.97284 0.94855 0.96894 1.69912 1.36137 1.30230 1.17290 0.86597 0.84350 0.78363 0.78385 1.20234 1.21266 1.19943 1.01289 0.73224 0.73124 0.72362 1.93583 1.58525 1.57936 1.83389 1.93469 1.83484 1.56951 1.63585 1.32212 1.27637 1.08318 1.21859 1.23621 0.91775 0.94069 0.95475 1.77404 1.16564 1.05106 1.12588 1.49266 1.18100 1.09867 1.36667 1.21372 0.84984 0.98564 0.89639 1.22720 1.00474 1.04197 0.93492 1.22583 0.94400 0.83601 1.00538 1.87986 1.85333 1.28740 1.27710 1.22559 0.94440 1.02419 0.81544 1.22716 1.00789 0.95139 1.02526 1.22282 0.86932 0.95571 0.93469 0.92228 0.93875 0.91928 0.89507 0.90420 0.94707 0.94295 0.92692 0.78391 0.87481 0.89506 0.89931 0.87862 0.92501 0.87615 0.92444 0.89530 0.89169 0.79870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.12 1.96 6.40 -4.04 -0.03 1.94 16 3 N -0.98 -19.97 2.77 -115.66 -0.32 -20.29 16 4 C 0.26 6.34 5.10 -5.19 -0.03 6.31 16 5 C -0.53 -14.60 9.38 -34.44 -0.32 -14.92 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 S 2.71 53.90 5.79 -107.50 -0.62 53.28 16 14 O -0.94 -22.41 16.84 -57.17 -0.96 -23.37 16 15 O -0.98 -19.83 16.40 -57.17 -0.94 -20.77 16 16 C -0.80 -13.31 6.17 -40.01 -0.25 -13.56 16 17 C 0.14 2.30 11.82 -17.36 -0.21 2.10 16 18 N -0.30 -4.61 12.58 30.63 0.39 -4.22 16 19 N -0.36 -4.61 3.54 -54.68 -0.19 -4.80 16 20 C 0.16 1.39 3.30 -67.74 -0.22 1.16 16 21 C -0.17 -1.32 5.74 -26.59 -0.15 -1.47 16 22 C 0.07 0.41 6.84 37.21 0.25 0.66 16 23 O -0.38 -2.94 10.76 -35.23 -0.38 -3.32 16 24 C 0.07 0.39 6.84 37.21 0.25 0.65 16 25 C -0.17 -1.21 5.13 -26.59 -0.14 -1.34 16 26 C 0.17 2.31 9.52 -17.23 -0.16 2.14 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.54 7.31 -51.93 -0.38 0.16 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 31 H 0.08 1.21 6.91 -51.93 -0.36 0.85 16 32 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.04 1.01 7.61 -51.93 -0.40 0.62 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 35 H 0.20 3.07 8.06 -52.49 -0.42 2.65 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.61 7.01 -51.93 -0.36 0.25 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.18 1.98 7.18 -52.49 -0.38 1.60 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -34.93 382.59 -9.17 -44.10 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.91 Total: -1.21 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.71 Total: -16.62 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.61 Total: -54.56 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -2.28 Total: -47.46 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 53.90 SS G_CDS: -0.62 Total: 53.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.93 -9.17 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133007262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.435 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds