Wall clock time and date at job start Wed Apr 1 2020 01:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46973 * 2 1 4 4 N 1.46498 * 109.46750 * 240.00297 * 2 1 3 5 5 C 1.34774 * 120.00066 * 84.99926 * 4 2 1 6 6 O 1.21594 * 119.99982 * 0.02562 * 5 4 2 7 7 C 1.47542 * 119.99951 * 179.97438 * 5 4 2 8 8 C 1.39663 * 120.19571 * 0.02562 * 7 5 4 9 9 C 1.37823 * 119.91632 * 179.97438 * 8 7 5 10 10 C 1.38578 * 120.32709 * 359.97438 * 9 8 7 11 11 C 1.38026 * 120.39805 * 359.97438 * 10 9 8 12 12 C 1.38829 * 120.07252 * 0.02562 * 11 10 9 13 13 O 1.35523 * 120.15992 * 179.97438 * 12 11 10 14 14 C 1.34812 * 117.00069 * 354.40356 * 13 12 11 15 15 H 1.07998 * 119.99529 * 5.07442 * 14 13 12 16 16 C 1.38692 * 120.00205 * 185.07392 * 14 13 12 17 17 N 1.31524 * 120.00115 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00356 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47162 * 89.99765 * 18 16 14 20 20 H 1.48503 * 109.47195 * 210.00351 * 18 16 14 21 21 H 1.48501 * 109.46638 * 330.00095 * 18 16 14 22 22 C 1.50697 * 109.46968 * 120.00324 * 2 1 3 23 23 N 1.31072 * 126.66043 * 75.02503 * 22 2 1 24 24 N 1.28839 * 107.99217 * 179.97438 * 23 22 2 25 25 N 1.28742 * 109.39922 * 359.97438 * 24 23 22 26 26 N 1.29030 * 108.80508 * 359.74894 * 25 24 23 27 27 C 1.46497 * 126.43597 * 180.24741 * 26 25 24 28 28 C 1.53000 * 117.50105 * 8.92417 * 27 26 25 29 29 C 1.53000 * 117.50048 * 300.26020 * 27 26 25 30 30 H 1.09002 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46692 * 299.99801 * 1 2 3 32 32 H 1.08999 * 109.47435 * 59.99211 * 1 2 3 33 33 H 0.97003 * 119.99730 * 264.99775 * 4 2 1 34 34 H 1.08004 * 120.04127 * 359.95621 * 8 7 5 35 35 H 1.08003 * 119.83828 * 180.02562 * 9 8 7 36 36 H 1.08001 * 119.79947 * 180.02562 * 10 9 8 37 37 H 1.07998 * 119.96343 * 179.74103 * 11 10 9 38 38 H 0.97002 * 120.00579 * 179.97438 * 17 16 14 39 39 H 1.08998 * 115.54623 * 154.59726 * 27 26 25 40 40 H 1.09000 * 117.49851 * 359.97438 * 28 27 26 41 41 H 1.09003 * 117.49846 * 145.02383 * 28 27 26 42 42 H 1.08994 * 117.50084 * 214.98459 * 29 27 26 43 43 H 1.09003 * 117.49677 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3571 6 8 1.8582 1.1617 -2.4116 7 6 2.6392 -0.7135 -3.5617 8 6 2.9725 -2.0686 -3.5037 9 6 3.4313 -2.7125 -4.6326 10 6 3.5635 -2.0223 -5.8269 11 6 3.2369 -0.6832 -5.8995 12 6 2.7732 -0.0181 -4.7725 13 8 2.4525 1.2968 -4.8417 14 6 2.7151 1.9306 -6.0021 15 1 3.0849 1.3733 -6.8501 16 6 2.5105 3.2983 -6.1071 17 7 2.0606 3.9771 -5.0743 18 14 2.8737 4.1765 -7.7153 19 1 1.6549 4.1800 -8.5636 20 1 3.2849 5.5754 -7.4335 21 1 3.9703 3.4722 -8.4271 22 6 2.0323 -0.7105 1.2304 23 7 2.0370 -2.0043 1.4399 24 7 2.5448 -2.2171 2.6047 25 7 2.8647 -1.0925 3.1436 26 7 2.5695 -0.1400 2.3248 27 6 2.7762 1.2933 2.5464 28 6 3.5886 1.7083 3.7747 29 6 2.0744 1.9310 3.7472 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.2490 -1.6317 -1.1527 34 1 2.8712 -2.6110 -2.5753 35 1 3.6883 -3.7605 -4.5864 36 1 3.9234 -2.5355 -6.7064 37 1 3.3466 -0.1511 -6.8329 38 1 1.9178 4.9338 -5.1474 39 1 2.8814 1.8979 1.6456 40 1 3.9690 0.9149 4.4181 41 1 4.2281 2.5862 3.6821 42 1 1.7183 2.9551 3.6364 43 1 1.4585 1.2841 4.3720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190284939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:11 Heat of formation + Delta-G solvation = 120.762471 kcal Electronic energy + Delta-G solvation = -29439.985886 eV Core-core repulsion = 25297.458373 eV Total energy + Delta-G solvation = -4142.527513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.37100 -39.75443 -38.38900 -38.23302 -36.40246 -35.59000 -33.89309 -32.44786 -32.33171 -30.93741 -29.44583 -28.94318 -25.61995 -25.44131 -24.94481 -23.47089 -23.02093 -22.14809 -21.55328 -20.95216 -19.91389 -18.40617 -18.06128 -17.62920 -17.15185 -16.35512 -16.11830 -15.59541 -14.94017 -14.64358 -14.59436 -14.29648 -14.10692 -13.82085 -13.76890 -13.66196 -13.41209 -12.87066 -12.70581 -12.56350 -12.53209 -12.33970 -12.15253 -12.08143 -11.76268 -11.71800 -11.37015 -11.24043 -11.16604 -11.12811 -10.93969 -10.81313 -10.63300 -10.49926 -10.16278 -9.64420 -9.00013 -8.92429 -8.86584 -8.32014 -7.35710 -6.50058 -4.09466 0.96048 1.58593 1.65746 2.05311 2.29094 3.02545 3.08631 3.09387 3.13991 3.36701 3.53105 3.68116 3.83682 3.89337 4.10454 4.24445 4.38948 4.57590 4.84765 5.00906 5.04513 5.05373 5.12390 5.13858 5.22876 5.35769 5.38771 5.49030 5.49593 5.54798 5.60292 5.69441 5.81182 5.95246 6.04584 6.08752 6.17375 6.52898 6.61861 6.69527 6.87545 7.03437 7.19342 7.25588 7.65557 7.84784 7.95885 8.43170 8.88297 8.92515 9.61705 10.63807 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.003147 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.669824 B = 8895.362894 C =10607.248980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.236 3.764 3 H 0.110 0.890 4 N -0.734 5.734 5 C 0.561 3.439 6 O -0.499 6.499 7 C -0.229 4.229 8 C -0.036 4.036 9 C -0.228 4.228 10 C -0.049 4.049 11 C -0.238 4.238 12 C 0.192 3.808 13 O -0.124 6.124 14 C -0.403 4.403 15 H 0.094 0.906 16 C 0.046 3.954 17 N -0.834 5.834 18 Si 0.940 3.060 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.266 1.266 22 C 0.188 3.812 23 N -0.295 5.295 24 N -0.075 5.075 25 N -0.097 5.097 26 N -0.272 5.272 27 C 0.042 3.958 28 C -0.153 4.153 29 C -0.161 4.161 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.403 0.597 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.271 0.729 39 H 0.165 0.835 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.597 -4.247 12.477 13.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.127 3.873 3 H 0.128 0.872 4 N -0.392 5.392 5 C 0.352 3.648 6 O -0.373 6.373 7 C -0.234 4.234 8 C -0.055 4.055 9 C -0.248 4.248 10 C -0.067 4.067 11 C -0.257 4.257 12 C 0.132 3.868 13 O -0.023 6.023 14 C -0.479 4.479 15 H 0.111 0.889 16 C -0.162 4.162 17 N -0.465 5.465 18 Si 0.764 3.236 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.090 4.090 23 N -0.145 5.145 24 N -0.068 5.068 25 N -0.083 5.083 26 N -0.072 5.072 27 C -0.061 4.061 28 C -0.190 4.190 29 C -0.199 4.199 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.239 0.761 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.081 0.919 39 H 0.183 0.817 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.485 -4.091 13.420 14.038 hybrid contribution 0.263 0.631 -1.227 1.405 sum 0.748 -3.460 12.193 12.697 Atomic orbital electron populations 1.22198 0.92352 1.03567 1.03623 1.19057 0.95062 0.95469 0.77689 0.87240 1.45918 1.70737 1.14299 1.08277 1.18256 0.77719 0.86678 0.82183 1.90948 1.47829 1.14542 1.83934 1.18706 1.18053 0.94466 0.92135 1.20815 0.94805 0.92211 0.97652 1.20490 1.11020 0.99610 0.93633 1.20926 0.95220 0.93648 0.96940 1.21163 1.09715 0.95427 0.99393 1.19237 0.90108 0.85806 0.91652 1.84157 1.66316 1.15544 1.36241 1.21498 1.46245 0.91304 0.88835 0.88862 1.25360 0.96203 0.95485 0.99145 1.70117 1.38756 1.08370 1.29297 0.85737 0.79092 0.78790 0.79975 1.19718 1.20137 1.19055 1.26243 0.99040 0.90366 0.93367 1.74973 1.17978 1.11269 1.10245 1.78617 1.11541 1.15195 1.01462 1.78807 1.19155 0.92127 1.18175 1.47832 1.38831 1.08821 1.11756 1.22526 1.10755 0.74965 0.97837 1.23466 0.94701 1.04214 0.96656 1.23562 0.96005 1.02930 0.97417 0.91246 0.91775 0.89522 0.76113 0.86875 0.87135 0.87100 0.85011 0.91900 0.81744 0.86556 0.86129 0.85952 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.47 37.16 0.35 -1.62 16 2 C 0.24 3.23 2.96 -69.08 -0.20 3.03 16 3 H 0.11 1.51 6.41 -51.93 -0.33 1.18 16 4 N -0.73 -11.63 5.02 -55.98 -0.28 -11.92 16 5 C 0.56 11.56 7.73 -12.47 -0.10 11.46 16 6 O -0.50 -12.42 14.83 -16.57 -0.25 -12.67 16 7 C -0.23 -4.81 5.89 -104.81 -0.62 -5.42 16 8 C -0.04 -0.62 9.53 -39.20 -0.37 -0.99 16 9 C -0.23 -3.74 10.02 -39.61 -0.40 -4.13 16 10 C -0.05 -0.84 10.03 -39.53 -0.40 -1.24 16 11 C -0.24 -4.97 9.16 -39.44 -0.36 -5.33 16 12 C 0.19 4.60 6.66 -38.60 -0.26 4.34 16 13 O -0.12 -3.53 7.84 -21.06 -0.17 -3.69 16 14 C -0.40 -11.04 9.49 30.90 0.29 -10.74 16 15 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 16 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 17 N -0.83 -24.12 13.67 55.48 0.76 -23.37 16 18 Si 0.94 19.89 29.55 -169.99 -5.02 14.86 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 C 0.19 2.51 6.91 -155.43 -1.07 1.44 16 23 N -0.30 -4.42 12.09 32.70 0.40 -4.02 16 24 N -0.07 -1.15 13.43 60.35 0.81 -0.34 16 25 N -0.10 -1.33 12.69 60.35 0.77 -0.56 16 26 N -0.27 -3.25 3.67 -51.81 -0.19 -3.44 16 27 C 0.04 0.35 6.58 -67.93 -0.45 -0.09 16 28 C -0.15 -0.96 10.16 -26.69 -0.27 -1.23 16 29 C -0.16 -0.96 10.46 -26.69 -0.28 -1.24 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.40 5.80 6.41 -40.82 -0.26 5.54 16 34 H 0.11 1.59 6.40 -52.48 -0.34 1.25 16 35 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.17 1.22 7.23 -51.93 -0.38 0.84 16 40 H 0.12 0.83 7.85 -51.93 -0.41 0.43 16 41 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -34.45 373.08 -6.58 -41.03 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.80 Total: 9.14 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -4.23 Total: -10.65 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 2.26 Total: -43.64 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.41 Total: -16.36 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.45 -6.58 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190284939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.788 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds