Wall clock time and date at job start Wed Apr 1 2020 01:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47237 * 2 1 4 4 C 1.50708 * 109.47363 * 239.99985 * 2 1 3 5 5 H 1.07997 * 119.99886 * 245.66337 * 4 2 1 6 6 C 1.37883 * 119.99799 * 65.65458 * 4 2 1 7 7 N 1.31507 * 119.99989 * 197.82599 * 6 4 2 8 8 Si 1.86797 * 119.99828 * 18.10952 * 6 4 2 9 9 H 1.48498 * 109.47272 * 179.72214 * 8 6 4 10 10 H 1.48507 * 109.47231 * 299.71777 * 8 6 4 11 11 H 1.48500 * 109.47371 * 59.71839 * 8 6 4 12 12 N 1.46500 * 109.47033 * 120.00165 * 2 1 3 13 13 C 1.46498 * 119.99884 * 59.99947 * 12 2 1 14 14 C 1.34780 * 119.99656 * 239.99978 * 12 2 1 15 15 O 1.21349 * 120.00291 * 5.67515 * 14 12 2 16 16 C 1.49351 * 119.99542 * 185.67850 * 14 12 2 17 17 O 1.21379 * 120.00176 * 5.77937 * 16 14 12 18 18 N 1.34774 * 119.99867 * 185.78392 * 16 14 12 19 19 C 1.39954 * 120.00064 * 179.97438 * 18 16 14 20 20 C 1.40021 * 126.72665 * 0.02562 * 19 18 16 21 21 N 1.30924 * 108.23156 * 179.97438 * 20 19 18 22 22 N 1.28697 * 109.74002 * 359.97438 * 21 20 19 23 23 C 1.40148 * 125.66192 * 179.97438 * 22 21 20 24 24 C 1.38855 * 120.06841 * 179.74772 * 23 22 21 25 25 C 1.38115 * 119.93020 * 179.74254 * 24 23 22 26 26 C 1.38280 * 120.06485 * 0.51769 * 25 24 23 27 27 C 1.38277 * 120.14035 * 359.75722 * 26 25 24 28 28 C 1.38112 * 120.07062 * 359.97438 * 27 26 25 29 29 N 1.31938 * 126.72850 * 179.68238 * 19 18 16 30 30 H 1.09006 * 109.46987 * 54.27116 * 1 2 3 31 31 H 1.08997 * 109.47143 * 174.26981 * 1 2 3 32 32 H 1.08999 * 109.47429 * 294.27662 * 1 2 3 33 33 H 0.97005 * 120.00145 * 355.24685 * 7 6 4 34 34 H 1.09003 * 109.47151 * 95.61862 * 13 12 2 35 35 H 1.09004 * 109.46953 * 215.61509 * 13 12 2 36 36 H 1.08994 * 109.47275 * 335.61076 * 13 12 2 37 37 H 0.97004 * 119.99754 * 359.97438 * 18 16 14 38 38 H 1.07996 * 125.88553 * 359.96978 * 20 19 18 39 39 H 1.07999 * 120.03279 * 359.97438 * 24 23 22 40 40 H 1.08002 * 119.96631 * 180.27390 * 25 24 23 41 41 H 1.08005 * 119.92684 * 179.74594 * 26 25 24 42 42 H 1.08005 * 119.96740 * 180.02562 * 27 26 25 43 43 H 1.07997 * 120.03653 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5758 -1.6387 -1.1340 6 6 1.7981 -0.1753 -2.4795 7 7 1.9106 -0.9306 -3.5501 8 14 1.3287 1.6245 -2.6512 9 1 1.1393 1.9519 -4.0873 10 1 0.0644 1.8789 -1.9148 11 1 2.4089 2.4739 -2.0882 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0833 15 8 3.0018 1.1519 1.9462 16 6 3.3951 -0.7714 3.2352 17 8 3.2743 -1.9765 3.3154 18 7 4.0724 -0.0973 4.1855 19 6 4.6361 -0.7867 5.2652 20 6 4.5834 -2.1666 5.4970 21 7 5.2282 -2.4203 6.6078 22 7 5.6872 -1.3250 7.1038 23 6 6.4283 -1.2117 8.2879 24 6 6.8722 0.0329 8.7145 25 6 7.5978 0.1419 9.8846 26 6 7.8913 -0.9881 10.6256 27 6 7.4555 -2.2297 10.2005 28 6 6.7249 -2.3446 9.0341 29 7 5.3266 -0.2646 6.2609 30 1 -0.3633 0.6001 -0.8343 31 1 -0.3633 -1.0225 -0.1026 32 1 -0.3634 0.4225 0.9368 33 1 2.2250 -1.8446 -3.4680 34 1 2.4644 -2.7355 1.0597 35 1 1.5260 -2.2613 2.4960 36 1 0.7393 -2.3264 0.9007 37 1 4.1693 0.8657 4.1212 38 1 4.0950 -2.8960 4.8679 39 1 6.6472 0.9152 8.1337 40 1 7.9396 1.1102 10.2192 41 1 8.4624 -0.9008 11.5381 42 1 7.6861 -3.1104 10.7816 43 1 6.3844 -3.3145 8.7028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276006715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:01 Heat of formation + Delta-G solvation = 99.441892 kcal Electronic energy + Delta-G solvation = -28559.012977 eV Core-core repulsion = 24415.560934 eV Total energy + Delta-G solvation = -4143.452042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.90440 -40.76729 -39.52530 -38.48023 -36.31421 -35.32607 -33.41732 -32.85433 -32.21066 -31.27946 -30.38337 -29.38192 -26.61830 -25.63503 -24.77660 -24.29333 -23.31388 -22.07334 -21.64595 -20.61610 -19.30139 -18.53974 -17.73086 -17.52060 -17.17281 -16.68678 -16.62482 -16.13261 -15.82716 -15.56704 -15.21406 -14.86912 -14.41485 -14.25292 -14.01503 -13.91845 -13.40169 -13.28444 -12.90151 -12.70291 -12.33777 -12.25574 -11.94747 -11.91188 -11.82567 -11.81700 -11.68191 -11.40241 -11.12022 -11.02899 -10.59507 -10.49777 -10.02930 -9.85676 -9.70278 -9.49208 -9.27653 -9.16262 -8.44816 -8.37181 -8.02945 -6.59840 -4.24685 0.27303 0.85948 1.20866 1.39912 1.75864 2.33945 2.37323 3.29774 3.31438 3.38287 3.41544 3.51932 3.61065 3.84831 4.36307 4.38036 4.42199 4.51404 4.62686 4.65940 4.87105 5.06676 5.07643 5.12656 5.30687 5.49740 5.52325 5.74801 5.83029 5.86611 5.99971 6.02048 6.13740 6.18516 6.21782 6.29610 6.37109 6.44240 6.60018 6.76218 6.78289 6.94083 7.13487 7.46162 7.63627 7.72789 7.98279 8.21968 8.28359 8.75824 9.44124 10.78922 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030900 B = 0.002001 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.930974 B =13989.955361 C =14425.627351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.232 3.768 3 H 0.059 0.941 4 C -0.616 4.616 5 H 0.064 0.936 6 C 0.039 3.961 7 N -0.895 5.895 8 Si 1.039 2.961 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.278 1.278 12 N -0.542 5.542 13 C 0.084 3.916 14 C 0.502 3.498 15 O -0.531 6.531 16 C 0.522 3.478 17 O -0.489 6.489 18 N -0.607 5.607 19 C 0.283 3.717 20 C -0.022 4.022 21 N -0.231 5.231 22 N -0.176 5.176 23 C 0.171 3.829 24 C -0.115 4.115 25 C -0.098 4.098 26 C -0.124 4.124 27 C -0.098 4.098 28 C -0.117 4.117 29 N -0.301 5.301 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.270 0.730 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.433 0.567 38 H 0.222 0.778 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.609 -0.930 26.345 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.131 3.869 3 H 0.076 0.924 4 C -0.654 4.654 5 H 0.082 0.918 6 C -0.168 4.168 7 N -0.528 5.528 8 Si 0.867 3.133 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.204 1.204 12 N -0.272 5.272 13 C -0.059 4.059 14 C 0.282 3.718 15 O -0.410 6.410 16 C 0.304 3.696 17 O -0.360 6.360 18 N -0.259 5.259 19 C 0.022 3.978 20 C -0.210 4.210 21 N -0.067 5.067 22 N -0.067 5.067 23 C 0.080 3.920 24 C -0.136 4.136 25 C -0.117 4.117 26 C -0.143 4.143 27 C -0.117 4.117 28 C -0.138 4.138 29 N -0.139 5.139 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.272 0.728 38 H 0.238 0.762 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.804 0.107 26.164 27.303 hybrid contribution 0.109 -0.936 0.170 0.958 sum 7.913 -0.829 26.334 27.510 Atomic orbital electron populations 1.22545 0.97882 1.01730 1.00038 1.19468 0.91072 0.94730 0.81585 0.92371 1.22125 1.41881 1.10754 0.90631 0.91790 1.25691 0.94310 1.05107 0.91721 1.70869 1.40880 1.09687 1.31335 0.84139 0.77482 0.75283 0.76439 1.20793 1.19782 1.20374 1.48004 1.45101 1.12895 1.21238 1.21962 1.01489 0.80978 1.01443 1.19281 0.82076 0.87114 0.83372 1.90744 1.61028 1.14226 1.75002 1.20985 0.78177 0.87599 0.82827 1.90640 1.55893 1.14017 1.75407 1.42405 1.51519 1.12767 1.19203 1.20076 0.95725 0.92162 0.89789 1.25232 1.04781 0.95068 0.95945 1.73439 1.09891 1.13188 1.10195 1.47621 1.40682 1.00167 1.18217 1.17349 0.95711 0.95774 0.83206 1.20952 0.98987 0.95986 0.97645 1.21062 0.97498 0.99367 0.93785 1.21304 1.00214 0.92501 1.00298 1.21044 0.97042 0.98236 0.95359 1.20946 0.99977 0.97706 0.95187 1.78182 1.20695 1.11198 1.03855 0.91266 0.92751 0.95138 0.92014 0.92197 0.90686 0.90783 0.72751 0.76187 0.84181 0.84767 0.85238 0.84745 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.74 37.16 0.32 -3.02 16 2 C 0.23 5.33 2.21 -69.08 -0.15 5.18 16 3 H 0.06 1.42 5.56 -51.93 -0.29 1.14 16 4 C -0.62 -16.31 8.67 -34.43 -0.30 -16.61 16 5 H 0.06 1.82 7.80 -52.49 -0.41 1.42 16 6 C 0.04 1.06 5.34 -17.82 -0.10 0.97 16 7 N -0.89 -26.20 13.70 55.43 0.76 -25.44 16 8 Si 1.04 24.15 26.45 -169.99 -4.50 19.65 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.27 -5.72 5.51 56.52 0.31 -5.40 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 N -0.54 -10.89 2.75 -175.81 -0.48 -11.37 16 13 C 0.08 1.45 8.36 59.85 0.50 1.95 16 14 C 0.50 9.45 7.72 -11.63 -0.09 9.36 16 15 O -0.53 -10.99 15.83 5.50 0.09 -10.90 16 16 C 0.52 8.15 7.67 -11.63 -0.09 8.06 16 17 O -0.49 -7.64 10.60 5.47 0.06 -7.58 16 18 N -0.61 -8.32 5.43 -11.54 -0.06 -8.38 16 19 C 0.28 3.97 8.18 -154.14 -1.26 2.71 16 20 C -0.02 -0.30 10.85 -17.27 -0.19 -0.48 16 21 N -0.23 -3.15 11.24 30.67 0.34 -2.81 16 22 N -0.18 -2.35 4.44 32.48 0.14 -2.21 16 23 C 0.17 1.89 6.74 -83.60 -0.56 1.33 16 24 C -0.11 -1.06 9.65 -39.40 -0.38 -1.44 16 25 C -0.10 -0.66 10.04 -39.61 -0.40 -1.05 16 26 C -0.12 -0.73 10.04 -39.55 -0.40 -1.12 16 27 C -0.10 -0.64 10.04 -39.61 -0.40 -1.03 16 28 C -0.12 -1.05 9.61 -39.40 -0.38 -1.43 16 29 N -0.30 -4.20 11.97 31.43 0.38 -3.82 16 30 H 0.07 1.45 4.85 -51.93 -0.25 1.20 16 31 H 0.05 1.07 6.89 -51.93 -0.36 0.71 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.27 7.86 8.73 -40.82 -0.36 7.51 16 34 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 35 H 0.07 1.13 6.00 -51.93 -0.31 0.82 16 36 H 0.07 1.25 6.55 -51.93 -0.34 0.91 16 37 H 0.43 5.39 8.31 -40.82 -0.34 5.05 16 38 H 0.22 2.87 5.98 -52.49 -0.31 2.55 16 39 H 0.14 1.30 7.68 -52.49 -0.40 0.90 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 42 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.14 1.22 7.68 -52.49 -0.40 0.82 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -31.13 362.42 -6.45 -37.58 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.77 Total: 6.49 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -3.86 Total: 3.34 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 1.08 Total: -54.03 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.15 Total: -18.48 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -4.50 Total: 19.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.13 -6.45 -37.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276006715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.019 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds