Wall clock time and date at job start Wed Apr 1 2020 01:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47237 * 2 1 4 4 C 1.50708 * 109.47363 * 239.99985 * 2 1 3 5 5 H 1.07997 * 119.99886 * 245.66337 * 4 2 1 6 6 C 1.37883 * 119.99799 * 65.65458 * 4 2 1 7 7 N 1.31507 * 119.99989 * 197.82599 * 6 4 2 8 8 Si 1.86797 * 119.99828 * 18.10952 * 6 4 2 9 9 H 1.48498 * 109.47272 * 179.72214 * 8 6 4 10 10 H 1.48507 * 109.47231 * 299.71777 * 8 6 4 11 11 H 1.48500 * 109.47371 * 59.71839 * 8 6 4 12 12 N 1.46500 * 109.47033 * 120.00165 * 2 1 3 13 13 C 1.46498 * 119.99884 * 59.99947 * 12 2 1 14 14 C 1.34780 * 119.99656 * 239.99978 * 12 2 1 15 15 O 1.21349 * 120.00291 * 5.67515 * 14 12 2 16 16 C 1.49351 * 119.99542 * 185.67850 * 14 12 2 17 17 O 1.21379 * 120.00176 * 5.77937 * 16 14 12 18 18 N 1.34774 * 119.99867 * 185.78392 * 16 14 12 19 19 C 1.39954 * 120.00064 * 179.97438 * 18 16 14 20 20 C 1.40021 * 126.72665 * 0.02562 * 19 18 16 21 21 N 1.30924 * 108.23156 * 179.97438 * 20 19 18 22 22 N 1.28697 * 109.74002 * 359.97438 * 21 20 19 23 23 C 1.40148 * 125.66192 * 179.97438 * 22 21 20 24 24 C 1.38855 * 120.06841 * 179.74772 * 23 22 21 25 25 C 1.38115 * 119.93020 * 179.74254 * 24 23 22 26 26 C 1.38280 * 120.06485 * 0.51769 * 25 24 23 27 27 C 1.38277 * 120.14035 * 359.75722 * 26 25 24 28 28 C 1.38112 * 120.07062 * 359.97438 * 27 26 25 29 29 N 1.31938 * 126.72850 * 179.68238 * 19 18 16 30 30 H 1.09006 * 109.46987 * 54.27116 * 1 2 3 31 31 H 1.08997 * 109.47143 * 174.26981 * 1 2 3 32 32 H 1.08999 * 109.47429 * 294.27662 * 1 2 3 33 33 H 0.97005 * 120.00145 * 355.24685 * 7 6 4 34 34 H 1.09003 * 109.47151 * 95.61862 * 13 12 2 35 35 H 1.09004 * 109.46953 * 215.61509 * 13 12 2 36 36 H 1.08994 * 109.47275 * 335.61076 * 13 12 2 37 37 H 0.97004 * 119.99754 * 359.97438 * 18 16 14 38 38 H 1.07996 * 125.88553 * 359.96978 * 20 19 18 39 39 H 1.07999 * 120.03279 * 359.97438 * 24 23 22 40 40 H 1.08002 * 119.96631 * 180.27390 * 25 24 23 41 41 H 1.08005 * 119.92684 * 179.74594 * 26 25 24 42 42 H 1.08005 * 119.96740 * 180.02562 * 27 26 25 43 43 H 1.07997 * 120.03653 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5758 -1.6387 -1.1340 6 6 1.7981 -0.1753 -2.4795 7 7 1.9106 -0.9306 -3.5501 8 14 1.3287 1.6245 -2.6512 9 1 1.1393 1.9519 -4.0873 10 1 0.0644 1.8789 -1.9148 11 1 2.4089 2.4739 -2.0882 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0833 15 8 3.0018 1.1519 1.9462 16 6 3.3951 -0.7714 3.2352 17 8 3.2743 -1.9765 3.3154 18 7 4.0724 -0.0973 4.1855 19 6 4.6361 -0.7867 5.2652 20 6 4.5834 -2.1666 5.4970 21 7 5.2282 -2.4203 6.6078 22 7 5.6872 -1.3250 7.1038 23 6 6.4283 -1.2117 8.2879 24 6 6.8722 0.0329 8.7145 25 6 7.5978 0.1419 9.8846 26 6 7.8913 -0.9881 10.6256 27 6 7.4555 -2.2297 10.2005 28 6 6.7249 -2.3446 9.0341 29 7 5.3266 -0.2646 6.2609 30 1 -0.3633 0.6001 -0.8343 31 1 -0.3633 -1.0225 -0.1026 32 1 -0.3634 0.4225 0.9368 33 1 2.2250 -1.8446 -3.4680 34 1 2.4644 -2.7355 1.0597 35 1 1.5260 -2.2613 2.4960 36 1 0.7393 -2.3264 0.9007 37 1 4.1693 0.8657 4.1212 38 1 4.0950 -2.8960 4.8679 39 1 6.6472 0.9152 8.1337 40 1 7.9396 1.1102 10.2192 41 1 8.4624 -0.9008 11.5381 42 1 7.6861 -3.1104 10.7816 43 1 6.3844 -3.3145 8.7028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276006715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:01 Heat of formation + Delta-G solvation = 79.175574 kcal Electronic energy + Delta-G solvation = -28559.891790 eV Core-core repulsion = 24415.560934 eV Total energy + Delta-G solvation = -4144.330856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.93544 -42.10913 -40.25353 -39.83683 -37.79882 -36.64529 -34.81950 -34.24162 -33.22449 -32.16247 -31.92921 -30.21166 -28.05678 -27.07318 -26.58487 -25.18910 -24.24178 -23.17751 -22.55897 -21.86195 -20.77965 -19.61986 -19.43996 -18.96019 -18.43744 -17.80543 -17.61865 -17.19986 -17.14437 -16.73722 -16.26074 -15.77009 -15.64599 -15.59160 -15.12152 -15.01960 -14.70110 -14.47859 -14.34526 -14.07538 -13.85057 -13.51278 -13.43084 -13.22179 -13.16306 -12.94317 -12.58432 -12.56748 -12.42698 -12.36855 -11.95210 -11.83196 -11.63242 -11.41915 -11.16008 -10.73921 -10.65108 -10.47471 -10.06985 -9.74738 -9.21116 -8.75339 -6.42216 -0.59366 0.01948 0.28900 0.34221 0.82464 1.20443 1.22771 1.45576 1.55494 1.71981 1.98970 2.25588 2.44509 2.71809 2.87278 2.98528 3.05375 3.52776 3.84279 3.88235 4.15204 4.21893 4.28365 4.33158 4.38047 4.45085 4.48305 4.54267 4.61345 4.72830 4.74678 4.95128 4.99678 5.03206 5.07745 5.22900 5.24986 5.31022 5.46704 5.47787 5.51909 5.66824 5.74002 5.94143 6.00460 6.17491 6.39939 6.50860 6.69415 6.79019 7.34368 8.60460 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030900 B = 0.002001 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.930974 B =13989.955361 C =14425.627351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.231 3.769 3 H 0.047 0.953 4 C -0.611 4.611 5 H 0.031 0.969 6 C -0.008 4.008 7 N -0.927 5.927 8 Si 1.072 2.928 9 H -0.286 1.286 10 H -0.232 1.232 11 H -0.274 1.274 12 N -0.555 5.555 13 C 0.088 3.912 14 C 0.501 3.499 15 O -0.551 6.551 16 C 0.534 3.466 17 O -0.489 6.489 18 N -0.594 5.594 19 C 0.271 3.729 20 C -0.032 4.032 21 N -0.235 5.235 22 N -0.170 5.170 23 C 0.127 3.873 24 C -0.125 4.125 25 C -0.097 4.097 26 C -0.111 4.111 27 C -0.095 4.095 28 C -0.125 4.125 29 N -0.307 5.307 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.255 0.745 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.439 0.561 38 H 0.226 0.774 39 H 0.132 0.868 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.025 -0.091 29.822 30.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.129 3.871 3 H 0.065 0.935 4 C -0.649 4.649 5 H 0.049 0.951 6 C -0.209 4.209 7 N -0.562 5.562 8 Si 0.893 3.107 9 H -0.212 1.212 10 H -0.157 1.157 11 H -0.200 1.200 12 N -0.285 5.285 13 C -0.054 4.054 14 C 0.282 3.718 15 O -0.430 6.430 16 C 0.315 3.685 17 O -0.360 6.360 18 N -0.246 5.246 19 C 0.012 3.988 20 C -0.220 4.220 21 N -0.073 5.073 22 N -0.062 5.062 23 C 0.037 3.963 24 C -0.146 4.146 25 C -0.115 4.115 26 C -0.130 4.130 27 C -0.114 4.114 28 C -0.146 4.146 29 N -0.146 5.146 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.279 0.721 38 H 0.242 0.758 39 H 0.150 0.850 40 H 0.179 0.821 41 H 0.182 0.818 42 H 0.181 0.819 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.221 0.930 29.689 30.821 hybrid contribution 0.192 -1.253 -0.653 1.426 sum 8.413 -0.323 29.036 30.232 Atomic orbital electron populations 1.22397 0.95502 1.02219 1.01306 1.19255 0.92794 0.93711 0.81308 0.93513 1.22263 1.40683 1.09461 0.92503 0.95089 1.26950 0.94142 1.08145 0.91630 1.70989 1.43469 1.09323 1.32412 0.83749 0.79204 0.70984 0.76747 1.21153 1.15654 1.20006 1.47982 1.45756 1.13860 1.20871 1.22037 1.01021 0.79334 1.02976 1.19671 0.81280 0.86976 0.83847 1.90725 1.61376 1.15226 1.75717 1.20180 0.78607 0.87238 0.82450 1.90645 1.56225 1.13786 1.75340 1.42114 1.50860 1.12901 1.18706 1.20033 0.96526 0.92312 0.89975 1.25274 1.05352 0.95062 0.96276 1.73411 1.10094 1.13485 1.10272 1.47954 1.40076 0.99692 1.18483 1.17855 0.97741 0.97339 0.83401 1.21083 0.99713 0.95106 0.98742 1.21432 0.96331 1.01149 0.92612 1.21772 0.98755 0.91654 1.00791 1.21437 0.95700 0.99865 0.94349 1.21109 1.00543 0.96959 0.96018 1.78121 1.20610 1.11910 1.03943 0.91583 0.92424 0.92484 0.93548 0.93349 0.88229 0.90619 0.72060 0.75823 0.84977 0.82102 0.81757 0.81861 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.08 8.74 71.98 0.63 -5.45 16 2 C 0.23 10.48 2.21 44.25 0.10 10.58 16 3 H 0.05 2.25 5.56 -2.39 -0.01 2.24 16 4 C -0.61 -32.94 8.67 25.60 0.22 -32.71 16 5 H 0.03 1.83 7.80 -2.91 -0.02 1.81 16 6 C -0.01 -0.47 5.34 84.66 0.45 -0.01 16 7 N -0.93 -55.79 13.70 21.45 0.29 -55.49 16 8 Si 1.07 48.18 26.45 68.60 1.81 49.99 16 9 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 10 H -0.23 -8.97 5.51 99.48 0.55 -8.42 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.55 -22.00 2.75 -828.50 -2.28 -24.28 16 13 C 0.09 2.99 8.36 127.77 1.07 4.06 16 14 C 0.50 18.61 7.72 87.24 0.67 19.28 16 15 O -0.55 -22.50 15.83 -3.25 -0.05 -22.55 16 16 C 0.53 16.36 7.67 87.24 0.67 17.03 16 17 O -0.49 -14.94 10.60 -3.34 -0.04 -14.97 16 18 N -0.59 -16.02 5.43 -308.79 -1.68 -17.69 16 19 C 0.27 7.56 8.18 133.09 1.09 8.65 16 20 C -0.03 -0.88 10.85 85.26 0.93 0.04 16 21 N -0.24 -6.43 11.24 -56.88 -0.64 -7.07 16 22 N -0.17 -4.54 4.44 -51.14 -0.23 -4.76 16 23 C 0.13 2.73 6.74 38.11 0.26 2.99 16 24 C -0.13 -2.19 9.65 22.39 0.22 -1.98 16 25 C -0.10 -1.02 10.04 22.25 0.22 -0.79 16 26 C -0.11 -0.87 10.04 22.29 0.22 -0.64 16 27 C -0.10 -0.95 10.04 22.25 0.22 -0.72 16 28 C -0.13 -2.10 9.61 22.39 0.22 -1.89 16 29 N -0.31 -8.56 11.97 -54.46 -0.65 -9.21 16 30 H 0.07 2.59 4.85 -2.38 -0.01 2.58 16 31 H 0.06 2.18 6.89 -2.39 -0.02 2.16 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.26 15.57 8.73 -92.70 -0.81 14.76 16 34 H 0.05 1.74 8.09 -2.39 -0.02 1.72 16 35 H 0.10 2.87 6.00 -2.38 -0.01 2.86 16 36 H 0.08 2.51 6.55 -2.39 -0.02 2.50 16 37 H 0.44 10.74 8.31 -92.70 -0.77 9.97 16 38 H 0.23 5.79 5.98 -2.91 -0.02 5.78 16 39 H 0.13 2.43 7.68 -2.91 -0.02 2.41 16 40 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 41 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 42 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 43 H 0.14 2.31 7.68 -2.91 -0.02 2.29 16 Total: -1.00 -69.03 362.42 3.85 -65.18 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.12 Total: 22.44 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 7.18 Total: 18.43 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -5.18 Total: -118.52 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.09 Total: -37.52 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.81 Total: 49.99 kcal Total: -69.03 3.85 -65.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276006715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.354 kcal (2) G-P(sol) polarization free energy of solvation -69.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds