Wall clock time and date at job start Wed Apr 1 2020 01:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35668 * 117.00241 * 2 1 4 4 N 1.32281 * 119.68815 * 359.97438 * 3 2 1 5 5 C 1.31929 * 121.65350 * 180.02562 * 4 3 2 6 6 C 1.38096 * 120.83074 * 359.97438 * 5 4 3 7 7 C 1.38781 * 119.28786 * 359.73293 * 6 5 4 8 8 C 1.38424 * 118.48451 * 0.53241 * 7 6 5 9 9 C 1.50700 * 120.44328 * 179.73875 * 8 7 6 10 10 C 1.53000 * 109.47180 * 264.72433 * 9 8 7 11 11 N 1.46501 * 109.47266 * 179.97438 * 10 9 8 12 12 S 1.65598 * 120.00034 * 164.99831 * 11 10 9 13 13 O 1.42100 * 106.40183 * 311.46236 * 12 11 10 14 14 O 1.42101 * 106.40217 * 178.54484 * 12 11 10 15 15 N 1.65597 * 107.21541 * 65.00515 * 12 11 10 16 16 C 1.46503 * 119.99956 * 269.99520 * 15 12 11 17 17 C 1.46497 * 120.00227 * 89.99985 * 15 12 11 18 18 H 1.09003 * 109.46733 * 0.02562 * 17 15 12 19 19 C 1.53000 * 109.47145 * 119.99787 * 17 15 12 20 20 C 1.50694 * 109.47115 * 239.99861 * 17 15 12 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 17 15 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 17 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 H 1.08996 * 109.47030 * 59.99877 * 1 2 3 29 29 H 1.08996 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46788 * 300.00341 * 1 2 3 31 31 H 1.07994 * 119.58429 * 179.97438 * 5 4 3 32 32 H 1.08006 * 120.35192 * 179.97438 * 6 5 4 33 33 H 1.07997 * 120.75519 * 180.29622 * 7 6 5 34 34 H 1.08996 * 109.47220 * 144.71740 * 9 8 7 35 35 H 1.09005 * 109.47160 * 24.72501 * 9 8 7 36 36 H 1.09001 * 109.46843 * 59.99975 * 10 9 8 37 37 H 1.08992 * 109.46988 * 299.99864 * 10 9 8 38 38 H 0.96998 * 119.99681 * 345.00413 * 11 10 9 39 39 H 1.08994 * 109.47665 * 270.00896 * 16 15 12 40 40 H 1.09008 * 109.46786 * 30.00504 * 16 15 12 41 41 H 1.08997 * 109.47360 * 149.99945 * 16 15 12 42 42 H 1.09000 * 109.47156 * 59.99824 * 19 17 15 43 43 H 1.08997 * 109.47359 * 180.02562 * 19 17 15 44 44 H 1.09007 * 109.47356 * 300.00099 * 19 17 15 45 45 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 7 1.3185 2.3143 -0.0005 5 6 1.8769 3.5096 -0.0010 6 6 3.2508 3.6490 -0.0005 7 6 4.0484 2.5133 0.0062 8 6 3.4322 1.2738 0.0009 9 6 4.2557 0.0117 0.0018 10 6 4.4297 -0.4849 -1.4348 11 7 5.2308 -1.7115 -1.4339 12 16 5.2732 -2.6737 -2.7810 13 8 3.9231 -2.8618 -3.1824 14 8 6.1510 -3.7494 -2.4783 15 7 6.0016 -1.8002 -3.9845 16 6 5.1929 -0.9633 -4.8745 17 6 7.4547 -1.8644 -4.1595 18 1 7.8815 -2.5326 -3.4116 19 6 7.7771 -2.3933 -5.5585 20 6 8.0417 -0.4861 -3.9960 21 1 7.3969 0.3538 -3.7835 22 6 9.4020 -0.2971 -4.1189 23 7 10.1872 -1.3197 -4.3782 24 14 10.1294 1.4115 -3.9169 25 1 11.6024 1.3465 -4.0941 26 1 9.5474 2.3210 -4.9363 27 1 9.8170 1.9252 -2.5591 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.2516 4.3901 -0.0019 32 1 3.6997 4.6314 -0.0014 33 1 5.1253 2.5948 0.0115 34 1 3.7491 -0.7522 0.5916 35 1 5.2342 0.2166 0.4365 36 1 4.9364 0.2791 -2.0244 37 1 3.4514 -0.6898 -1.8693 38 1 5.7363 -1.9600 -0.6442 39 1 4.8798 -1.5488 -5.7388 40 1 4.3129 -0.6077 -4.3384 41 1 5.7842 -0.1106 -5.2081 42 1 7.3501 -1.7255 -6.3068 43 1 8.8582 -2.4415 -5.6886 44 1 7.3525 -3.3903 -5.6768 45 1 11.1441 -1.1867 -4.4649 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289501920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:35 Heat of formation + Delta-G solvation = -79.456600 kcal Electronic energy + Delta-G solvation = -28870.416334 eV Core-core repulsion = 24822.357872 eV Total energy + Delta-G solvation = -4048.058463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88283 -38.00671 -36.69338 -36.19037 -35.95094 -35.20520 -33.14268 -32.60092 -31.38331 -29.07413 -28.36557 -27.34897 -25.48897 -25.18224 -23.88662 -23.13598 -21.69154 -20.75179 -18.83064 -18.47724 -17.29250 -17.18266 -16.73743 -16.41821 -16.22202 -15.79230 -15.60000 -15.01567 -14.64506 -14.48668 -14.28573 -14.03154 -13.61408 -13.41049 -13.27091 -13.14689 -12.72930 -12.49010 -12.18330 -11.98080 -11.91266 -11.73639 -11.55781 -11.47016 -11.36327 -11.33821 -11.21153 -11.15753 -10.95800 -10.88417 -10.43811 -10.21560 -10.07003 -9.91278 -9.81487 -9.35390 -9.08637 -8.56360 -8.49004 -7.95396 -6.10160 -4.18714 0.91376 1.10773 1.31740 2.95501 3.23184 3.29595 3.29858 3.50374 3.60299 4.09806 4.19460 4.33815 4.63729 4.73149 4.79565 4.99428 5.03192 5.10506 5.15004 5.18155 5.20169 5.24321 5.36638 5.47621 5.59568 5.68789 5.73926 5.88803 5.96546 6.16125 6.19123 6.22203 6.28028 6.37746 6.66962 6.88829 6.89080 7.07426 7.12516 7.27821 7.54847 7.62868 7.65055 7.78604 8.05196 8.25862 8.83820 9.47235 10.94865 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.003873 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.133927 B = 7228.588961 C = 8981.912362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.301 6.301 3 C 0.323 3.677 4 N -0.541 5.541 5 C 0.132 3.868 6 C -0.208 4.208 7 C -0.037 4.037 8 C -0.148 4.148 9 C -0.074 4.074 10 C 0.130 3.870 11 N -1.127 6.127 12 S 2.783 3.217 13 O -0.998 6.998 14 O -0.982 6.982 15 N -0.990 5.990 16 C 0.106 3.894 17 C 0.268 3.732 18 H 0.059 0.941 19 C -0.145 4.145 20 C -0.525 4.525 21 H 0.062 0.938 22 C 0.064 3.936 23 N -0.887 5.887 24 Si 0.897 3.103 25 H -0.287 1.287 26 H -0.277 1.277 27 H -0.278 1.278 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.157 0.843 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.412 0.588 39 H 0.043 0.957 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.092 0.908 44 H 0.012 0.988 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.583 8.288 9.089 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.207 6.207 3 C 0.144 3.856 4 N -0.264 5.264 5 C -0.023 4.023 6 C -0.229 4.229 7 C -0.062 4.062 8 C -0.151 4.151 9 C -0.114 4.114 10 C 0.003 3.997 11 N -0.886 5.886 12 S 2.792 3.208 13 O -0.981 6.981 14 O -0.966 6.966 15 N -0.833 5.833 16 C -0.041 4.041 17 C 0.165 3.835 18 H 0.077 0.923 19 C -0.205 4.205 20 C -0.565 4.565 21 H 0.080 0.920 22 C -0.138 4.138 23 N -0.525 5.525 24 Si 0.725 3.275 25 H -0.213 1.213 26 H -0.203 1.203 27 H -0.203 1.203 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.175 0.825 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.245 0.755 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.031 0.969 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.658 7.028 8.814 19.293 hybrid contribution 1.490 1.627 0.411 2.244 sum -14.167 8.655 9.225 18.993 Atomic orbital electron populations 1.22864 0.77300 1.03083 1.02235 1.86294 1.22780 1.24214 1.87446 1.19703 0.88918 0.84819 0.92147 1.67325 1.40877 0.98833 1.19411 1.22376 0.92964 0.93575 0.93413 1.21992 0.94865 0.99859 1.06163 1.21468 1.01005 0.90678 0.93044 1.19809 0.91086 0.96691 1.07548 1.20577 0.99549 0.93878 0.97355 1.21108 0.95198 0.86339 0.97016 1.55993 1.61915 1.38287 1.32418 1.01763 0.72816 0.73423 0.72796 1.93539 1.36787 1.85477 1.82343 1.93591 1.66779 1.51845 1.84433 1.57704 1.18141 1.62348 1.45112 1.21197 0.93549 0.95714 0.93598 1.18714 0.72220 0.97231 0.95309 0.92346 1.22056 1.04147 0.96270 0.97980 1.21334 0.92124 0.93702 1.49325 0.92004 1.24927 0.97033 0.96921 0.94960 1.69874 1.04653 1.29849 1.48108 0.86594 0.78017 0.84367 0.78562 1.21271 1.20296 1.20321 0.92256 0.88534 0.92506 0.82537 0.84491 0.83782 0.89643 0.89842 0.91550 0.90735 0.75474 0.93865 0.93364 0.90229 0.94900 0.88934 0.96884 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.30 -3.78 9.63 -18.71 -0.18 -3.96 16 3 C 0.32 4.05 7.47 -17.12 -0.13 3.93 16 4 N -0.54 -6.35 9.22 -13.33 -0.12 -6.48 16 5 C 0.13 1.23 11.18 -17.56 -0.20 1.04 16 6 C -0.21 -1.81 10.11 -39.43 -0.40 -2.21 16 7 C -0.04 -0.36 9.83 -39.31 -0.39 -0.75 16 8 C -0.15 -1.72 5.17 -104.32 -0.54 -2.26 16 9 C -0.07 -0.86 5.23 -27.88 -0.15 -1.01 16 10 C 0.13 1.84 6.23 -4.04 -0.03 1.81 16 11 N -1.13 -17.89 6.05 -10.61 -0.06 -17.95 16 12 S 2.78 55.19 6.09 -107.50 -0.66 54.54 16 13 O -1.00 -20.89 16.68 -57.17 -0.95 -21.84 16 14 O -0.98 -22.56 16.70 -57.17 -0.95 -23.51 16 15 N -0.99 -20.58 3.12 -115.85 -0.36 -20.94 16 16 C 0.11 1.91 9.28 59.85 0.56 2.46 16 17 C 0.27 6.52 2.62 -69.09 -0.18 6.34 16 18 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 19 C -0.14 -3.46 8.97 37.16 0.33 -3.13 16 20 C -0.53 -13.25 7.99 -34.44 -0.28 -13.53 16 21 H 0.06 1.50 7.33 -52.49 -0.38 1.12 16 22 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 23 N -0.89 -24.16 11.32 55.43 0.63 -23.53 16 24 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 28 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.07 16 31 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.09 0.98 7.71 -51.93 -0.40 0.58 16 35 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.11 7.75 -51.93 -0.40 0.71 16 38 H 0.41 5.75 8.65 -34.47 -0.30 5.45 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.76 7.79 -51.92 -0.40 0.36 16 41 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 42 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 43 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 44 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -32.77 385.66 -8.99 -41.76 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.68 Total: 5.44 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.43 Total: -4.30 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: 0.08 Total: -68.90 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -2.09 Total: -49.31 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 55.19 SS G_CDS: -0.66 Total: 54.54 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.77 -8.99 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289501920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.699 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds