Wall clock time and date at job start Wed Apr 1 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35668 * 117.00241 * 2 1 4 4 N 1.32281 * 119.68815 * 359.97438 * 3 2 1 5 5 C 1.31929 * 121.65350 * 180.02562 * 4 3 2 6 6 C 1.38096 * 120.83074 * 359.97438 * 5 4 3 7 7 C 1.38781 * 119.28786 * 359.73293 * 6 5 4 8 8 C 1.38424 * 118.48451 * 0.53241 * 7 6 5 9 9 C 1.50700 * 120.44328 * 179.73875 * 8 7 6 10 10 C 1.53000 * 109.47180 * 264.72433 * 9 8 7 11 11 N 1.46501 * 109.47266 * 179.97438 * 10 9 8 12 12 S 1.65598 * 120.00034 * 164.99831 * 11 10 9 13 13 O 1.42100 * 106.40183 * 311.46236 * 12 11 10 14 14 O 1.42101 * 106.40217 * 178.54484 * 12 11 10 15 15 N 1.65597 * 107.21541 * 65.00515 * 12 11 10 16 16 C 1.46503 * 119.99956 * 269.99520 * 15 12 11 17 17 C 1.46497 * 120.00227 * 89.99985 * 15 12 11 18 18 H 1.09003 * 109.46733 * 0.02562 * 17 15 12 19 19 C 1.53000 * 109.47145 * 119.99787 * 17 15 12 20 20 C 1.50694 * 109.47115 * 239.99861 * 17 15 12 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 17 15 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 17 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 H 1.08996 * 109.47030 * 59.99877 * 1 2 3 29 29 H 1.08996 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46788 * 300.00341 * 1 2 3 31 31 H 1.07994 * 119.58429 * 179.97438 * 5 4 3 32 32 H 1.08006 * 120.35192 * 179.97438 * 6 5 4 33 33 H 1.07997 * 120.75519 * 180.29622 * 7 6 5 34 34 H 1.08996 * 109.47220 * 144.71740 * 9 8 7 35 35 H 1.09005 * 109.47160 * 24.72501 * 9 8 7 36 36 H 1.09001 * 109.46843 * 59.99975 * 10 9 8 37 37 H 1.08992 * 109.46988 * 299.99864 * 10 9 8 38 38 H 0.96998 * 119.99681 * 345.00413 * 11 10 9 39 39 H 1.08994 * 109.47665 * 270.00896 * 16 15 12 40 40 H 1.09008 * 109.46786 * 30.00504 * 16 15 12 41 41 H 1.08997 * 109.47360 * 149.99945 * 16 15 12 42 42 H 1.09000 * 109.47156 * 59.99824 * 19 17 15 43 43 H 1.08997 * 109.47359 * 180.02562 * 19 17 15 44 44 H 1.09007 * 109.47356 * 300.00099 * 19 17 15 45 45 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 7 1.3185 2.3143 -0.0005 5 6 1.8769 3.5096 -0.0010 6 6 3.2508 3.6490 -0.0005 7 6 4.0484 2.5133 0.0062 8 6 3.4322 1.2738 0.0009 9 6 4.2557 0.0117 0.0018 10 6 4.4297 -0.4849 -1.4348 11 7 5.2308 -1.7115 -1.4339 12 16 5.2732 -2.6737 -2.7810 13 8 3.9231 -2.8618 -3.1824 14 8 6.1510 -3.7494 -2.4783 15 7 6.0016 -1.8002 -3.9845 16 6 5.1929 -0.9633 -4.8745 17 6 7.4547 -1.8644 -4.1595 18 1 7.8815 -2.5326 -3.4116 19 6 7.7771 -2.3933 -5.5585 20 6 8.0417 -0.4861 -3.9960 21 1 7.3969 0.3538 -3.7835 22 6 9.4020 -0.2971 -4.1189 23 7 10.1872 -1.3197 -4.3782 24 14 10.1294 1.4115 -3.9169 25 1 11.6024 1.3465 -4.0941 26 1 9.5474 2.3210 -4.9363 27 1 9.8170 1.9252 -2.5591 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.2516 4.3901 -0.0019 32 1 3.6997 4.6314 -0.0014 33 1 5.1253 2.5948 0.0115 34 1 3.7491 -0.7522 0.5916 35 1 5.2342 0.2166 0.4365 36 1 4.9364 0.2791 -2.0244 37 1 3.4514 -0.6898 -1.8693 38 1 5.7363 -1.9600 -0.6442 39 1 4.8798 -1.5488 -5.7388 40 1 4.3129 -0.6077 -4.3384 41 1 5.7842 -0.1106 -5.2081 42 1 7.3501 -1.7255 -6.3068 43 1 8.8582 -2.4415 -5.6886 44 1 7.3525 -3.3903 -5.6768 45 1 11.1441 -1.1867 -4.4649 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289501920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:34 Heat of formation + Delta-G solvation = -104.350519 kcal Electronic energy + Delta-G solvation = -28871.495816 eV Core-core repulsion = 24822.357872 eV Total energy + Delta-G solvation = -4049.137944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.66161 -38.80082 -38.35205 -37.89442 -37.14691 -36.90040 -34.48538 -34.10668 -32.16467 -30.91644 -29.31518 -28.10437 -27.23323 -26.99683 -24.85688 -23.90387 -22.70212 -22.47808 -20.35633 -19.27665 -18.78079 -18.37218 -18.24142 -18.05420 -17.42597 -16.98317 -16.65052 -16.35361 -15.91005 -15.63273 -15.28166 -15.10814 -14.98538 -14.76163 -14.48451 -14.37638 -14.02455 -13.73466 -13.51947 -13.44944 -13.23268 -13.15027 -13.00456 -12.96380 -12.78279 -12.74318 -12.68561 -12.65009 -12.23020 -12.17069 -12.12242 -12.09208 -11.85183 -11.18429 -10.70870 -10.59487 -10.46393 -10.41515 -9.66844 -9.34494 -8.05687 -6.20870 -0.29420 0.18203 0.35555 1.49628 1.50556 1.57960 2.01636 2.20076 2.48913 2.62667 2.81038 3.22789 3.37532 3.46134 3.87569 3.91294 4.01137 4.09796 4.12846 4.26572 4.40113 4.44164 4.45667 4.54881 4.64502 4.70819 4.75849 4.77320 4.79389 4.95247 4.98563 5.02801 5.15945 5.17176 5.21209 5.26628 5.36027 5.56987 5.62677 5.69095 5.85971 6.08150 6.19842 6.29286 6.31540 6.88045 6.89175 7.48770 8.98858 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.003873 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.133927 B = 7228.588961 C = 8981.912362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.321 6.321 3 C 0.301 3.699 4 N -0.558 5.558 5 C 0.126 3.874 6 C -0.202 4.202 7 C -0.041 4.041 8 C -0.164 4.164 9 C -0.066 4.066 10 C 0.129 3.871 11 N -1.117 6.117 12 S 2.798 3.202 13 O -1.009 7.009 14 O -1.018 7.018 15 N -0.996 5.996 16 C 0.100 3.900 17 C 0.273 3.727 18 H 0.025 0.975 19 C -0.140 4.140 20 C -0.528 4.528 21 H 0.072 0.928 22 C 0.016 3.984 23 N -0.920 5.920 24 Si 0.960 3.040 25 H -0.292 1.292 26 H -0.270 1.270 27 H -0.267 1.267 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.060 0.940 31 H 0.187 0.813 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.422 0.578 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.017 0.983 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.215 10.953 9.695 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.123 3.877 4 N -0.282 5.282 5 C -0.029 4.029 6 C -0.221 4.221 7 C -0.066 4.066 8 C -0.168 4.168 9 C -0.105 4.105 10 C 0.002 3.998 11 N -0.879 5.879 12 S 2.807 3.193 13 O -0.992 6.992 14 O -1.002 7.002 15 N -0.838 5.838 16 C -0.046 4.046 17 C 0.169 3.831 18 H 0.043 0.957 19 C -0.199 4.199 20 C -0.568 4.568 21 H 0.090 0.910 22 C -0.184 4.184 23 N -0.559 5.559 24 Si 0.786 3.214 25 H -0.218 1.218 26 H -0.195 1.195 27 H -0.192 1.192 28 H 0.074 0.926 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.204 0.796 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.257 0.743 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.036 0.964 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.319 9.696 9.419 21.191 hybrid contribution 1.598 0.844 0.246 1.824 sum -14.721 10.541 9.666 20.524 Atomic orbital electron populations 1.22998 0.76232 1.04216 1.02225 1.86254 1.24037 1.24833 1.87722 1.19936 0.89465 0.85055 0.93270 1.67351 1.41431 0.99444 1.19993 1.22986 0.93983 0.93677 0.92284 1.22346 0.94558 1.00825 1.04418 1.21769 1.02028 0.90431 0.92385 1.19868 0.90845 0.97172 1.08904 1.20482 1.00448 0.94107 0.95468 1.21243 0.94260 0.85284 0.98969 1.55653 1.62189 1.38639 1.31434 1.01148 0.72060 0.73077 0.73047 1.93522 1.37048 1.85763 1.82897 1.93539 1.67673 1.53970 1.85012 1.57590 1.16878 1.62955 1.46349 1.21382 0.93887 0.95456 0.93825 1.18408 0.74010 0.96404 0.94315 0.95670 1.21955 1.02764 0.96878 0.98334 1.21590 0.92395 0.94155 1.48639 0.91018 1.25714 0.97543 1.00371 0.94778 1.70023 1.04737 1.31892 1.49254 0.85584 0.76751 0.80083 0.79023 1.21829 1.19477 1.19195 0.92622 0.86881 0.92107 0.79625 0.81509 0.82204 0.89896 0.88330 0.91319 0.91653 0.74268 0.93094 0.91184 0.90219 0.93772 0.91130 0.96393 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.38 113.37 1.18 1.88 16 2 O -0.32 -7.99 9.63 -89.85 -0.87 -8.86 16 3 C 0.30 7.30 7.47 84.78 0.63 7.93 16 4 N -0.56 -12.36 9.22 -308.94 -2.85 -15.21 16 5 C 0.13 2.02 11.18 84.64 0.95 2.97 16 6 C -0.20 -2.86 10.11 22.37 0.23 -2.64 16 7 C -0.04 -0.71 9.83 22.44 0.22 -0.49 16 8 C -0.16 -3.58 5.17 -19.67 -0.10 -3.68 16 9 C -0.07 -1.44 5.23 29.85 0.16 -1.29 16 10 C 0.13 3.48 6.23 86.38 0.54 4.02 16 11 N -1.12 -34.64 6.05 -187.50 -1.14 -35.78 16 12 S 2.80 110.53 6.09 -56.49 -0.34 110.19 16 13 O -1.01 -41.69 16.68 -128.00 -2.14 -43.83 16 14 O -1.02 -47.53 16.70 -128.00 -2.14 -49.67 16 15 N -1.00 -40.86 3.12 -520.45 -1.62 -42.48 16 16 C 0.10 3.46 9.28 127.77 1.19 4.64 16 17 C 0.27 13.33 2.62 44.24 0.12 13.44 16 18 H 0.03 1.41 6.91 -2.39 -0.02 1.39 16 19 C -0.14 -6.72 8.97 71.98 0.65 -6.08 16 20 C -0.53 -26.24 7.99 25.60 0.20 -26.04 16 21 H 0.07 3.35 7.33 -2.91 -0.02 3.33 16 22 C 0.02 0.79 5.30 84.66 0.45 1.24 16 23 N -0.92 -50.58 11.32 21.45 0.24 -50.34 16 24 Si 0.96 40.09 29.54 68.60 2.03 42.12 16 25 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 27 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 28 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 29 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 31 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.08 1.84 7.71 -2.39 -0.02 1.83 16 35 H 0.10 1.82 8.06 -2.38 -0.02 1.80 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.90 7.75 -2.39 -0.02 1.88 16 38 H 0.42 11.49 8.65 -96.75 -0.84 10.65 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 2.09 7.79 -2.38 -0.02 2.07 16 41 H 0.08 2.74 7.02 -2.39 -0.02 2.73 16 42 H 0.04 1.96 7.67 -2.39 -0.02 1.94 16 43 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 44 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -70.01 385.66 -2.26 -72.27 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.16 Total: 25.67 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 6.40 Total: -4.08 kcal Atomic # 7 Polarization: -138.44 SS G_CDS: -5.36 Total: -143.81 kcal Atomic # 8 Polarization: -97.21 SS G_CDS: -5.14 Total: -102.35 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: 110.53 SS G_CDS: -0.34 Total: 110.19 kcal Total: -70.01 -2.26 -72.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289501920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.082 kcal (2) G-P(sol) polarization free energy of solvation -70.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds