Wall clock time and date at job start Wed Apr 1 2020 01:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99496 * 2 1 4 4 C 1.53005 * 109.46977 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46796 * 65.00508 * 4 3 2 6 6 C 1.46501 * 120.00037 * 274.99994 * 5 4 3 7 7 C 1.50703 * 109.47196 * 274.99950 * 6 5 4 8 8 H 1.08004 * 119.99863 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00323 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00331 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00016 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47098 * 89.99712 * 11 9 7 13 13 H 1.48498 * 109.47250 * 209.99837 * 11 9 7 14 14 H 1.48495 * 109.46869 * 329.99800 * 11 9 7 15 15 S 1.65605 * 119.99970 * 94.99817 * 5 4 3 16 16 O 1.42098 * 106.40166 * 336.45850 * 15 5 4 17 17 O 1.42103 * 106.39981 * 203.54057 * 15 5 4 18 18 N 1.65599 * 107.21700 * 90.00051 * 15 5 4 19 19 C 1.46506 * 119.99913 * 64.99803 * 18 15 5 20 20 H 1.09000 * 109.47212 * 335.00023 * 19 18 15 21 21 C 1.53002 * 109.47035 * 95.00258 * 19 18 15 22 22 C 1.50701 * 109.46956 * 215.00072 * 19 18 15 23 23 C 1.38669 * 120.41794 * 139.72582 * 22 19 18 24 24 C 1.38634 * 118.42120 * 179.78287 * 23 22 19 25 25 C 1.38228 * 119.15675 * 0.50986 * 24 23 22 26 26 N 1.31853 * 120.76618 * 359.72705 * 25 24 23 27 27 C 1.31888 * 121.72413 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46817 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47930 * 299.99746 * 1 2 3 30 30 H 1.09006 * 109.47431 * 60.00334 * 1 2 3 31 31 H 1.08998 * 109.46742 * 60.00101 * 3 2 1 32 32 H 1.08996 * 109.47224 * 299.99975 * 3 2 1 33 33 H 1.08996 * 109.47330 * 305.00825 * 4 3 2 34 34 H 1.08997 * 109.47316 * 185.00462 * 4 3 2 35 35 H 1.08997 * 109.47302 * 34.99577 * 6 5 4 36 36 H 1.09003 * 109.47210 * 154.99854 * 6 5 4 37 37 H 0.96998 * 120.00163 * 180.02562 * 10 9 7 38 38 H 0.96992 * 120.00035 * 244.99822 * 18 15 5 39 39 H 1.09004 * 109.47059 * 59.99372 * 21 19 18 40 40 H 1.08992 * 109.47060 * 179.97438 * 21 19 18 41 41 H 1.09004 * 109.46930 * 299.99770 * 21 19 18 42 42 H 1.07998 * 120.79143 * 0.02562 * 23 22 19 43 43 H 1.07993 * 120.42210 * 180.21761 * 24 23 22 44 44 H 1.08004 * 119.61773 * 179.74938 * 25 24 23 45 45 H 1.08003 * 119.61402 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1849 0.0006 5 7 3.9766 0.5643 -1.2510 6 6 4.0015 -0.8952 -1.3760 7 6 5.3001 -1.4246 -0.8242 8 1 6.0334 -0.7422 -0.4204 9 6 5.5516 -2.7801 -0.8339 10 7 6.6847 -3.2422 -0.3520 11 14 4.2831 -3.9605 -1.5318 12 1 4.5335 -4.1553 -2.9825 13 1 4.3845 -5.2665 -0.8322 14 1 2.9229 -3.3981 -1.3353 15 16 4.4472 1.5126 -2.5244 16 8 3.8193 2.7738 -2.3391 17 8 4.2784 0.7249 -3.6951 18 7 6.0749 1.7728 -2.3666 19 6 7.0100 0.6500 -2.4730 20 1 6.4970 -0.2759 -2.2129 21 6 7.5342 0.5571 -3.9074 22 6 8.1647 0.8667 -1.5292 23 6 8.6882 -0.1937 -0.8050 24 6 9.7533 0.0516 0.0477 25 6 10.2477 1.3380 0.1550 26 7 9.7216 2.3234 -0.5456 27 6 8.7119 2.1256 -1.3707 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3635 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6884 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 3.8508 0.5686 0.8426 34 1 3.9783 2.1767 0.0903 35 1 3.1685 -1.3219 -0.8173 36 1 3.9137 -1.1714 -2.4268 37 1 6.8618 -4.1958 -0.3592 38 1 6.4093 2.6686 -2.2036 39 1 8.0471 1.4831 -4.1675 40 1 8.2302 -0.2780 -3.9865 41 1 6.6990 0.4003 -4.5900 42 1 8.2784 -1.1878 -0.9059 43 1 10.1883 -0.7512 0.6244 44 1 11.0747 1.5383 0.8202 45 1 8.3070 2.9577 -1.9277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336928701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:52 Heat of formation + Delta-G solvation = -103.551868 kcal Electronic energy + Delta-G solvation = -30142.482347 eV Core-core repulsion = 26093.379035 eV Total energy + Delta-G solvation = -4049.103312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12777 -39.09793 -38.37573 -37.42931 -36.94104 -36.87240 -34.48498 -33.23830 -31.91203 -31.33508 -30.05247 -28.78736 -26.99707 -25.11926 -24.49060 -24.15816 -23.21791 -22.20626 -20.37955 -19.15074 -18.75993 -18.54494 -17.88599 -17.50562 -17.09106 -17.03545 -16.78829 -16.34203 -16.03226 -15.72232 -15.47197 -15.27825 -14.94730 -14.54294 -14.42856 -14.22055 -13.97258 -13.77439 -13.66592 -13.50256 -13.45443 -13.32445 -13.19457 -12.99759 -12.98648 -12.72648 -12.50357 -12.45766 -12.21960 -12.03285 -11.95149 -11.87368 -11.44791 -10.69900 -10.65368 -10.53515 -10.46919 -10.28539 -9.85033 -9.68444 -8.18151 -6.16497 -0.31520 0.25352 0.46618 1.40074 1.45846 1.54020 1.96504 2.43078 2.58685 2.95220 2.97168 3.15969 3.41662 3.55938 3.83126 3.91211 4.12293 4.17622 4.19523 4.29212 4.39000 4.39596 4.44955 4.49712 4.54836 4.55407 4.59065 4.72116 4.80249 4.86266 4.89984 4.94427 5.01741 5.19060 5.26622 5.29679 5.44943 5.49289 5.59785 5.63185 5.80062 5.87969 6.18073 6.35508 6.43298 6.84722 7.06689 7.44827 8.93068 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.005690 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.759245 B = 4919.357148 C = 6219.957280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.408 6.408 3 C 0.042 3.958 4 C 0.128 3.872 5 N -0.984 5.984 6 C 0.221 3.779 7 C -0.533 4.533 8 H 0.079 0.921 9 C 0.044 3.956 10 N -0.914 5.914 11 Si 0.902 3.098 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.256 1.256 15 S 2.797 3.203 16 O -1.002 7.002 17 O -1.007 7.007 18 N -1.109 6.109 19 C 0.175 3.825 20 H 0.116 0.884 21 C -0.160 4.160 22 C -0.131 4.131 23 C -0.068 4.068 24 C -0.171 4.171 25 C 0.088 3.912 26 N -0.503 5.503 27 C 0.095 3.905 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.026 0.974 37 H 0.265 0.735 38 H 0.418 0.582 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.134 0.866 43 H 0.146 0.854 44 H 0.183 0.817 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 8.987 0.990 9.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.327 6.327 3 C -0.036 4.036 4 C 0.002 3.998 5 N -0.824 5.824 6 C 0.096 3.904 7 C -0.572 4.572 8 H 0.097 0.903 9 C -0.157 4.157 10 N -0.553 5.553 11 Si 0.728 3.272 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.181 1.181 15 S 2.805 3.195 16 O -0.987 6.987 17 O -0.991 6.991 18 N -0.870 5.870 19 C 0.067 3.933 20 H 0.134 0.866 21 C -0.219 4.219 22 C -0.135 4.135 23 C -0.094 4.094 24 C -0.190 4.190 25 C -0.068 4.068 26 N -0.212 5.212 27 C -0.062 4.062 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.254 0.746 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.200 0.800 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.851 9.649 0.372 9.693 hybrid contribution -0.704 -1.605 0.013 1.753 sum -1.555 8.043 0.385 8.201 Atomic orbital electron populations 1.22902 0.80346 1.03281 1.00748 1.87992 1.20818 1.28436 1.95497 1.23163 0.94246 0.84783 1.01389 1.21356 0.92562 0.98760 0.87161 1.57343 1.79411 1.16958 1.28679 1.19401 0.97728 0.76358 0.96934 1.21686 1.02441 0.92876 1.40199 0.90326 1.25245 0.96191 0.99230 0.95037 1.69879 1.24383 1.14332 1.46683 0.86398 0.82226 0.79585 0.78968 1.20224 1.21221 1.18054 1.01307 0.72978 0.71874 0.73341 1.93538 1.74977 1.43000 1.87149 1.93535 1.86008 1.71728 1.47787 1.55818 1.24972 1.16382 1.89829 1.20060 0.88503 0.90478 0.94229 0.86634 1.22247 1.01749 1.03040 0.94851 1.20859 0.98395 0.95141 0.99088 1.21962 0.94233 1.00380 0.92839 1.22340 0.97468 0.99409 0.99827 1.23167 0.98842 0.88202 0.96609 1.67716 1.10636 1.35718 1.07105 1.22664 0.92302 0.95736 0.95472 0.89445 0.92301 0.93921 0.89693 0.93628 0.89715 0.87676 0.93310 0.95594 0.92598 0.74596 0.90543 0.91452 0.92060 0.84770 0.83586 0.80045 0.81503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -13.42 9.02 -148.98 -1.34 -14.77 16 3 C 0.04 1.23 6.28 71.98 0.45 1.68 16 4 C 0.13 4.06 5.79 86.38 0.50 4.56 16 5 N -0.98 -37.35 2.81 -519.84 -1.46 -38.82 16 6 C 0.22 9.82 4.21 85.63 0.36 10.18 16 7 C -0.53 -25.71 7.46 25.60 0.19 -25.52 16 8 H 0.08 3.92 6.31 -2.91 -0.02 3.90 16 9 C 0.04 2.23 5.47 84.65 0.46 2.70 16 10 N -0.91 -47.87 13.57 21.44 0.29 -47.58 16 11 Si 0.90 41.05 27.47 68.60 1.88 42.94 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.26 -11.44 6.54 99.48 0.65 -10.79 16 15 S 2.80 102.46 6.01 -56.49 -0.34 102.12 16 16 O -1.00 -36.74 17.11 -128.00 -2.19 -38.93 16 17 O -1.01 -43.26 15.95 -128.00 -2.04 -45.30 16 18 N -1.11 -34.52 5.49 -172.51 -0.95 -35.47 16 19 C 0.17 5.97 2.73 44.25 0.12 6.09 16 20 H 0.12 4.80 4.14 -2.39 -0.01 4.79 16 21 C -0.16 -4.93 9.50 71.98 0.68 -4.24 16 22 C -0.13 -4.29 4.93 -19.78 -0.10 -4.39 16 23 C -0.07 -2.41 9.15 22.47 0.21 -2.20 16 24 C -0.17 -5.08 10.11 22.36 0.23 -4.85 16 25 C 0.09 2.35 11.18 84.69 0.95 3.29 16 26 N -0.50 -14.69 10.36 -195.84 -2.03 -16.72 16 27 C 0.10 2.74 10.33 84.67 0.87 3.62 16 28 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 2.83 8.11 -2.39 -0.02 2.81 16 34 H 0.11 2.81 7.61 -2.39 -0.02 2.79 16 35 H 0.05 2.25 5.66 -2.39 -0.01 2.23 16 36 H 0.03 1.23 6.34 -2.39 -0.02 1.22 16 37 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 38 H 0.42 10.46 7.11 -96.76 -0.69 9.77 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.06 2.02 7.64 -2.38 -0.02 2.00 16 42 H 0.13 5.71 7.52 -2.91 -0.02 5.68 16 43 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 44 H 0.18 3.47 8.06 -2.91 -0.02 3.44 16 45 H 0.17 3.88 6.83 -2.91 -0.02 3.87 16 Total: -1.00 -62.94 375.39 -1.73 -64.67 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.27 Total: 35.12 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 6.18 Total: -7.27 kcal Atomic # 7 Polarization: -134.44 SS G_CDS: -4.15 Total: -138.58 kcal Atomic # 8 Polarization: -93.42 SS G_CDS: -5.58 Total: -99.00 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.88 Total: 42.94 kcal Atomic # 16 Polarization: 102.46 SS G_CDS: -0.34 Total: 102.12 kcal Total: -62.94 -1.73 -64.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336928701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.881 kcal (2) G-P(sol) polarization free energy of solvation -62.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds