Wall clock time and date at job start Wed Apr 1 2020 02:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46911 * 2 1 4 4 C 1.46499 * 120.00306 * 274.99789 * 3 2 1 5 5 C 1.50702 * 109.47049 * 280.11319 * 4 3 2 6 6 H 1.08000 * 119.99836 * 4.16620 * 5 4 3 7 7 C 1.37875 * 119.99657 * 184.16599 * 5 4 3 8 8 N 1.31517 * 120.00212 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99517 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47651 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47202 * 119.99988 * 9 7 5 12 12 H 1.48504 * 109.46801 * 239.99370 * 9 7 5 13 13 S 1.65601 * 119.99874 * 94.99955 * 3 2 1 14 14 O 1.42104 * 106.40419 * 330.07749 * 13 3 2 15 15 O 1.42099 * 106.40406 * 197.15573 * 13 3 2 16 16 N 1.65601 * 107.22079 * 83.61354 * 13 3 2 17 17 C 1.46504 * 119.99521 * 65.39143 * 16 13 3 18 18 C 1.52998 * 109.46951 * 165.64488 * 17 16 13 19 19 C 1.50696 * 109.47223 * 180.02562 * 18 17 16 20 20 C 1.38424 * 120.44298 * 264.99908 * 19 18 17 21 21 C 1.38789 * 118.48241 * 179.97438 * 20 19 18 22 22 C 1.38089 * 119.28895 * 0.02562 * 21 20 19 23 23 N 1.31933 * 120.83506 * 359.97179 * 22 21 20 24 24 C 1.32272 * 121.64824 * 0.02562 * 23 22 21 25 25 O 1.35678 * 119.68393 * 179.97438 * 24 23 22 26 26 C 1.42892 * 116.99986 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47857 * 299.99772 * 1 2 3 28 28 H 1.09004 * 109.47286 * 59.99821 * 1 2 3 29 29 H 1.09008 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47064 * 240.00077 * 2 1 3 31 31 H 1.09006 * 109.46992 * 119.99724 * 2 1 3 32 32 H 1.08998 * 109.46936 * 40.11020 * 4 3 2 33 33 H 1.08998 * 109.46936 * 160.10749 * 4 3 2 34 34 H 0.96999 * 119.99623 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00298 * 245.39655 * 16 13 3 36 36 H 1.09005 * 109.46841 * 45.64717 * 17 16 13 37 37 H 1.08992 * 109.47253 * 285.64642 * 17 16 13 38 38 H 1.09001 * 109.47148 * 59.99921 * 18 17 16 39 39 H 1.09006 * 109.47474 * 300.00294 * 18 17 16 40 40 H 1.07996 * 120.75383 * 359.95667 * 20 19 18 41 41 H 1.07999 * 120.34946 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.57761 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47229 * 299.99569 * 26 25 24 44 44 H 1.09000 * 109.47360 * 59.99968 * 26 25 24 45 45 H 1.09007 * 109.47020 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4377 1.6937 -1.9434 6 1 4.0484 0.9131 -1.5142 7 6 3.8286 2.3105 -3.1128 8 7 3.0846 3.2607 -3.6356 9 14 5.4142 1.7955 -3.9554 10 1 6.0625 0.7134 -3.1718 11 1 5.1106 1.3031 -5.3231 12 1 6.3304 2.9611 -4.0411 13 16 2.4120 2.1202 1.4287 14 8 1.5763 1.5432 2.4227 15 8 2.4523 3.5152 1.1612 16 7 3.9615 1.6708 1.8023 17 6 5.0728 2.0909 0.9451 18 6 6.3963 1.8647 1.6785 19 6 7.5395 2.2974 0.7971 20 6 8.2036 1.3753 0.0066 21 6 9.2502 1.8184 -0.7900 22 6 9.5953 3.1553 -0.7700 23 7 8.9433 4.0106 -0.0058 24 6 7.9407 3.6267 0.7668 25 8 7.2982 4.5402 1.5373 26 6 7.7578 5.8910 1.4613 27 1 -0.3635 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3119 1.8787 -1.9111 33 1 2.1831 3.1802 -1.0654 34 1 3.3595 3.6944 -4.4586 35 1 4.1333 1.1295 2.5886 36 1 4.9666 3.1489 0.7050 37 1 5.0629 1.5068 0.0250 38 1 6.5025 0.8068 1.9187 39 1 6.4063 2.4489 2.5988 40 1 7.9141 0.3349 0.0100 41 1 9.7893 1.1247 -1.4181 42 1 10.4087 3.5052 -1.3884 43 1 8.8039 5.9365 1.7641 44 1 7.6600 6.2511 0.4371 45 1 7.1603 6.5160 2.1251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352593607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:41 Heat of formation + Delta-G solvation = -110.894792 kcal Electronic energy + Delta-G solvation = -29478.690310 eV Core-core repulsion = 25429.268585 eV Total energy + Delta-G solvation = -4049.421725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66395 -38.81513 -38.31736 -37.68726 -37.11178 -36.87124 -34.66244 -34.10875 -32.17803 -31.49056 -29.32933 -28.47958 -28.13172 -24.94149 -24.84986 -23.93052 -23.26605 -22.53587 -20.35303 -19.30710 -18.70701 -18.58166 -18.23062 -18.07610 -17.39194 -16.98642 -16.65513 -16.36090 -16.05352 -15.61379 -15.41890 -15.19683 -14.91840 -14.77985 -14.60522 -14.38299 -14.04746 -13.77318 -13.68326 -13.51802 -13.30026 -13.17592 -13.01973 -12.97181 -12.75974 -12.73993 -12.72140 -12.64078 -12.31026 -12.17432 -12.10912 -12.05242 -11.68630 -11.54380 -10.70777 -10.61579 -10.57935 -10.36133 -9.76485 -9.35337 -8.15083 -6.27469 -0.28288 0.17860 0.35073 1.40340 1.42119 1.52719 2.02900 2.18804 2.42690 2.63199 2.80381 3.17916 3.37303 3.49214 3.87970 3.91222 4.02105 4.10988 4.12770 4.30660 4.39362 4.40081 4.43173 4.45494 4.49645 4.59035 4.68312 4.72518 4.76670 4.81918 4.99352 5.02092 5.17497 5.17881 5.25170 5.30553 5.35519 5.44648 5.55069 5.56204 5.79823 5.94211 6.13390 6.26234 6.29685 6.84540 6.87611 7.41939 8.93450 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.005112 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.853613 B = 5476.307967 C = 6960.089661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.258 3.742 5 C -0.530 4.530 6 H 0.080 0.920 7 C 0.010 3.990 8 N -0.930 5.930 9 Si 0.947 3.053 10 H -0.240 1.240 11 H -0.282 1.282 12 H -0.293 1.293 13 S 2.797 3.203 14 O -1.004 7.004 15 O -1.021 7.021 16 N -1.111 6.111 17 C 0.130 3.870 18 C -0.062 4.062 19 C -0.165 4.165 20 C -0.041 4.041 21 C -0.207 4.207 22 C 0.119 3.881 23 N -0.562 5.562 24 C 0.298 3.702 25 O -0.321 6.321 26 C 0.038 3.962 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.262 0.738 35 H 0.425 0.575 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.185 0.815 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.048 -7.367 8.945 16.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.134 3.866 5 C -0.569 4.569 6 H 0.098 0.902 7 C -0.189 4.189 8 N -0.570 5.570 9 Si 0.772 3.228 10 H -0.163 1.163 11 H -0.208 1.208 12 H -0.220 1.220 13 S 2.805 3.195 14 O -0.988 6.988 15 O -1.005 7.005 16 N -0.874 5.874 17 C 0.004 3.996 18 C -0.101 4.101 19 C -0.169 4.169 20 C -0.066 4.066 21 C -0.227 4.227 22 C -0.036 4.036 23 N -0.286 5.286 24 C 0.120 3.880 25 O -0.228 6.228 26 C -0.056 4.056 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.187 0.813 41 H 0.187 0.813 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.431 -5.690 9.353 15.828 hybrid contribution 0.610 -0.417 -0.947 1.201 sum 12.041 -6.108 8.406 15.904 Atomic orbital electron populations 1.22206 0.96150 1.03194 1.01268 1.21263 0.94491 0.81087 1.03478 1.57610 1.79330 1.24200 1.22492 1.18745 0.96630 0.90958 0.80279 1.21842 1.07159 1.20155 1.07739 0.90152 1.25797 1.00173 0.94849 0.98118 1.70089 1.39951 1.25957 1.21031 0.85656 0.79761 0.78622 0.78800 1.16315 1.20837 1.21969 1.01185 0.73228 0.72780 0.72304 1.93533 1.66227 1.79570 1.59467 1.93530 1.87301 1.33990 1.85690 1.55515 1.23614 1.69932 1.38341 1.21223 0.85650 0.99305 0.93432 1.20522 0.88662 1.03934 0.96983 1.19985 1.01665 0.91036 1.04200 1.21820 0.92628 1.00835 0.91326 1.22387 1.00153 0.97637 1.02526 1.22979 0.97034 0.89934 0.93639 1.67302 1.09995 1.40633 1.10654 1.20021 0.89706 0.88573 0.89746 1.86235 1.56291 1.19733 1.60587 1.22986 1.01159 0.78810 1.02685 0.93442 0.93607 0.89016 0.89838 0.89366 0.96471 0.96524 0.92910 0.73899 0.94013 0.90774 0.86913 0.89842 0.81308 0.81283 0.79818 0.91571 0.93546 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 10.24 71.98 0.74 -4.39 16 2 C 0.12 3.96 6.02 86.38 0.52 4.48 16 3 N -1.00 -40.54 2.84 -519.85 -1.48 -42.01 16 4 C 0.26 13.03 5.46 85.63 0.47 13.50 16 5 C -0.53 -26.91 8.51 25.60 0.22 -26.69 16 6 H 0.08 3.74 6.47 -2.91 -0.02 3.72 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -54.55 13.29 21.45 0.28 -54.27 16 9 Si 0.95 41.29 29.54 68.60 2.03 43.32 16 10 H -0.24 -9.25 7.11 99.48 0.71 -8.54 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 13 S 2.80 111.60 6.07 -56.49 -0.34 111.25 16 14 O -1.00 -39.85 17.17 -128.00 -2.20 -42.05 16 15 O -1.02 -50.60 16.01 -128.00 -2.05 -52.65 16 16 N -1.11 -34.49 6.06 -187.49 -1.14 -35.62 16 17 C 0.13 4.37 6.19 86.38 0.53 4.90 16 18 C -0.06 -1.56 5.23 29.85 0.16 -1.40 16 19 C -0.17 -4.59 5.17 -19.67 -0.10 -4.69 16 20 C -0.04 -0.92 9.83 22.45 0.22 -0.70 16 21 C -0.21 -4.28 10.11 22.37 0.23 -4.05 16 22 C 0.12 2.81 11.18 84.64 0.95 3.75 16 23 N -0.56 -16.84 9.22 -308.93 -2.85 -19.69 16 24 C 0.30 9.44 7.47 84.78 0.63 10.07 16 25 O -0.32 -10.34 9.63 -89.96 -0.87 -11.21 16 26 C 0.04 0.99 10.38 113.37 1.18 2.16 16 27 H 0.05 1.52 7.96 -2.39 -0.02 1.50 16 28 H 0.04 1.50 8.10 -2.38 -0.02 1.48 16 29 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.08 2.67 8.09 -2.39 -0.02 2.65 16 31 H 0.09 2.37 7.79 -2.38 -0.02 2.35 16 32 H 0.02 0.92 8.10 -2.39 -0.02 0.90 16 33 H 0.02 0.97 6.77 -2.39 -0.02 0.96 16 34 H 0.26 14.64 8.31 -92.71 -0.77 13.86 16 35 H 0.42 9.77 8.65 -96.74 -0.84 8.93 16 36 H 0.04 1.73 7.76 -2.38 -0.02 1.71 16 37 H 0.07 2.65 5.86 -2.39 -0.01 2.64 16 38 H 0.11 2.00 8.06 -2.39 -0.02 1.98 16 39 H 0.08 2.07 7.71 -2.38 -0.02 2.05 16 40 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 42 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 44 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 45 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -75.36 388.67 -2.24 -77.60 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.16 Total: 27.40 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 6.20 Total: -2.06 kcal Atomic # 7 Polarization: -146.42 SS G_CDS: -5.17 Total: -151.60 kcal Atomic # 8 Polarization: -100.80 SS G_CDS: -5.11 Total: -105.91 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 111.60 SS G_CDS: -0.34 Total: 111.25 kcal Total: -75.36 -2.24 -77.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352593607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.295 kcal (2) G-P(sol) polarization free energy of solvation -75.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds