Wall clock time and date at job start Wed Apr 1 2020 02:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36875 * 126.49233 * 2 1 4 4 C 1.34868 * 107.02538 * 179.97438 * 3 2 1 5 5 N 1.33789 * 108.38362 * 0.22707 * 4 3 2 6 6 C 1.31448 * 109.25035 * 359.61931 * 5 4 3 7 7 C 1.47926 * 125.83234 * 180.11083 * 6 5 4 8 8 C 1.39581 * 120.10528 * 202.88351 * 7 6 5 9 9 C 1.37992 * 119.99760 * 180.02562 * 8 7 6 10 10 C 1.38245 * 120.21713 * 359.97438 * 9 8 7 11 11 C 1.38953 * 120.21371 * 0.02562 * 10 9 8 12 12 N 1.39972 * 119.99971 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99480 * 215.38318 * 12 11 10 14 14 O 1.21580 * 119.99945 * 354.93043 * 13 12 11 15 15 N 1.34777 * 119.99743 * 174.93262 * 13 12 11 16 16 C 1.46496 * 120.00027 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47359 * 180.02562 * 16 15 13 18 18 O 1.21300 * 119.99903 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00264 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00159 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99676 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00040 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00328 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00117 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46782 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47102 * 119.99864 * 24 22 20 27 27 H 1.48505 * 109.47063 * 240.00072 * 24 22 20 28 28 C 1.38630 * 119.99828 * 359.71652 * 11 10 9 29 29 H 1.08998 * 109.47240 * 90.00257 * 1 2 3 30 30 H 1.08999 * 109.47049 * 209.99931 * 1 2 3 31 31 H 1.08996 * 109.47631 * 330.00013 * 1 2 3 32 32 H 1.08001 * 126.48878 * 359.97432 * 3 2 1 33 33 H 1.08000 * 125.80742 * 179.97438 * 4 3 2 34 34 H 1.07995 * 120.00540 * 359.97438 * 8 7 6 35 35 H 1.08003 * 119.89127 * 180.02562 * 9 8 7 36 36 H 1.07994 * 119.89695 * 180.02562 * 10 9 8 37 37 H 0.96993 * 119.99846 * 35.37916 * 12 11 10 38 38 H 0.97003 * 120.00127 * 0.02562 * 15 13 12 39 39 H 1.08999 * 109.47012 * 299.99968 * 16 15 13 40 40 H 1.09004 * 109.47081 * 59.99800 * 16 15 13 41 41 H 0.96997 * 120.00022 * 0.02562 * 19 17 16 42 42 H 0.97002 * 120.00315 * 179.97438 * 23 22 20 43 43 H 1.08001 * 120.11113 * 180.27763 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2790 1.1004 0.0000 4 6 3.5506 0.6509 0.0006 5 7 3.5253 -0.6867 -0.0041 6 6 2.2764 -1.0966 0.0006 7 6 1.8275 -2.5061 0.0001 8 6 0.5530 -2.8348 -0.4645 9 6 0.1363 -4.1503 -0.4635 10 6 0.9778 -5.1463 -0.0039 11 6 2.2484 -4.8291 0.4606 12 7 3.0964 -5.8410 0.9255 13 6 3.9288 -5.6011 1.9580 14 8 4.0103 -4.4818 2.4257 15 7 4.6709 -6.6019 2.4719 16 6 5.5761 -6.3411 3.5938 17 6 6.2834 -7.6158 3.9755 18 8 6.0542 -8.6414 3.3696 19 7 7.1705 -7.6165 4.9900 20 6 7.8144 -8.7762 5.3369 21 1 7.6103 -9.6892 4.7974 22 6 8.7286 -8.7769 6.3832 23 7 8.9766 -7.6660 7.0400 24 14 9.6054 -10.3571 6.8563 25 1 9.1529 -11.4588 5.9694 26 1 11.0715 -10.1729 6.7091 27 1 9.2882 -10.6959 8.2670 28 6 2.6780 -3.5111 0.4586 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9629 2.1331 -0.0004 33 1 4.4382 1.2661 0.0003 34 1 -0.1074 -2.0596 -0.8240 35 1 -0.8500 -4.4028 -0.8237 36 1 0.6465 -6.1742 -0.0058 37 1 3.0849 -6.7147 0.5046 38 1 4.6061 -7.4948 2.0984 39 1 6.3114 -5.5918 3.3007 40 1 5.0030 -5.9741 4.4453 41 1 7.3535 -6.7965 5.4748 42 1 9.6146 -7.6667 7.7707 43 1 3.6669 -3.2630 0.8150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376815039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:48 Heat of formation + Delta-G solvation = 10.016676 kcal Electronic energy + Delta-G solvation = -27973.595668 eV Core-core repulsion = 23826.265858 eV Total energy + Delta-G solvation = -4147.329811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.97199 -41.75156 -40.33299 -39.46830 -36.32328 -35.97866 -35.39732 -34.98627 -33.38831 -32.87253 -30.96774 -29.47022 -28.84357 -27.95248 -26.43352 -24.44163 -23.77202 -22.32790 -21.67121 -21.42060 -21.15690 -20.13739 -19.63073 -18.82385 -17.54044 -17.47446 -17.32153 -16.99518 -16.67572 -16.59188 -16.28631 -16.02298 -15.79624 -15.52986 -15.22635 -15.02550 -14.81224 -14.48838 -14.14335 -14.02885 -13.96170 -13.78238 -13.64926 -13.55744 -13.51924 -12.92324 -12.55567 -12.45159 -12.35570 -12.11141 -11.61143 -11.58701 -11.22455 -10.96541 -10.63697 -10.57954 -10.35108 -10.26207 -10.10210 -9.23459 -8.88351 -8.51770 -6.02232 -0.06316 0.37554 1.22288 1.34669 1.38738 1.44561 1.57775 1.81395 1.87235 1.96411 2.18592 2.27668 2.90462 2.96165 3.15294 3.20634 3.34679 3.82761 3.94810 4.07992 4.15783 4.17905 4.26928 4.37418 4.39324 4.41541 4.48204 4.54136 4.56345 4.67252 4.72563 4.93617 5.18601 5.24612 5.29275 5.35600 5.37954 5.47515 5.53461 5.79369 5.87502 5.91264 6.00549 6.20276 6.46350 6.87488 7.02314 7.10324 7.35562 7.43981 7.92322 8.65383 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.001910 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.643205 B =14658.950371 C =15860.121643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.452 5.452 3 C -0.032 4.032 4 C -0.064 4.064 5 N -0.525 5.525 6 C 0.215 3.785 7 C -0.015 4.015 8 C -0.130 4.130 9 C -0.085 4.085 10 C -0.130 4.130 11 C 0.151 3.849 12 N -0.672 5.672 13 C 0.703 3.297 14 O -0.611 6.611 15 N -0.715 5.715 16 C 0.141 3.859 17 C 0.435 3.565 18 O -0.622 6.622 19 N -0.559 5.559 20 C -0.336 4.336 21 H 0.088 0.912 22 C -0.013 4.013 23 N -0.917 5.917 24 Si 0.999 3.001 25 H -0.269 1.269 26 H -0.272 1.272 27 H -0.271 1.271 28 C -0.112 4.112 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.221 0.779 33 H 0.182 0.818 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.159 0.841 37 H 0.425 0.575 38 H 0.414 0.586 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.307 14.839 -16.515 32.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.134 5.134 3 C -0.166 4.166 4 C -0.213 4.213 5 N -0.244 5.244 6 C -0.044 4.044 7 C -0.017 4.017 8 C -0.150 4.150 9 C -0.103 4.103 10 C -0.151 4.151 11 C 0.056 3.944 12 N -0.321 5.321 13 C 0.403 3.597 14 O -0.490 6.490 15 N -0.372 5.372 16 C 0.012 3.988 17 C 0.222 3.778 18 O -0.510 6.510 19 N -0.194 5.194 20 C -0.465 4.465 21 H 0.106 0.894 22 C -0.213 4.213 23 N -0.557 5.557 24 Si 0.822 3.178 25 H -0.193 1.193 26 H -0.197 1.197 27 H -0.196 1.196 28 C -0.134 4.134 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.237 0.763 33 H 0.200 0.800 34 H 0.174 0.826 35 H 0.192 0.808 36 H 0.177 0.823 37 H 0.264 0.736 38 H 0.252 0.748 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.666 14.674 -16.261 31.520 hybrid contribution 0.754 -0.333 0.562 0.998 sum -21.912 14.341 -15.699 30.533 Atomic orbital electron populations 1.22698 0.73845 1.06626 1.05624 1.45758 1.09140 1.05400 1.53071 1.23398 0.90334 0.93865 1.09014 1.22775 0.98594 0.90461 1.09462 1.70377 1.20111 1.13861 1.20092 1.21502 0.85615 0.89208 1.08050 1.17583 0.95505 0.86869 1.01769 1.21647 0.93991 0.98733 1.00608 1.21277 1.00753 0.90763 0.97548 1.21388 0.90148 1.02409 1.01201 1.17614 0.90814 0.87232 0.98759 1.42336 1.40221 1.16074 1.33508 1.15939 0.79316 0.84100 0.80353 1.90941 1.70736 1.22619 1.64736 1.44624 1.44040 1.12457 1.36119 1.20615 0.93182 0.94830 0.90131 1.20325 0.83785 0.90438 0.83275 1.90468 1.68679 1.35413 1.56466 1.41842 1.36213 1.12009 1.29379 1.19788 1.21011 0.89716 1.15996 0.89410 1.26171 0.97599 1.02011 0.95551 1.69694 1.35358 1.28248 1.22367 0.84785 0.77762 0.77055 0.78204 1.19303 1.19703 1.19618 1.21152 1.00339 0.92141 0.99783 0.87759 0.88468 0.86922 0.76270 0.80046 0.82564 0.80755 0.82307 0.73609 0.74808 0.89146 0.88861 0.76728 0.91068 0.87263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.35 9.43 127.77 1.20 1.55 16 2 N -0.45 -8.14 3.19 -538.83 -1.72 -9.86 16 3 C -0.03 -0.53 11.58 83.13 0.96 0.43 16 4 C -0.06 -1.57 11.84 83.62 0.99 -0.58 16 5 N -0.53 -17.27 11.07 -189.36 -2.10 -19.37 16 6 C 0.21 5.88 7.55 136.56 1.03 6.91 16 7 C -0.01 -0.37 5.83 -20.10 -0.12 -0.49 16 8 C -0.13 -2.00 8.47 22.54 0.19 -1.81 16 9 C -0.09 -1.02 10.02 22.21 0.22 -0.79 16 10 C -0.13 -2.08 9.96 22.44 0.22 -1.86 16 11 C 0.15 3.77 6.29 38.11 0.24 4.01 16 12 N -0.67 -16.99 5.34 -317.27 -1.69 -18.68 16 13 C 0.70 23.78 8.41 179.05 1.51 25.28 16 14 O -0.61 -25.47 13.80 -3.97 -0.05 -25.52 16 15 N -0.71 -24.20 5.53 -482.31 -2.67 -26.87 16 16 C 0.14 5.36 6.15 85.63 0.53 5.89 16 17 C 0.43 20.34 7.85 87.66 0.69 21.03 16 18 O -0.62 -32.15 15.24 -3.09 -0.05 -32.19 16 19 N -0.56 -28.51 5.29 -306.99 -1.62 -30.13 16 20 C -0.34 -18.66 9.68 84.04 0.81 -17.85 16 21 H 0.09 5.11 7.16 -2.91 -0.02 5.09 16 22 C -0.01 -0.67 5.50 84.92 0.47 -0.21 16 23 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 24 Si 1.00 42.14 29.55 68.60 2.03 44.17 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 28 C -0.11 -3.48 8.34 22.65 0.19 -3.29 16 29 H 0.10 0.21 7.88 -2.39 -0.02 0.19 16 30 H 0.10 0.63 6.18 -2.39 -0.01 0.61 16 31 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.22 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.18 3.61 8.06 -2.91 -0.02 3.58 16 34 H 0.16 1.30 5.19 -2.91 -0.02 1.28 16 35 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 36 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.43 7.60 8.84 -92.71 -0.82 6.79 16 38 H 0.41 13.19 7.46 -92.71 -0.69 12.50 16 39 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 41 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 42 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 43 H 0.11 4.40 6.18 -2.91 -0.02 4.38 16 Total: -1.00 -83.77 372.02 0.41 -83.35 By element: Atomic # 1 Polarization: 47.10 SS G_CDS: -1.13 Total: 45.97 kcal Atomic # 6 Polarization: 29.10 SS G_CDS: 9.14 Total: 38.24 kcal Atomic # 7 Polarization: -144.49 SS G_CDS: -9.52 Total: -154.01 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -0.10 Total: -57.72 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -83.77 0.41 -83.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376815039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.371 kcal (2) G-P(sol) polarization free energy of solvation -83.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds