Wall clock time and date at job start Wed Apr 1 2020 01:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47322 * 2 1 4 4 C 1.50699 * 109.47121 * 119.99803 * 2 1 3 5 5 H 1.08002 * 120.00386 * 119.99226 * 4 2 1 6 6 C 1.37884 * 119.99846 * 300.00138 * 4 2 1 7 7 N 1.31513 * 119.99940 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00036 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46808 * 59.99772 * 8 6 4 10 10 H 1.48497 * 109.47052 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47098 * 300.00082 * 8 6 4 12 12 N 1.46497 * 109.47163 * 239.99636 * 2 1 3 13 13 C 1.34774 * 120.00050 * 85.00306 * 12 2 1 14 14 O 1.21350 * 120.00246 * 359.97438 * 13 12 2 15 15 C 1.49361 * 120.00073 * 179.97438 * 13 12 2 16 16 O 1.21372 * 119.99780 * 0.02562 * 15 13 12 17 17 N 1.34774 * 120.00073 * 179.97438 * 15 13 12 18 18 C 1.39721 * 119.99998 * 185.27696 * 17 15 13 19 19 C 1.38929 * 120.07697 * 213.32721 * 18 17 15 20 20 C 1.38092 * 119.92469 * 180.02562 * 19 18 17 21 21 C 1.38292 * 120.07963 * 359.97438 * 20 19 18 22 22 C 1.50693 * 119.92720 * 179.97438 * 21 20 19 23 23 N 1.46500 * 109.47088 * 90.00668 * 22 21 20 24 24 C 1.34427 * 126.82607 * 125.00136 * 23 22 21 25 25 N 1.30838 * 108.07546 * 179.73280 * 24 23 22 26 26 C 1.33236 * 109.83030 * 0.26734 * 25 24 23 27 27 N 1.30713 * 108.94723 * 359.97438 * 26 25 24 28 28 C 1.38294 * 120.15014 * 0.25984 * 21 20 19 29 29 C 1.38105 * 120.07714 * 359.48937 * 28 21 20 30 30 H 1.08999 * 109.47459 * 300.00800 * 1 2 3 31 31 H 1.09002 * 109.47272 * 60.00307 * 1 2 3 32 32 H 1.09005 * 109.47794 * 180.02562 * 1 2 3 33 33 H 0.97002 * 120.00031 * 179.97438 * 7 6 4 34 34 H 0.97002 * 119.99790 * 265.00341 * 12 2 1 35 35 H 0.96996 * 119.99993 * 5.27274 * 17 15 13 36 36 H 1.08002 * 120.03537 * 0.02562 * 19 18 17 37 37 H 1.08007 * 119.96288 * 179.97438 * 20 19 18 38 38 H 1.08992 * 109.47372 * 330.00262 * 22 21 20 39 39 H 1.09009 * 109.47088 * 210.00202 * 22 21 20 40 40 H 1.08002 * 125.96121 * 0.02562 * 24 23 22 41 41 H 1.08004 * 125.52768 * 180.02562 * 26 25 24 42 42 H 1.08002 * 119.96398 * 179.72186 * 28 21 20 43 43 H 1.07991 * 120.04250 * 180.23379 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1202 4.0081 9 1 3.8062 -1.1207 4.0083 10 1 1.8267 -0.4196 5.2205 11 1 1.8257 -2.5201 4.0079 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8581 1.1589 -2.4118 15 6 2.6455 -0.7224 -3.5764 16 8 2.9341 -1.9001 -3.5218 17 7 2.7738 -0.0503 -4.7375 18 6 3.1338 -0.7316 -5.9030 19 6 3.9119 -0.1010 -6.8659 20 6 4.2655 -0.7772 -8.0169 21 6 3.8465 -2.0806 -8.2115 22 6 4.2339 -2.8150 -9.4691 23 7 5.5036 -3.5138 -9.2550 24 6 5.7424 -4.8243 -9.4353 25 7 6.9973 -5.0522 -9.1433 26 6 7.5874 -3.9178 -8.7689 27 7 6.7125 -2.9479 -8.8181 28 6 3.0678 -2.7097 -7.2573 29 6 2.7148 -2.0413 -6.1015 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3635 -1.0277 0.0005 33 1 0.7087 1.1616 3.4843 34 1 2.2489 -1.6319 -1.1525 35 1 2.6161 0.9064 -4.7641 36 1 4.2399 0.9168 -6.7144 37 1 4.8700 -0.2874 -8.7660 38 1 4.3445 -2.1026 -10.2865 39 1 3.4586 -3.5390 -9.7205 40 1 5.0249 -5.5599 -9.7680 41 1 8.6212 -3.8160 -8.4735 42 1 2.7385 -3.7262 -7.4145 43 1 2.1099 -2.5344 -5.3551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438877217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:31 Heat of formation + Delta-G solvation = 54.888448 kcal Electronic energy + Delta-G solvation = -28029.169341 eV Core-core repulsion = 23883.785317 eV Total energy + Delta-G solvation = -4145.384025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.31721 -40.92891 -39.38405 -38.07195 -35.86026 -35.04873 -33.97772 -32.46890 -31.49682 -31.23765 -30.54020 -29.22077 -26.93178 -25.38137 -24.57631 -23.34396 -22.58336 -22.21425 -21.43747 -20.73029 -19.71446 -18.78802 -17.77703 -17.55670 -16.71420 -16.35215 -15.88153 -15.83228 -15.60071 -15.26162 -15.07751 -14.81803 -14.43485 -14.31759 -14.08110 -13.81544 -13.60431 -13.31979 -13.16232 -12.89203 -12.53343 -12.51655 -11.98437 -11.85172 -11.52283 -11.30476 -11.16393 -11.03700 -10.86016 -10.63243 -10.41838 -10.31144 -10.26371 -10.07877 -10.00245 -9.27929 -9.19863 -9.11491 -8.66740 -8.38495 -8.19648 -6.21134 -4.31046 0.71078 1.14754 1.36233 1.72049 2.15164 2.56184 2.70964 3.23093 3.27923 3.30171 3.42479 3.66433 3.95725 3.98593 4.04029 4.27310 4.30071 4.57780 4.62118 4.67309 4.82717 4.96486 4.99719 5.09403 5.11916 5.28871 5.35182 5.71545 5.87491 5.94612 6.04171 6.14621 6.20077 6.21319 6.46859 6.66111 6.69925 6.78439 6.95747 6.99022 7.14710 7.33128 7.57046 7.70760 7.79816 7.81521 8.00168 8.36187 8.54207 8.79116 9.36064 10.84818 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018606 B = 0.001950 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.534526 B =14352.210626 C =15254.737848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.666 5.666 13 C 0.495 3.505 14 O -0.534 6.534 15 C 0.508 3.492 16 O -0.502 6.502 17 N -0.653 5.653 18 C 0.167 3.833 19 C -0.147 4.147 20 C -0.061 4.061 21 C -0.138 4.138 22 C 0.176 3.824 23 N -0.374 5.374 24 C 0.251 3.749 25 N -0.549 5.549 26 C 0.194 3.806 27 N -0.309 5.309 28 C -0.077 4.077 29 C -0.125 4.125 30 H 0.095 0.905 31 H 0.016 0.984 32 H 0.030 0.970 33 H 0.267 0.733 34 H 0.402 0.598 35 H 0.424 0.576 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.217 0.783 41 H 0.215 0.785 42 H 0.125 0.875 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 -6.460 -26.073 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.315 5.315 13 C 0.273 3.727 14 O -0.413 6.413 15 C 0.291 3.709 16 O -0.375 6.375 17 N -0.300 5.300 18 C 0.072 3.928 19 C -0.168 4.168 20 C -0.080 4.080 21 C -0.140 4.140 22 C 0.055 3.945 23 N -0.166 5.166 24 C -0.046 4.046 25 N -0.276 5.276 26 C -0.109 4.109 27 N -0.136 5.136 28 C -0.097 4.097 29 C -0.146 4.146 30 H 0.113 0.887 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.237 0.763 35 H 0.263 0.737 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.234 0.766 41 H 0.231 0.769 42 H 0.143 0.857 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.614 -5.857 -25.639 26.701 hybrid contribution 0.133 -0.495 0.874 1.013 sum 4.747 -6.352 -24.765 26.003 Atomic orbital electron populations 1.22101 0.97762 0.99591 1.01254 1.18993 0.91488 0.94146 0.79275 0.92752 1.21145 1.32953 1.13540 0.90001 0.91787 1.24881 0.94658 0.94928 0.99109 1.69878 1.35580 1.22297 1.24245 0.86439 0.79247 0.79610 0.81445 1.20068 1.21052 1.20023 1.46523 1.61156 1.14572 1.09268 1.19624 0.81298 0.87305 0.84487 1.90733 1.50851 1.15160 1.84557 1.21032 0.77761 0.87254 0.84819 1.90747 1.46127 1.15709 1.84912 1.43315 1.67116 1.13369 1.06215 1.17874 0.95460 0.93045 0.86410 1.20933 0.99467 1.01416 0.94957 1.20751 0.97065 0.93488 0.96711 1.19618 1.02277 0.95229 0.96850 1.20651 0.80782 0.96913 0.96201 1.50704 1.09581 1.07255 1.49012 1.26082 0.95061 0.86109 0.97376 1.70530 1.05748 1.28992 1.22310 1.26018 1.00749 0.85680 0.98440 1.78083 0.91061 1.22800 1.21695 1.20865 0.96870 0.99276 0.92640 1.21165 1.01326 0.94092 0.97980 0.88661 0.96462 0.95072 0.92349 0.76300 0.73738 0.85085 0.85399 0.88461 0.87202 0.76629 0.76856 0.85675 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.15 0.34 -3.22 16 2 C 0.26 6.49 2.56 -69.09 -0.18 6.31 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.20 11.32 55.43 0.63 -23.57 16 8 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.67 -14.05 5.06 -55.40 -0.28 -14.33 16 13 C 0.49 9.70 7.85 -11.63 -0.09 9.61 16 14 O -0.53 -11.52 16.15 5.50 0.09 -11.43 16 15 C 0.51 8.45 7.62 -11.63 -0.09 8.36 16 16 O -0.50 -8.99 14.16 5.48 0.08 -8.91 16 17 N -0.65 -8.76 5.32 -10.29 -0.05 -8.81 16 18 C 0.17 2.05 6.28 -83.75 -0.53 1.52 16 19 C -0.15 -1.48 9.96 -39.38 -0.39 -1.87 16 20 C -0.06 -0.54 9.69 -39.62 -0.38 -0.92 16 21 C -0.14 -1.14 5.34 -104.58 -0.56 -1.69 16 22 C 0.18 0.94 6.67 -5.20 -0.03 0.91 16 23 N -0.37 -3.04 3.68 -63.81 -0.24 -3.28 16 24 C 0.25 1.84 12.63 -90.65 -1.14 0.70 16 25 N -0.55 -5.58 11.19 -15.83 -0.18 -5.76 16 26 C 0.19 1.92 13.03 -91.82 -1.20 0.72 16 27 N -0.31 -3.32 12.56 29.29 0.37 -2.95 16 28 C -0.08 -0.73 9.69 -39.61 -0.38 -1.11 16 29 C -0.13 -1.52 8.65 -39.37 -0.34 -1.86 16 30 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.40 7.92 8.01 -40.82 -0.33 7.59 16 35 H 0.42 5.00 8.30 -40.82 -0.34 4.67 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.10 0.39 8.08 -51.93 -0.42 -0.03 16 39 H 0.11 0.22 8.03 -51.92 -0.42 -0.19 16 40 H 0.22 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.22 1.45 8.06 -52.48 -0.42 1.03 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.14 1.86 6.41 -52.49 -0.34 1.53 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -33.63 378.67 -9.32 -42.94 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.05 Total: 10.20 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -5.37 Total: 4.78 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.25 Total: -58.70 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.17 Total: -20.34 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.63 -9.32 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438877217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.831 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds