Wall clock time and date at job start Wed Apr 1 2020 01:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47322 * 2 1 4 4 C 1.50699 * 109.47121 * 119.99803 * 2 1 3 5 5 H 1.08002 * 120.00386 * 119.99226 * 4 2 1 6 6 C 1.37884 * 119.99846 * 300.00138 * 4 2 1 7 7 N 1.31513 * 119.99940 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00036 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46808 * 59.99772 * 8 6 4 10 10 H 1.48497 * 109.47052 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47098 * 300.00082 * 8 6 4 12 12 N 1.46497 * 109.47163 * 239.99636 * 2 1 3 13 13 C 1.34774 * 120.00050 * 85.00306 * 12 2 1 14 14 O 1.21350 * 120.00246 * 359.97438 * 13 12 2 15 15 C 1.49361 * 120.00073 * 179.97438 * 13 12 2 16 16 O 1.21372 * 119.99780 * 0.02562 * 15 13 12 17 17 N 1.34774 * 120.00073 * 179.97438 * 15 13 12 18 18 C 1.39721 * 119.99998 * 185.27696 * 17 15 13 19 19 C 1.38929 * 120.07697 * 213.32721 * 18 17 15 20 20 C 1.38092 * 119.92469 * 180.02562 * 19 18 17 21 21 C 1.38292 * 120.07963 * 359.97438 * 20 19 18 22 22 C 1.50693 * 119.92720 * 179.97438 * 21 20 19 23 23 N 1.46500 * 109.47088 * 90.00668 * 22 21 20 24 24 C 1.34427 * 126.82607 * 125.00136 * 23 22 21 25 25 N 1.30838 * 108.07546 * 179.73280 * 24 23 22 26 26 C 1.33236 * 109.83030 * 0.26734 * 25 24 23 27 27 N 1.30713 * 108.94723 * 359.97438 * 26 25 24 28 28 C 1.38294 * 120.15014 * 0.25984 * 21 20 19 29 29 C 1.38105 * 120.07714 * 359.48937 * 28 21 20 30 30 H 1.08999 * 109.47459 * 300.00800 * 1 2 3 31 31 H 1.09002 * 109.47272 * 60.00307 * 1 2 3 32 32 H 1.09005 * 109.47794 * 180.02562 * 1 2 3 33 33 H 0.97002 * 120.00031 * 179.97438 * 7 6 4 34 34 H 0.97002 * 119.99790 * 265.00341 * 12 2 1 35 35 H 0.96996 * 119.99993 * 5.27274 * 17 15 13 36 36 H 1.08002 * 120.03537 * 0.02562 * 19 18 17 37 37 H 1.08007 * 119.96288 * 179.97438 * 20 19 18 38 38 H 1.08992 * 109.47372 * 330.00262 * 22 21 20 39 39 H 1.09009 * 109.47088 * 210.00202 * 22 21 20 40 40 H 1.08002 * 125.96121 * 0.02562 * 24 23 22 41 41 H 1.08004 * 125.52768 * 180.02562 * 26 25 24 42 42 H 1.08002 * 119.96398 * 179.72186 * 28 21 20 43 43 H 1.07991 * 120.04250 * 180.23379 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1202 4.0081 9 1 3.8062 -1.1207 4.0083 10 1 1.8267 -0.4196 5.2205 11 1 1.8257 -2.5201 4.0079 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8581 1.1589 -2.4118 15 6 2.6455 -0.7224 -3.5764 16 8 2.9341 -1.9001 -3.5218 17 7 2.7738 -0.0503 -4.7375 18 6 3.1338 -0.7316 -5.9030 19 6 3.9119 -0.1010 -6.8659 20 6 4.2655 -0.7772 -8.0169 21 6 3.8465 -2.0806 -8.2115 22 6 4.2339 -2.8150 -9.4691 23 7 5.5036 -3.5138 -9.2550 24 6 5.7424 -4.8243 -9.4353 25 7 6.9973 -5.0522 -9.1433 26 6 7.5874 -3.9178 -8.7689 27 7 6.7125 -2.9479 -8.8181 28 6 3.0678 -2.7097 -7.2573 29 6 2.7148 -2.0413 -6.1015 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3635 -1.0277 0.0005 33 1 0.7087 1.1616 3.4843 34 1 2.2489 -1.6319 -1.1525 35 1 2.6161 0.9064 -4.7641 36 1 4.2399 0.9168 -6.7144 37 1 4.8700 -0.2874 -8.7660 38 1 4.3445 -2.1026 -10.2865 39 1 3.4586 -3.5390 -9.7205 40 1 5.0249 -5.5599 -9.7680 41 1 8.6212 -3.8160 -8.4735 42 1 2.7385 -3.7262 -7.4145 43 1 2.1099 -2.5344 -5.3551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438877217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:30 Heat of formation + Delta-G solvation = 33.612424 kcal Electronic energy + Delta-G solvation = -28030.091939 eV Core-core repulsion = 23883.785317 eV Total energy + Delta-G solvation = -4146.306622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.91145 -42.16341 -40.54818 -39.39573 -37.17235 -36.49758 -34.82883 -34.34110 -32.14557 -31.98399 -31.40556 -31.03093 -27.76569 -27.38799 -25.82672 -24.18013 -23.50293 -22.79918 -22.57287 -21.85770 -21.28778 -20.21450 -18.78248 -18.24977 -18.17940 -17.58706 -17.15642 -17.03770 -16.92036 -16.40942 -16.09711 -15.73609 -15.65580 -15.23831 -15.05230 -14.92959 -14.74090 -14.47852 -14.43673 -13.86165 -13.76039 -13.67844 -13.29178 -13.09486 -12.93858 -12.85443 -12.73893 -12.47077 -12.31888 -12.18971 -12.16026 -11.57591 -11.20382 -10.94771 -10.76921 -10.72629 -10.63986 -10.56468 -10.03779 -9.96371 -9.27574 -8.22546 -6.40041 -0.21208 0.37859 0.46076 0.79269 1.23745 1.44902 1.45870 1.54123 1.60292 2.06877 2.08330 2.36835 2.66888 2.76810 3.08141 3.40518 3.48725 3.60031 3.75406 3.93575 3.96966 4.17073 4.29093 4.36685 4.40674 4.56425 4.63134 4.66696 4.85213 4.98175 4.98511 5.07175 5.18215 5.26296 5.29673 5.34317 5.40686 5.49280 5.53168 5.56584 5.72324 5.87907 5.95715 6.00421 6.00606 6.46343 6.60873 6.71283 7.00967 7.19617 7.31938 8.83324 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018606 B = 0.001950 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.534526 B =14352.210626 C =15254.737848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.268 3.732 3 H 0.015 0.985 4 C -0.554 4.554 5 H 0.069 0.931 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.972 3.028 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.266 1.266 12 N -0.670 5.670 13 C 0.496 3.504 14 O -0.556 6.556 15 C 0.518 3.482 16 O -0.518 6.518 17 N -0.637 5.637 18 C 0.135 3.865 19 C -0.146 4.146 20 C -0.064 4.064 21 C -0.127 4.127 22 C 0.171 3.829 23 N -0.377 5.377 24 C 0.258 3.742 25 N -0.584 5.584 26 C 0.183 3.817 27 N -0.344 5.344 28 C -0.078 4.078 29 C -0.145 4.145 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.040 0.960 33 H 0.268 0.732 34 H 0.410 0.590 35 H 0.430 0.570 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.115 0.885 39 H 0.152 0.848 40 H 0.262 0.738 41 H 0.229 0.771 42 H 0.150 0.850 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.877 -8.096 -28.231 29.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.033 0.967 4 C -0.592 4.592 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.549 5.549 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.191 1.191 12 N -0.319 5.319 13 C 0.275 3.725 14 O -0.436 6.436 15 C 0.300 3.700 16 O -0.393 6.393 17 N -0.284 5.284 18 C 0.042 3.958 19 C -0.166 4.166 20 C -0.083 4.083 21 C -0.129 4.129 22 C 0.052 3.948 23 N -0.168 5.168 24 C -0.038 4.038 25 N -0.312 5.312 26 C -0.120 4.120 27 N -0.172 5.172 28 C -0.097 4.097 29 C -0.165 4.165 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.246 0.754 35 H 0.270 0.730 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.133 0.867 39 H 0.169 0.831 40 H 0.277 0.723 41 H 0.246 0.754 42 H 0.168 0.832 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.985 -7.486 -27.859 29.275 hybrid contribution 0.025 0.032 1.362 1.363 sum 5.011 -7.454 -26.496 27.977 Atomic orbital electron populations 1.21926 0.97309 0.99854 1.00386 1.18635 0.91804 0.92381 0.80614 0.96667 1.21445 1.33210 1.13829 0.90745 0.91249 1.25729 0.94729 0.95562 1.02060 1.70005 1.36439 1.23498 1.24949 0.85400 0.78607 0.78713 0.77659 1.19774 1.20745 1.19080 1.46278 1.61760 1.14837 1.09012 1.20100 0.80297 0.87016 0.85054 1.90712 1.51513 1.16248 1.85128 1.20240 0.78276 0.86827 0.84633 1.90744 1.47413 1.16040 1.85054 1.43132 1.65948 1.13553 1.05741 1.18083 0.97688 0.93619 0.86443 1.21145 0.98631 1.02129 0.94700 1.21076 0.96776 0.93981 0.96511 1.19967 1.00412 0.95017 0.97459 1.21016 0.80669 0.98309 0.94855 1.50808 1.09475 1.07670 1.48815 1.26944 0.94936 0.86426 0.95461 1.70530 1.07381 1.29536 1.23739 1.26421 1.01590 0.85698 0.98246 1.77996 0.92314 1.23894 1.23028 1.21138 0.96583 1.00254 0.91728 1.21193 1.02063 0.94327 0.98940 0.90721 0.96030 0.94101 0.92249 0.75424 0.73017 0.83678 0.83563 0.86715 0.83058 0.72270 0.75441 0.83224 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 9.26 71.98 0.67 -6.01 16 2 C 0.27 13.68 2.56 44.24 0.11 13.79 16 3 H 0.02 0.90 7.58 -2.39 -0.02 0.88 16 4 C -0.55 -29.33 8.73 25.60 0.22 -29.11 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -50.82 11.32 21.45 0.24 -50.58 16 8 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 12 N -0.67 -28.92 5.06 -447.56 -2.27 -31.18 16 13 C 0.50 19.92 7.85 87.24 0.68 20.60 16 14 O -0.56 -24.69 16.15 -3.25 -0.05 -24.74 16 15 C 0.52 17.48 7.62 87.24 0.67 18.15 16 16 O -0.52 -18.77 14.16 -3.32 -0.05 -18.82 16 17 N -0.64 -17.14 5.32 -304.83 -1.62 -18.77 16 18 C 0.14 3.24 6.28 38.22 0.24 3.48 16 19 C -0.15 -2.72 9.96 22.40 0.22 -2.50 16 20 C -0.06 -0.98 9.69 22.25 0.22 -0.76 16 21 C -0.13 -1.70 5.34 -19.84 -0.11 -1.81 16 22 C 0.17 1.11 6.67 85.63 0.57 1.69 16 23 N -0.38 -4.93 3.68 -355.81 -1.31 -6.24 16 24 C 0.26 2.96 12.63 180.36 2.28 5.24 16 25 N -0.58 -10.83 11.19 -204.00 -2.28 -13.11 16 26 C 0.18 3.43 13.03 180.77 2.36 5.78 16 27 N -0.34 -6.80 12.56 -61.25 -0.77 -7.57 16 28 C -0.08 -1.28 9.69 22.25 0.22 -1.07 16 29 C -0.15 -3.43 8.65 22.41 0.19 -3.24 16 30 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.41 16.40 8.01 -92.71 -0.74 15.65 16 35 H 0.43 10.20 8.30 -92.71 -0.77 9.43 16 36 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.11 0.42 8.08 -2.39 -0.02 0.40 16 39 H 0.15 -0.24 8.03 -2.38 -0.02 -0.26 16 40 H 0.26 0.12 8.06 -2.91 -0.02 0.09 16 41 H 0.23 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 43 H 0.12 3.25 6.41 -2.92 -0.02 3.23 16 Total: -1.00 -74.74 378.67 2.48 -72.26 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -0.43 Total: 29.13 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 8.99 Total: 25.76 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -8.01 Total: -127.45 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -0.10 Total: -43.56 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -74.74 2.48 -72.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438877217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.876 kcal (2) G-P(sol) polarization free energy of solvation -74.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds