Wall clock time and date at job start Wed Apr 1 2020 01:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47032 * 2 1 4 4 C 1.50701 * 109.46909 * 119.99603 * 2 1 3 5 5 H 1.07999 * 120.00028 * 115.02651 * 4 2 1 6 6 C 1.37880 * 120.00114 * 295.03793 * 4 2 1 7 7 N 1.31513 * 120.00132 * 154.97798 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 335.24749 * 6 4 2 9 9 H 1.48494 * 109.47134 * 179.73088 * 8 6 4 10 10 H 1.48501 * 109.46950 * 299.73007 * 8 6 4 11 11 H 1.48499 * 109.47004 * 59.72929 * 8 6 4 12 12 N 1.46496 * 109.47020 * 239.99605 * 2 1 3 13 13 C 1.34773 * 120.00040 * 85.00256 * 12 2 1 14 14 O 1.21361 * 120.00189 * 359.97438 * 13 12 2 15 15 C 1.49356 * 120.00085 * 179.97438 * 13 12 2 16 16 O 1.21366 * 120.00098 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99874 * 180.02562 * 15 13 12 18 18 C 1.39746 * 119.99734 * 183.80897 * 17 15 13 19 19 C 1.39042 * 120.00612 * 142.37492 * 18 17 15 20 20 C 1.38185 * 120.20671 * 179.97438 * 19 18 17 21 21 C 1.38054 * 120.21914 * 359.97438 * 20 19 18 22 22 C 1.39539 * 120.01289 * 0.02562 * 21 20 19 23 23 C 1.47949 * 120.10407 * 180.02562 * 22 21 20 24 24 N 1.31438 * 126.50817 * 160.77627 * 23 22 21 25 25 N 1.28549 * 109.71812 * 180.02562 * 24 23 22 26 26 C 1.30617 * 110.05792 * 359.97438 * 25 24 23 27 27 N 1.36082 * 107.43839 * 359.73820 * 26 25 24 28 28 C 1.46501 * 127.09878 * 180.26604 * 27 26 25 29 29 C 1.38665 * 120.00842 * 322.10166 * 18 17 15 30 30 H 1.08998 * 109.47308 * 173.70604 * 1 2 3 31 31 H 1.08991 * 109.47378 * 293.71347 * 1 2 3 32 32 H 1.09007 * 109.46698 * 53.70929 * 1 2 3 33 33 H 0.96995 * 120.00074 * 355.23397 * 7 6 4 34 34 H 0.97003 * 120.00318 * 264.99970 * 12 2 1 35 35 H 0.96995 * 120.00502 * 3.80172 * 17 15 13 36 36 H 1.08003 * 119.89990 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.89008 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.99031 * 180.02562 * 21 20 19 39 39 H 1.07994 * 126.28058 * 180.02562 * 26 25 24 40 40 H 1.09008 * 109.46913 * 267.09867 * 28 27 26 41 41 H 1.09000 * 109.47574 * 27.09596 * 28 27 26 42 42 H 1.09004 * 109.47116 * 147.10022 * 28 27 26 43 43 H 1.07997 * 120.10724 * 359.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5854 -1.6329 1.1336 6 6 1.7857 -0.1826 2.4802 7 7 1.7603 -0.9699 3.5333 8 14 1.4800 1.6498 2.6765 9 1 1.2356 1.9604 4.1078 10 1 2.6685 2.4035 2.2024 11 1 0.2930 2.0423 1.8751 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8581 1.1590 -2.4118 15 6 2.6455 -0.7224 -3.5764 16 8 2.9341 -1.9000 -3.5219 17 7 2.7747 -0.0500 -4.7373 18 6 3.1646 -0.7259 -5.8966 19 6 2.6057 -0.3830 -7.1227 20 6 2.9887 -1.0483 -8.2717 21 6 3.9289 -2.0572 -8.2098 22 6 4.4958 -2.4088 -6.9842 23 6 5.5040 -3.4894 -6.9156 24 7 6.3644 -3.6955 -5.9436 25 7 7.0884 -4.7224 -6.2157 26 6 6.7347 -5.2274 -7.3672 27 7 5.7137 -4.4678 -7.8493 28 6 4.9909 -4.6562 -9.1096 29 6 4.1132 -1.7349 -5.8252 30 1 -0.3634 -1.0214 -0.1127 31 1 -0.3633 0.4132 0.9408 32 1 -0.3633 0.6083 -0.8284 33 1 1.8462 -1.9298 3.4233 34 1 2.2491 -1.6319 -1.1525 35 1 2.5970 0.9031 -4.7681 36 1 1.8706 0.4063 -7.1774 37 1 2.5515 -0.7775 -9.2214 38 1 4.2258 -2.5745 -9.1102 39 1 7.1694 -6.0920 -7.8463 40 1 5.4587 -4.0557 -9.8900 41 1 5.0223 -5.7083 -9.3928 42 1 3.9539 -4.3446 -8.9838 43 1 4.5521 -1.9995 -4.8747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438879953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:12 Heat of formation + Delta-G solvation = 49.205146 kcal Electronic energy + Delta-G solvation = -28581.609027 eV Core-core repulsion = 24435.978556 eV Total energy + Delta-G solvation = -4145.630471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.23062 -40.94645 -39.35107 -38.06580 -35.77911 -35.34999 -34.71720 -32.65157 -32.47237 -30.32772 -29.78861 -29.44734 -28.18605 -25.34695 -24.75967 -24.09823 -23.01820 -22.07681 -21.21830 -20.62056 -19.74307 -18.87382 -18.06039 -17.23479 -16.97968 -16.84297 -16.63877 -16.07713 -15.90252 -15.41139 -15.06054 -14.92022 -14.56321 -14.09123 -13.95843 -13.89160 -13.56072 -13.51220 -13.28494 -13.08255 -12.74303 -12.26921 -12.11138 -11.95583 -11.78323 -11.75334 -11.44188 -11.29159 -10.85095 -10.57602 -10.56605 -10.54051 -10.18087 -10.10281 -9.89717 -9.30026 -9.23900 -8.80738 -8.51353 -8.42124 -8.30574 -6.64385 -4.24284 0.41724 0.90858 1.62012 1.77468 2.01517 2.49906 2.65566 3.36913 3.38110 3.43631 3.56958 3.58946 3.76222 3.92832 4.05603 4.23181 4.41365 4.45163 4.45413 4.59300 4.78059 4.78616 4.83072 4.90386 5.06755 5.08879 5.24749 5.32264 5.53756 5.74194 5.86766 5.97158 6.03427 6.13945 6.28783 6.43854 6.44583 6.55595 6.59274 6.80308 6.89570 7.12819 7.22639 7.51393 7.74296 8.19795 8.25862 8.43601 8.46763 8.77028 9.41427 10.74584 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.002355 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.919454 B =11887.510050 C =13131.749530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.242 3.758 3 H 0.046 0.954 4 C -0.632 4.632 5 H 0.066 0.934 6 C 0.048 3.952 7 N -0.884 5.884 8 Si 1.032 2.968 9 H -0.282 1.282 10 H -0.279 1.279 11 H -0.274 1.274 12 N -0.660 5.660 13 C 0.497 3.503 14 O -0.537 6.537 15 C 0.508 3.492 16 O -0.497 6.497 17 N -0.653 5.653 18 C 0.152 3.848 19 C -0.125 4.125 20 C -0.098 4.098 21 C -0.130 4.130 22 C -0.003 4.003 23 C 0.221 3.779 24 N -0.271 5.271 25 N -0.292 5.292 26 C 0.153 3.847 27 N -0.480 5.480 28 C 0.066 3.934 29 C -0.074 4.074 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.273 0.727 34 H 0.407 0.593 35 H 0.425 0.575 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.222 0.778 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -4.108 -31.493 31.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.140 3.860 3 H 0.063 0.937 4 C -0.669 4.669 5 H 0.084 0.916 6 C -0.160 4.160 7 N -0.515 5.515 8 Si 0.859 3.141 9 H -0.207 1.207 10 H -0.205 1.205 11 H -0.200 1.200 12 N -0.309 5.309 13 C 0.275 3.725 14 O -0.416 6.416 15 C 0.291 3.709 16 O -0.369 6.369 17 N -0.301 5.301 18 C 0.058 3.942 19 C -0.146 4.146 20 C -0.116 4.116 21 C -0.151 4.151 22 C -0.006 4.006 23 C -0.043 4.043 24 N -0.112 5.112 25 N -0.131 5.131 26 C -0.133 4.133 27 N -0.171 5.171 28 C -0.077 4.077 29 C -0.096 4.096 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.243 0.757 35 H 0.264 0.736 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.238 0.762 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.254 -2.835 -28.907 29.227 hybrid contribution -0.318 -1.632 -2.506 3.007 sum 2.936 -4.467 -31.412 31.864 Atomic orbital electron populations 1.22435 0.98287 1.00372 1.00441 1.19208 0.90936 0.94241 0.81644 0.93679 1.21975 1.42174 1.12093 0.90630 0.91571 1.25643 0.92777 1.05957 0.91638 1.70856 1.42003 1.06325 1.32321 0.84204 0.77747 0.75681 0.76468 1.20710 1.20541 1.19955 1.46271 1.61118 1.14771 1.08721 1.19672 0.81027 0.87245 0.84516 1.90720 1.50977 1.15151 1.84737 1.20912 0.78120 0.87125 0.84769 1.90788 1.46214 1.15542 1.84364 1.43202 1.66847 1.13446 1.06593 1.17599 0.94934 0.95521 0.86183 1.21159 1.00238 1.01917 0.91312 1.20798 0.97215 0.95433 0.98169 1.21314 0.98430 0.99021 0.96299 1.17232 0.95157 0.94141 0.94069 1.22911 1.00078 0.93201 0.88113 1.74655 1.04781 1.11067 1.20680 1.74267 1.21259 1.05624 1.11968 1.26637 0.91279 1.00393 0.95017 1.46527 1.28498 1.23221 1.18876 1.22354 0.98067 1.04536 0.82737 1.21307 0.94275 0.94845 0.99157 0.93450 0.91818 0.95038 0.91717 0.75740 0.73625 0.84743 0.84747 0.85432 0.76165 0.89633 0.88628 0.88458 0.82973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.22 37.16 0.34 -3.14 16 2 C 0.24 5.79 2.16 -69.08 -0.15 5.64 16 3 H 0.05 1.14 6.17 -51.93 -0.32 0.81 16 4 C -0.63 -17.15 8.94 -34.44 -0.31 -17.45 16 5 H 0.07 1.91 7.96 -52.49 -0.42 1.49 16 6 C 0.05 1.35 5.17 -17.82 -0.09 1.26 16 7 N -0.88 -26.10 13.70 55.43 0.76 -25.34 16 8 Si 1.03 24.53 26.49 -169.99 -4.50 20.03 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.07 6.20 56.52 0.35 -5.72 16 12 N -0.66 -13.91 5.06 -55.39 -0.28 -14.19 16 13 C 0.50 9.53 7.85 -11.63 -0.09 9.44 16 14 O -0.54 -10.99 16.14 5.49 0.09 -10.90 16 15 C 0.51 8.41 7.71 -11.63 -0.09 8.32 16 16 O -0.50 -9.16 14.11 5.48 0.08 -9.08 16 17 N -0.65 -8.44 5.31 -10.33 -0.05 -8.50 16 18 C 0.15 1.80 6.23 -83.79 -0.52 1.28 16 19 C -0.13 -1.06 9.96 -39.30 -0.39 -1.45 16 20 C -0.10 -0.66 10.02 -39.67 -0.40 -1.05 16 21 C -0.13 -0.99 8.67 -39.16 -0.34 -1.32 16 22 C 0.00 -0.03 5.86 -105.00 -0.62 -0.65 16 23 C 0.22 2.75 7.68 -154.24 -1.18 1.56 16 24 N -0.27 -4.31 12.04 32.51 0.39 -3.92 16 25 N -0.29 -4.16 12.19 29.82 0.36 -3.79 16 26 C 0.15 1.38 12.77 -89.32 -1.14 0.24 16 27 N -0.48 -4.04 3.20 -122.92 -0.39 -4.44 16 28 C 0.07 0.20 9.46 59.85 0.57 0.76 16 29 C -0.07 -1.00 8.32 -38.99 -0.32 -1.33 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.44 5.53 -51.93 -0.29 1.15 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.27 8.00 8.73 -40.82 -0.36 7.64 16 34 H 0.41 8.30 8.00 -40.82 -0.33 7.98 16 35 H 0.43 4.66 8.30 -40.82 -0.34 4.32 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.13 0.57 5.05 -52.49 -0.26 0.30 16 39 H 0.22 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.09 0.10 7.87 -51.92 -0.41 -0.31 16 41 H 0.10 0.06 8.14 -51.93 -0.42 -0.37 16 42 H 0.10 0.27 6.36 -51.93 -0.33 -0.06 16 43 H 0.15 2.52 6.38 -52.49 -0.33 2.18 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -36.18 367.64 -7.52 -43.70 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.77 Total: 8.78 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -4.74 Total: 2.12 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.79 Total: -60.18 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.17 Total: -19.98 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -4.50 Total: 20.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.18 -7.52 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438879953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.903 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds